Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007991

Physical Location & Seq

Genomic Coordinates Reverse (-)

9056158 .. 9056976

Gene Structure 819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47122

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCGTGCTGGAGACAGGGGTTCTGGAATGTGCTATACATACAGTTGTAGCAAAGGTGCATTTGTAGCAGTATCATTAGAAGGAAATGTTGTTGACACAAGGATGGATACAAATCTTCAATTTTATGGCGACCCTTACCTGACGACTAATGATATACTACTTGGGATCGGACAGTGGAAAGACCAAAGGCCGCGGAGCCCCTGTATGGGGCCCTTCAATCCCTCTACTCCAGTCTACAGTCCTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001726 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0008289 GO:0009987 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0031252 GO:0031253 GO:0031256 GO:0031344 GO:0032587 GO:0035091 GO:0042995 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044463 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051015 GO:0051017 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051666 GO:0060491 GO:0061572 GO:0061645 GO:0065007 GO:0071840 GO:0071944 GO:0097435 GO:0098590 GO:0098657 GO:0099568 GO:0120025 GO:0120032 GO:0120035 GO:0120038 GO:1900027

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYVE Ysc84

Protein Analysis

82

Amino Acids

9.06

Weight (kDa)

7.69

Isoelectric Point (pI)

30.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ysc84	PF04366	9 - 59	6e-13	Las17-binding protein actin regulator

