Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007991

Physical Location & Seq

Genomic Coordinates Forward (+)

8804695 .. 8808046

Gene Structure 3352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG105200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCGAGTTTTGAGGGGAGGGTTTCGTTTTCGTCCCTTCCTAAGATAGAGAAAAGCAATACCCAATTCCACTATGCTGATGATGACTTCATCGATGCCGAATGGCCTGTGCACGAAGGCGGAGGCGGTACGACTTACCCATCAGTTTCCAAAGCTGAGAAGCAAGATTATTCGTATCAATTTCCCCCGGAATTTGATAGTTTTGGAGATGACACTGGATATGATTCTAGCCAGGAGCATTGTGGTTCTGGGGAGATGGGTGGGCCGCCGGAGGTGAACTTGAAGAATGTGTTGACCGGGATGATTGCCATTGTGACTGGCCGGAACAAAGTTGCTCCCGGTGAAACACCTGAGCAGCAGCAGCAGCAACCCACTTCGAATGTTTCATTTCTCGGCGCAGAAAAGAATGGTGATACTTACTTGCATTCCTCGGTTTACACGCCCAGTGCCCCGCCCCTTTTTGAGCCGGTTGCCTTTAATTATAGTGCATACAAGGAAATTTTGGAGGCTGAACCCCCTGAATGGCTTCCTGACAGTTCAAGTATAGTTTGCATGCAGTGCACTTCTCCTTTCACTGCCTTAACTCGTGGGAGACATCATTGCCGATTCTGTGGGGGGATTTTCTGCAGAACATGTAGTAAAGGAAGGTGCTTGTTGCCTGTCAAGTTTAGGGAGAGGAATCCGCAGAGGGTCTGTGATGCCTGCTATGACAGGTTGGATCCTTTGCAGGGTATTCTTATTAACAGCATTAGCAATGCTGCACAAGCAGCAAAGCATGACGTCATGGATTGGACATGCACAAGAGGATGGTTAAATCTTCCTGTTGGTTTCTCCATGGAACAAGAGATATACAAAGCAACCAACACATTGAGAAGTTACTCCCAGGTTTCTAGGCTGAATCCGGAGAGGTCCATACCCTTGGCTGTTCTCAAAGGAGCCAAAGGCCTGGCAATCCTAACTGTTGCTAAAGCTGGTGCACTACTTTCTTACAAACTTGGTACTGGTTTGGTGGTTTCTCGAAGGTCAGATGGATCATGGTCTGCTCCATCAGCCATATGTTCTGTTGGCTTAGGATGGGGTGCACAGGTAAATTTACTTTGTAATATTCTATATCTTTTATTGGCCTTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001726 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005886 GO:0005938 GO:0006810 GO:0006897 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0008289 GO:0009987 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0022607 GO:0030029 GO:0030036 GO:0030479 GO:0030863 GO:0030864 GO:0031252 GO:0031253 GO:0031256 GO:0031344 GO:0032587 GO:0035091 GO:0042995 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044087 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044459 GO:0044463 GO:0044464 GO:0044877 GO:0050789 GO:0050794 GO:0051015 GO:0051017 GO:0051128 GO:0051179 GO:0051234 GO:0051641 GO:0051666 GO:0060491 GO:0061572 GO:0061645 GO:0065007 GO:0071840 GO:0071944 GO:0097435 GO:0098590 GO:0098657 GO:0099568 GO:0120025 GO:0120032 GO:0120035 GO:0120038 GO:1900027

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYVE Ysc84

Protein Analysis

377

Amino Acids

41.18

Weight (kDa)

5.85

Isoelectric Point (pI)

