RchiOBHm_Chr2g0096331

Pectinesterase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
9114102 .. 9116303
2202 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47128

Sequence Viewer

Length: 1281 bp
ATGACCATGTCCTTGAAGCGCCTAGACCAATGCCTAATAGCTCTCAAGAAATCTCCCTTGAAAAACAAGCACGACATTCAGGCATGGCTAAGTGCCGCCTTGACTTTCCATGAAACGTGCAAGGACTACGCCGCCGACCACGGCCTCAGCCTCACTAGCTCCGAGAATCTCAGGGTCGACCTTTCCAAGCGCATAGATTATGCCTCTCAGTTGGGAAGTAATCTATTAGCCCTCGTCAACCGTGTTACAAGTATCGGTGCGCCGAAGAACACAATTCGCGATAAACAAGCAGAGGTTTTTCCCAAATGGGTTTCGCCGAAGAACCGGAAACTACTTCAGGCAACCACAGTCAAAGCGAACGCAGTGGTTGCACAAGATGGATCAGGGAACTATAAGACTGTGTCGGAGGCTATTCAGGCAGCTTCAGGGGGTCGGTTTGTGATTTATGTGAAGGCGGGAGTTTATAAGGAAAAGATTAAGACTAACAAAGATGGTATTACGTTGATTGGAGATGGAAAGTATTCAACTATTATTACTGGGGATTCTAGCGTCGCTAAAGGTGCTTCCCTGCCTGGCTCAGCTACATTCACTGTAACAGGAGATGGATTCATAGCTCGAGATATTGGTTTCCAAAACACAGCAGGCCCTGATGGAGAACAAGCCTTAGCTCTGTACATCTCTTCTGATCACTCAGTTCTCTACAGGTGTAGCGTTGTTGGCTACCAAGACACACTCTACGCACTCGCCCTCCGCCAATTCTACAGAGAATGTGACATTCATGGCAGCCTCGACTTCATCTTCGGAAACGCCGCCGCCGTCTTCCAGAGTTGCAATCTCATCTTCCGCAGGCACAAGGGCTATGGTGTTATCCTGGCAAGCGGGAGGTCCGACCCGGGGCAAAAGACGGGCTTCTCCGTCCAGAACTGTAGGATTCTGCCCGGGTCAGACTTATCTCCTGTTAAACATTCCTACAGTTCGTATCTTGGGAGGCCATGGAAGGCCTACGCTAGAGCCGTGGTGATGCAGTCCAACATAGGTGACGTTATTGCTCCCGGTGGCTGGGTCCAGTGGCCTGGGGCTGAAGCTTCCAGGCTCAAGTCACTCTACTTTGCGGAGTTCGCAAACGTGGGACCTGGGGCTGGAGTGGCCCAGAGGGTGAAGTGGCCAGGGTTTCATGTTATTGGAGCTGATATTGCTGTTGAGTACACTGTAGGTAACTTTATTGGTGGAACTTCATGGCTTCCTTCGACCGGCGTGACTTTTGTTTCCGGCCTCCGTTGA

Protein Analysis

426

Amino Acids

45.87

Weight (kDa)