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43230
fragaria_vesca	FvH4_1g09450 FvH4_1g09450
malus_domestica	MD02G1102900.v1.1 MD15G1224000.v1.1
prunus_persica	Prupe.7G191500_v2.0.a1 Prupe.7G191500_v2.0.a1 Prupe.7G191500_v2.0.a1 Prupe.7G191500_v2.0.a1
pyrus_communis	pycom02g08060 pycom15g19820
rosa_chinensis	RchiOBHm_Chr2g0096001 RchiOBHm_Chr2g0096261
rosa_laevigata	RLG00000016616 RLG00000016630
rosa_multiflora	Rmu_co8311399.1_g000001 Rmu_sc0002497.1_g000013
rosa_roxburghii	Rroxscaffold_2G00145870
rosa_rugosa	Rorug02G0055800
rosa_samantha	Rh2AG103700 Rh2BG105200 Rh2CG107700 Rh2DG105600
rosa_wichuraiana	Rw2G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	234
AccII	CGCG	1 cut(s)	193
AciI	CCGC	2 cut(s)	191, 193
AclWI	GGATC	1 cut(s)	173
AfiI	CCNNNNNNNGG	3 cut(s)	205, 206, 207
AgsI	TTSAA	2 cut(s)	119, 217
Alw26I	GTCTC	1 cut(s)	6
AlwI	GGATC	1 cut(s)	173
AoxI	GGCC	2 cut(s)	188, 209
ApaI	GGGCCC	1 cut(s)	213
AspS9I	GGNCC	2 cut(s)	209, 210
BaeGI	GKGCMC	1 cut(s)	213
BanII	GRGCYC	2 cut(s)	200, 213
BccI	CCATC	1 cut(s)	97
BciVI	GTATCC	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	6
BfaI	CTAG	1 cut(s)	243
BfmI	CTRYAG	1 cut(s)	235
BfuI	GTATCC	1 cut(s)	100
BisI	GCNGC	1 cut(s)	191
BlsI	GCNGC	1 cut(s)	192
BmgT120I	GGNCC	2 cut(s)	209, 210
BmiI	GGNNCC	3 cut(s)	197, 210, 211
BpmI	CTGGAG	2 cut(s)	30, 213
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	191
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bsc4I	CCNNNNNNNGG	3 cut(s)	205, 206, 207
Bse1I	ACTGG	1 cut(s)	230
Bse8I	GATNNNNATC	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	108
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	3 cut(s)	205, 206, 207
BseNI	ACTGG	1 cut(s)	230
BseSI	GKGCMC	1 cut(s)	213
Bsh1236I	CGCG	1 cut(s)	193
BshFI	GGCC	2 cut(s)	190, 211
BslI	CCNNNNNNNGG	3 cut(s)	205, 206, 207
BsmAI	GTCTC	1 cut(s)	6
BsnI	GGCC	2 cut(s)	190, 211
Bsp120I	GGGCCC	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	200, 213
Bsp143I	GATC	1 cut(s)	165
BspACI	CCGC	2 cut(s)	191, 193
BspANI	GGCC	2 cut(s)	190, 211
BspFNI	CGCG	1 cut(s)	193
BspLI	GGNNCC	3 cut(s)	197, 210, 211
BspPI	GGATC	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	1 cut(s)	165
Bst4CI	ACNGT	3 cut(s)	44, 174, 239
BstC8I	GCNNGC	1 cut(s)	6
BstDSI	CCRYGG	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	1 cut(s)	193
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	213
BstUI	CGCG	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	190, 211
BtgI	CCRYGG	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	179
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	209, 210
Cfr42I	CCGCGG	1 cut(s)	194
CviJI	RGCY	3 cut(s)	190, 198, 211
CviKI_1	RGCY	3 cut(s)	190, 198, 211
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
Eco24I	GRGCYC	2 cut(s)	200, 213
EcoO109I	RGGNCCY	2 cut(s)	209, 210
EcoT38I	GRGCYC	2 cut(s)	200, 213
FaiI	YATR	5 cut(s)	36, 40, 126, 155, 206
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	1 cut(s)	191
FokI	GGATG	1 cut(s)	115
FriOI	GRGCYC	2 cut(s)	200, 213
Fsp4HI	GCNGC	1 cut(s)	191
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	1 cut(s)	191
GsuI	CTGGAG	2 cut(s)	30, 213
HaeIII	GGCC	2 cut(s)	190, 211
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
Hpy166II	GTNNAC	2 cut(s)	94, 235
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	1 cut(s)	24
Hpy8I	GTNNAC	2 cut(s)	94, 235
HpyAV	CCTTC	2 cut(s)	74, 223
HpyCH4III	ACNGT	3 cut(s)	44, 174, 239
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
KspI	CCGCGG	1 cut(s)	194
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	195
LpnPI	CCDG	4 cut(s)	9, 152, 214, 243
MaeI	CTAG	1 cut(s)	243
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	1 cut(s)	107
MhlI	GDGCHC	2 cut(s)	200, 213
MluCI	AATT	1 cut(s)	119
MnlI	CCTC	1 cut(s)	232
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	193
MvnI	CGCG	1 cut(s)	193
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	1 cut(s)	165
NlaIV	GGNNCC	3 cut(s)	197, 210, 211
PkrI	GCNGC	1 cut(s)	192
PspN4I	GGNNCC	3 cut(s)	197, 210, 211
PspOMI	GGGCCC	1 cut(s)	209
PspPI	GGNCC	2 cut(s)	209, 210
RseI	CAYNNNNRTG	1 cut(s)	101
SacII	CCGCGG	1 cut(s)	194
SatI	GCNGC	1 cut(s)	191
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	2 cut(s)	209, 210
SduI	GDGCHC	2 cut(s)	200, 213
SetI	ASST	2 cut(s)	58, 141
SfcI	CTRYAG	1 cut(s)	235
Sfr303I	CCGCGG	1 cut(s)	194
SgrBI	CCGCGG	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	1 cut(s)	119
SsiI	CCGC	2 cut(s)	191, 193
SspMI	CTAG	1 cut(s)	243
TaaI	ACNGT	3 cut(s)	44, 174, 239
TasI	AATT	1 cut(s)	119
TauI	GCSGC	1 cut(s)	193
TscAI	CASTG	1 cut(s)	179
TspRI	CASTG	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	234
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.