49.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FYVE	PF01363	174 - 239	1.4e-20	FYVE zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43230
fragaria_vesca	FvH4_1g09450 FvH4_1g09450
malus_domestica	MD02G1102900.v1.1 MD15G1224000.v1.1
prunus_persica	Prupe.7G191500_v2.0.a1 Prupe.7G191500_v2.0.a1 Prupe.7G191500_v2.0.a1 Prupe.7G191500_v2.0.a1
pyrus_communis	pycom02g08060 pycom15g19820
rosa_chinensis	RchiOBHm_Chr2g0096001 RchiOBHm_Chr2g0096261
rosa_laevigata	RLG00000016616 RLG00000016630
rosa_multiflora	Rmu_co8311399.1_g000001 Rmu_sc0002497.1_g000013
rosa_roxburghii	Rroxscaffold_2G00145870
rosa_rugosa	Rorug02G0055800
rosa_samantha	Rh2AG103700 Rh2BG105200 Rh2CG107700 Rh2DG105600
rosa_wichuraiana	Rw2G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	783
AccIII	TCCGGA	1 cut(s)	901
AciI	CCGC	5 cut(s)	120, 126, 266, 452, 683
AclWI	GGATC	3 cut(s)	713, 726, 1039
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	3 cut(s)	191, 498, 1090
AcyI	GRCGYC	1 cut(s)	780
AfaI	GTAC	2 cut(s)	130, 1000
AfiI	CCNNNNNNNGG	2 cut(s)	522, 728
AflIII	ACRYGT	1 cut(s)	632
AgsI	TTSAA	2 cut(s)	283, 540
AjnI	CCWGG	3 cut(s)	231, 882, 945
AluBI	AGCT	2 cut(s)	155, 971
AluI	AGCT	2 cut(s)	155, 971
Alw21I	GWGCWC	4 cut(s)	114, 563, 979, 1084
Alw26I	GTCTC	1 cut(s)	586
Alw44I	GTGCAC	4 cut(s)	110, 559, 975, 1080
AlwI	GGATC	3 cut(s)	713, 726, 1039
Aor13HI	TCCGGA	1 cut(s)	901
AoxI	GGCC	5 cut(s)	104, 263, 319, 943, 1122
ApaLI	GTGCAC	4 cut(s)	110, 559, 975, 1080
ApeKI	GCWGC	6 cut(s)	355, 358, 361, 364, 758, 767
ApoI	RAATTY	3 cut(s)	191, 498, 1090
Asp700I	GAANNNNTTC	1 cut(s)	525
AspLEI	GCGC	1 cut(s)	398
AspS9I	GGNCC	2 cut(s)	263, 909
AsuC2I	CCSGG	3 cut(s)	188, 298, 339
AsuHPI	GGTGA	3 cut(s)	286, 353, 422
AsuII	TTCGAA	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	909
BaeGI	GKGCMC	5 cut(s)	114, 451, 563, 979, 1084
BamHI	GGATCC	1 cut(s)	718
BauI	CACGAG	1 cut(s)	585
Bbv12I	GWGCWC	4 cut(s)	114, 563, 979, 1084
BbvI	GCAGC	6 cut(s)	367, 370, 373, 376, 745, 779
BccI	CCATC	6 cut(s)	148, 250, 801, 1022, 1054, 1068
BciT130I	CCWGG	3 cut(s)	233, 884, 947
BcnI	CCSGG	3 cut(s)	188, 298, 339
BcoDI	GTCTC	1 cut(s)	586
BfaI	CTAG	2 cut(s)	228, 891
BfmI	CTRYAG	1 cut(s)	625
BisI	GCNGC	7 cut(s)	266, 356, 359, 362, 365, 759, 768
BlsI	GCNGC	7 cut(s)	267, 357, 360, 363, 366, 760, 769
Bme1390I	CCNGG	6 cut(s)	188, 233, 298, 339, 884, 947
Bme18I	GGWCC	1 cut(s)	909
BmgT120I	GGNCC	2 cut(s)	263, 909
BmiI	GGNNCC	2 cut(s)	720, 937
BmrFI	CCNGG	6 cut(s)	188, 233, 298, 339, 884, 947
BmrI	ACTGGG	1 cut(s)	438
BmsI	GCATC	2 cut(s)	85, 688
BmuI	ACTGGG	1 cut(s)	438
Bpu10I	CCTNAGC	2 cut(s)	351, 1069
Bpu14I	TTCGAA	1 cut(s)	377
BpuMI	CCSGG	3 cut(s)	188, 298, 339