9.44

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 4 - 78 2.6e-08 Plant invertase/pectin methylesterase inhibitor
Pectinesterase PF01095 120 - 410 8.1e-114 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
AccI GTMKAC 1 cut(s) 177
AccII CGCG 1 cut(s) 279
AciI CCGC 9 cut(s) 96, 132, 455, 751, 810, 813, 844, 879, 1112
AclWI GGATC 1 cut(s) 388
AcoI YGGCCR 1 cut(s) 1163
AcuI CTGAAG 3 cut(s) 320, 408, 1101
AfaI GTAC 2 cut(s) 674, 1205
AfiI CCNNNNNNNGG 4 cut(s) 894, 1059, 1139, 1250
AgsI TTSAA 3 cut(s) 16, 61, 525
AjnI CCWGG 6 cut(s) 571, 870, 1072, 1088, 1132, 1165
AluBI AGCT 8 cut(s) 41, 159, 422, 581, 614, 668, 1085, 1187
AluI AGCT 8 cut(s) 41, 159, 422, 581, 614, 668, 1085, 1187
AlwI GGATC 1 cut(s) 388
AlwNI CAGNNNCTG 1 cut(s) 647
Ama87I CYCGRG 3 cut(s) 615, 892, 938
AoxI GGCC 8 cut(s) 142, 643, 989, 999, 1070, 1146, 1163, 1270
ApeKI GCWGC 2 cut(s) 419, 783
ArsI GACNNNNNNTTYG 2 cut(s) 782, 814
Asp700I GAANNNNTTC 1 cut(s) 520
AspLEI GCGC 3 cut(s) 21, 192, 262
AspS9I GGNCC 5 cut(s) 644, 885, 1063, 1130, 1147
AsuC2I CCSGG 5 cut(s) 893, 894, 939, 940, 1053
AsuHPI GGTGA 3 cut(s) 1030, 1049, 1168
AvaI CYCGRG 3 cut(s) 615, 892, 938
AvaII GGWCC 3 cut(s) 885, 1063, 1130
BalI TGGCCA 1 cut(s) 1165
BbsI GAAGAC 1 cut(s) 811
BbvCI CCTCAGC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 431, 795
BccI CCATC 5 cut(s) 371, 485, 506, 596, 644
BceAI ACGGC 3 cut(s) 157, 800, 998
BciT130I CCWGG 6 cut(s) 573, 872, 1074, 1090, 1134, 1167
BclI TGATCA 1 cut(s) 685
BcnI CCSGG 5 cut(s) 893, 894, 939, 940, 1053
BfaI CTAG 4 cut(s) 23, 156, 546, 1008
BfmI CTRYAG 5 cut(s) 700, 760, 925, 970, 1209
BfoI RGCGCY 1 cut(s) 22
BisI GCNGC 6 cut(s) 96, 132, 420, 784, 810, 813
BlpI GCTNAGC 1 cut(s) 577
BlsI GCNGC 6 cut(s) 97, 133, 421, 785, 811, 814
Bme18I GGWCC 3 cut(s) 885, 1063, 1130
BmeT110I CYCGRG 3 cut(s) 615, 892, 938
BmgT120I GGNCC 5 cut(s) 644, 885, 1063, 1130, 1147
BmiI GGNNCC 2 cut(s) 1064, 1131
BmrI ACTGGG 1 cut(s) 546
BmsI GCATC 1 cut(s) 1011
BmuI ACTGGG 1 cut(s) 546
BpiI GAAGAC 1 cut(s) 811
BpmI CTGGAG 1 cut(s) 1161
Bpu10I CCTNAGC 2 cut(s) 146, 664
Bpu1102I GCTNAGC 1 cut(s) 577
BpuEI CTTGAG 2 cut(s) 29, 1079
BpuMI CCSGG 5 cut(s) 893, 894, 939, 940, 1053
BsaJI CCNNGG 9 cut(s) 139, 892, 893, 938, 992, 1014, 1073, 1133, 1166
BsaWI WCCGGW 1 cut(s) 324
BsaXI ACNNNNNCTCC 2 cut(s) 732, 762
Bsc4I CCNNNNNNNGG 4 cut(s) 894, 1059, 1139, 1250
Bse118I RCCGGY 1 cut(s) 1250