Bsa29I	ATCGAT	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	780
BsaJI	CCNNGG	5 cut(s)	186, 429, 834, 882, 918
BsaWI	WCCGGW	1 cut(s)	901
Bsc4I	CCNNNNNNNGG	2 cut(s)	522, 728
Bse118I	RCCGGY	1 cut(s)	466
Bse1I	ACTGG	4 cut(s)	220, 322, 444, 1006
Bse3DI	GCAATG	2 cut(s)	598, 760
BseAI	TCCGGA	1 cut(s)	901
BseBI	CCWGG	3 cut(s)	233, 884, 947
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	5 cut(s)	186, 429, 834, 882, 918
BseGI	GGATG	3 cut(s)	306, 812, 1079
BseLI	CCNNNNNNNGG	2 cut(s)	522, 728
BseMI	GCAATG	2 cut(s)	598, 760
BseMII	CTCAG	2 cut(s)	147, 342
BseNI	ACTGG	4 cut(s)	220, 322, 444, 1006
BseSI	GKGCMC	5 cut(s)	114, 451, 563, 979, 1084
BseXI	GCAGC	6 cut(s)	367, 370, 373, 376, 745, 779
BsgI	GTGCAG	1 cut(s)	744
BshFI	GGCC	5 cut(s)	106, 265, 321, 945, 1124
BshVI	ATCGAT	1 cut(s)	93
BsiHKAI	GWGCWC	4 cut(s)	114, 563, 979, 1084
BsiSI	CCGG	7 cut(s)	188, 269, 297, 322, 339, 467, 902
BslFI	GGGAC	1 cut(s)	19
BslI	CCNNNNNNNGG	2 cut(s)	522, 728
BsmAI	GTCTC	1 cut(s)	586
BsmFI	GGGAC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	424
BsnI	GGCC	5 cut(s)	106, 265, 321, 945, 1124
Bsp119I	TTCGAA	1 cut(s)	377
Bsp1286I	GDGCHC	5 cut(s)	114, 451, 563, 979, 1084
Bsp13I	TCCGGA	1 cut(s)	901
Bsp143I	GATC	2 cut(s)	718, 1031
Bsp19I	CCATGG	1 cut(s)	834
BspACI	CCGC	5 cut(s)	120, 126, 266, 452, 683
BspANI	GGCC	5 cut(s)	106, 265, 321, 945, 1124
BspCNI	CTCAG	2 cut(s)	148, 343
BspDI	ATCGAT	1 cut(s)	93
BspEI	TCCGGA	1 cut(s)	901
BspLI	GGNNCC	2 cut(s)	720, 937
BspMAI	CTGCAG	1 cut(s)	629
BspPI	GGATC	3 cut(s)	713, 726, 1039
BspT104I	TTCGAA	1 cut(s)	377
BsrDI	GCAATG	2 cut(s)	598, 760
BsrFI	RCCGGY	1 cut(s)	466
BsrI	ACTGG	4 cut(s)	220, 322, 444, 1006
BssAI	RCCGGY	1 cut(s)	466
BssECI	CCNNGG	5 cut(s)	186, 429, 834, 882, 918
BssMI	GATC	2 cut(s)	718, 1031
BssNI	GRCGYC	1 cut(s)	780
BssSI	CACGAG	1 cut(s)	585
BssT1I	CCWWGG	2 cut(s)	834, 918
Bst2BI	CACGAG	1 cut(s)	585
Bst2UI	CCWGG	3 cut(s)	233, 884, 947
Bst4CI	ACNGT	2 cut(s)	536, 961
BstACI	GRCGYC	1 cut(s)	780
BstAPI	GCANNNNNTGC	1 cut(s)	558
BstBI	TTCGAA	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	554, 703
BstDEI	CTNAG	4 cut(s)	42, 156, 351, 1069
BstDSI	CCRYGG	1 cut(s)	834
BstF5I	GGATG	3 cut(s)	306, 812, 1079
BstHHI	GCGC	1 cut(s)	398
BstKTI	GATC	2 cut(s)	721, 1034
BstMAI	GTCTC	1 cut(s)	586
BstMBI	GATC	2 cut(s)	718, 1031
BstMWI	GCNNNNNNNGC	6 cut(s)	361, 364, 558, 764, 767, 1049
BstNI	CCWGG	3 cut(s)	233, 884, 947
BstNSI	RCATGY	3 cut(s)	556, 636, 798
BstSCI	CCNGG	6 cut(s)	186, 231, 296, 337, 882, 945
BstSFI	CTRYAG	1 cut(s)	625
BstSLI	GKGCMC	5 cut(s)	114, 451, 563, 979, 1084
BstV1I	GCAGC	6 cut(s)	367, 370, 373, 376, 745, 779
BstX2I	RGATCY	1 cut(s)	718
BstXI	CCANNNNNNTGG	2 cut(s)	919, 946
BstYI	RGATCY	1 cut(s)	718
Bsu15I	ATCGAT	1 cut(s)	93
BsuRI	GGCC	5 cut(s)	106, 265, 321, 945, 1124
BsuTUI	ATCGAT	1 cut(s)	93
BtgI	CCRYGG	1 cut(s)	834
BtsCI	GGATG	3 cut(s)	306, 812, 1079
BtsI	GCAGTG	2 cut(s)	563, 573
BtsIMutI	CAGTG	4 cut(s)	213, 451, 563, 573
Cac8I	GCNNGC	2 cut(s)	554, 703
CfoI	GCGC	1 cut(s)	398
Cfr10I	RCCGGY	1 cut(s)	466
Cfr13I	GGNCC	2 cut(s)	263, 909
ClaI	ATCGAT	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	129, 999
CviAII	CATG	7 cut(s)	553, 633, 776, 784, 795, 835, 1035
CviQI	GTAC	2 cut(s)	129, 999
DdeI	CTNAG	4 cut(s)	42, 156, 351, 1069
DpnI	GATC	2 cut(s)	720, 1033
DpnII	GATC	2 cut(s)	718, 1031
EaeI	YGGCCR	1 cut(s)	319
EciI	GGCGGA	1 cut(s)	135
Eco130I	CCWWGG	2 cut(s)	834, 918
Eco147I	AGGCCT	1 cut(s)	945
Eco47I	GGWCC	1 cut(s)	909
EcoRII	CCWGG	3 cut(s)	231, 882, 945
EcoT14I	CCWWGG	2 cut(s)	834, 918
ErhI	CCWWGG	2 cut(s)	834, 918
FaeI	CATG	7 cut(s)	556, 636, 779, 787, 798, 838, 1038
FaqI	GGGAC	1 cut(s)	19
FatI	CATG	7 cut(s)	552, 632, 775, 783, 794, 834, 1034
FauI	CCCGC	1 cut(s)	459
FauNDI	CATATG	1 cut(s)	1055
Fnu4HI	GCNGC	7 cut(s)	266, 356, 359, 362, 365, 759, 768
FokI	GGATG	3 cut(s)	313, 819, 1086
Fsp4HI	GCNGC	7 cut(s)	266, 356, 359, 362, 365, 759, 768
FspBI	CTAG	2 cut(s)	228, 891
GlaI	GCGC	1 cut(s)	397
GluI	GCNGC	7 cut(s)	266, 356, 359, 362, 365, 759, 768
HaeIII	GGCC	5 cut(s)	106, 265, 321, 945, 1124
HapII	CCGG	7 cut(s)	188, 269, 297, 322, 339, 467, 902
HhaI	GCGC	1 cut(s)	398
Hin1I	GRCGYC	1 cut(s)	780
Hin1II	CATG	7 cut(s)	556, 636, 779, 787, 798, 838, 1038
Hin6I	GCGC	1 cut(s)	396
HinP1I	GCGC	1 cut(s)	396
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	4 cut(s)	224, 606, 679, 898
HpaII	CCGG	7 cut(s)	188, 269, 297, 322, 339, 467, 902
HphI	GGTGA	3 cut(s)	286, 353, 422
Hpy166II	GTNNAC	7 cut(s)	112, 277, 294, 436, 561, 977, 1082
Hpy188I	TCNGA	1 cut(s)	1027
Hpy188III	TCNNGA	3 cut(s)	530, 902, 1017
Hpy8I	GTNNAC	7 cut(s)	112, 277, 294, 436, 561, 977, 1082
HpyAV	CCTTC	4 cut(s)	47, 110, 639, 1014
HpyCH4III	ACNGT	2 cut(s)	536, 961
HpyCH4IV	ACGT	1 cut(s)	780
HpyF10VI	GCNNNNNNNGC	6 cut(s)	361, 364, 558, 764, 767, 1049
HpyF3I	CTNAG	4 cut(s)	42, 156, 351, 1069
HpySE526I	ACGT	1 cut(s)	780
Hsp92I	GRCGYC	1 cut(s)	780
Hsp92II	CATG	7 cut(s)	556, 636, 779, 787, 798, 838, 1038
HspAI	GCGC	1 cut(s)	396
Kpn2I	TCCGGA	1 cut(s)	901
Kzo9I	GATC	2 cut(s)	718, 1031
LmnI	GCTCC	4 cut(s)	235, 340, 935, 1048
Lsp1109I	GCAGC	6 cut(s)	367, 370, 373, 376, 745, 779
LweI	GCATC	2 cut(s)	85, 688
MaeI	CTAG	2 cut(s)	228, 891
MaeII	ACGT	1 cut(s)	780
MaeIII	GTNAC	2 cut(s)	313, 875
MalI	GATC	2 cut(s)	720, 1033
MboI	GATC	2 cut(s)	718, 1031
MboII	GAAGA	2 cut(s)	295, 809
MflI	RGATCY	1 cut(s)	718
MhlI	GDGCHC	5 cut(s)	114, 451, 563, 979, 1084
MluCI	AATT	6 cut(s)	65, 179, 191, 478, 498, 1090
MmeI	TCCRAC	1 cut(s)	696
MroI	TCCGGA	1 cut(s)	901
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	4 cut(s)	477, 581, 741, 812
MspI	CCGG	7 cut(s)	188, 269, 297, 322, 339, 467, 902
MspR9I	CCNGG	6 cut(s)	188, 233, 298, 339, 884, 947
Mva1269I	GAATGC	1 cut(s)	424
MvaI	CCWGG	3 cut(s)	233, 884, 947
MwoI	GCNNNNNNNGC	6 cut(s)	361, 364, 558, 764, 767, 1049
NciI	CCSGG	3 cut(s)	188, 298, 339
NcoI	CCATGG	1 cut(s)	834
NdeI	CATATG	1 cut(s)	1055
NdeII	GATC	2 cut(s)	718, 1031
NlaIII	CATG	7 cut(s)	556, 636, 779, 787, 798, 838, 1038
NlaIV	GGNNCC	2 cut(s)	720, 937
NmeAIII	GCCGAG	1 cut(s)	372
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	3 cut(s)	556, 636, 798
NspV	TTCGAA	1 cut(s)	377
PaeI	GCATGC	1 cut(s)	556
PceI	AGGCCT	1 cut(s)	945
PciI	ACATGT	1 cut(s)	632
PctI	GAATGC	1 cut(s)	424
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	4 cut(s)	224, 606, 679, 898
PkrI	GCNGC	7 cut(s)	267, 357, 360, 363, 366, 760, 769
PscI	ACATGT	1 cut(s)	632
Psp6I	CCWGG	3 cut(s)	231, 882, 945
PspGI	CCWGG	3 cut(s)	231, 882, 945
PspN4I	GGNNCC	2 cut(s)	720, 937
PspPI	GGNCC	2 cut(s)	263, 909
PstI	CTGCAG	1 cut(s)	629
PsuI	RGATCY	1 cut(s)	718
RsaI	GTAC	2 cut(s)	130, 1000
RsaNI	GTAC	2 cut(s)	129, 999
SaqAI	TTAA	4 cut(s)	477, 581, 741, 812
SatI	GCNGC	7 cut(s)	266, 356, 359, 362, 365, 759, 768
Sau3AI	GATC	2 cut(s)	718, 1031
Sau96I	GGNCC	2 cut(s)	263, 909
ScrFI	CCNGG	6 cut(s)	188, 233, 298, 339, 884, 947
SduI	GDGCHC	5 cut(s)	114, 451, 563, 979, 1084
SfaNI	GCATC	2 cut(s)	85, 688
SfcI	CTRYAG	1 cut(s)	625
SfuI	TTCGAA	1 cut(s)	377
SinI	GGWCC	1 cut(s)	909
SphI	GCATGC	1 cut(s)	556
Sse9I	AATT	6 cut(s)	65, 179, 191, 478, 498, 1090
SseBI	AGGCCT	1 cut(s)	945
SsiI	CCGC	5 cut(s)	120, 126, 266, 452, 683
SspI	AATATT	1 cut(s)	1105
SspMI	CTAG	2 cut(s)	228, 891
StuI	AGGCCT	1 cut(s)	945
StyD4I	CCNGG	6 cut(s)	186, 231, 296, 337, 882, 945
StyI	CCWWGG	2 cut(s)	834, 918
TaaI	ACNGT	2 cut(s)	536, 961
TaiI	ACGT	1 cut(s)	783
TaqI	TCGA	3 cut(s)	93, 377, 1018
TasI	AATT	6 cut(s)	65, 179, 191, 478, 498, 1090
TauI	GCSGC	1 cut(s)	268
TfiI	GAWTC	4 cut(s)	224, 606, 679, 898
Tru1I	TTAA	4 cut(s)	477, 581, 741, 812
Tru9I	TTAA	4 cut(s)	477, 581, 741, 812
TscAI	CASTG	4 cut(s)	220, 451, 563, 580
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	6 cut(s)	355, 358, 361, 364, 758, 767
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	2 cut(s)	79, 375
TspRI	CASTG	4 cut(s)	220, 451, 563, 580
VneI	GTGCAC	4 cut(s)	110, 559, 975, 1080
VpaK11BI	GGWCC	1 cut(s)	909
XapI	RAATTY	3 cut(s)	191, 498, 1090
XceI	RCATGY	3 cut(s)	556, 636, 798
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	2 cut(s)	228, 891
ZraI	GACGTC	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.