Bse1I ACTGG 2 cut(s) 541, 1066
BseBI CCWGG 6 cut(s) 573, 872, 1074, 1090, 1134, 1167
BseDI CCNNGG 9 cut(s) 139, 892, 893, 938, 992, 1014, 1073, 1133, 1166
BseLI CCNNNNNNNGG 4 cut(s) 894, 1059, 1139, 1250
BseMII CTCAG 5 cut(s) 160, 184, 221, 591, 705
BseNI ACTGG 2 cut(s) 541, 1066
BseXI GCAGC 2 cut(s) 431, 795
BseYI CCCAGC 1 cut(s) 1059
Bsh1236I CGCG 1 cut(s) 279
Bsh1285I CGRYCG 1 cut(s) 1251
BshFI GGCC 8 cut(s) 144, 645, 991, 1001, 1072, 1148, 1165, 1272
BsiEI CGRYCG 1 cut(s) 1251
BsiHKCI CYCGRG 3 cut(s) 615, 892, 938
BsiSI CCGG 6 cut(s) 325, 893, 939, 1053, 1251, 1269
BslFI GGGAC 1 cut(s) 1143
BslI CCNNNNNNNGG 4 cut(s) 894, 1059, 1139, 1250
BsmFI GGGAC 1 cut(s) 1143
BsnI GGCC 8 cut(s) 144, 645, 991, 1001, 1072, 1148, 1165, 1272
BsoBI CYCGRG 3 cut(s) 615, 892, 938
Bsp1407I TGTACA 1 cut(s) 672
Bsp143I GATC 2 cut(s) 380, 685
Bsp1720I GCTNAGC 1 cut(s) 577
Bsp19I CCATGG 1 cut(s) 992
Bsp68I TCGCGA 1 cut(s) 279
BspACI CCGC 9 cut(s) 96, 132, 455, 751, 810, 813, 844, 879, 1112
BspANI GGCC 8 cut(s) 144, 645, 991, 1001, 1072, 1148, 1165, 1272
BspCNI CTCAG 5 cut(s) 159, 183, 220, 590, 704
BspFNI CGCG 1 cut(s) 279
BspLI GGNNCC 2 cut(s) 1064, 1131
BspPI GGATC 1 cut(s) 388
BsrFI RCCGGY 1 cut(s) 1250
BsrGI TGTACA 1 cut(s) 672
BsrI ACTGG 2 cut(s) 541, 1066
BssAI RCCGGY 1 cut(s) 1250
BssECI CCNNGG 9 cut(s) 139, 892, 893, 938, 992, 1014, 1073, 1133, 1166
BssMI GATC 2 cut(s) 380, 685
BssT1I CCWWGG 1 cut(s) 992
Bst2UI CCWGG 6 cut(s) 573, 872, 1074, 1090, 1134, 1167
Bst4CI ACNGT 7 cut(s) 242, 349, 400, 592, 926, 974, 1210
Bst6I CTCTTC 1 cut(s) 685
BstAPI GCANNNNNTGC 1 cut(s) 368
BstAUI TGTACA 1 cut(s) 672
BstC8I GCNNGC 3 cut(s) 643, 848, 877
BstDEI CTNAG 7 cut(s) 89, 146, 170, 207, 577, 664, 691
BstDSI CCRYGG 3 cut(s) 139, 992, 1014
BstFNI CGCG 1 cut(s) 279
BstH2I RGCGCY 1 cut(s) 22
BstHHI GCGC 3 cut(s) 21, 192, 262
BstKTI GATC 2 cut(s) 383, 688
BstMBI GATC 2 cut(s) 380, 685
BstMCI CGRYCG 1 cut(s) 1251
BstMWI GCNNNNNNNGC 8 cut(s) 156, 368, 416, 560, 717, 1118, 1145, 1193
BstNI CCWGG 6 cut(s) 573, 872, 1074, 1090, 1134, 1167
BstSFI CTRYAG 5 cut(s) 700, 760, 925, 970, 1209
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 431, 795
BstV2I GAAGAC 1 cut(s) 811
BstXI CCANNNNNNTGG 1 cut(s) 1073
BsuRI GGCC 8 cut(s) 144, 645, 991, 1001, 1072, 1148, 1165, 1272
BtgI CCRYGG 3 cut(s) 139, 992, 1014
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 4 cut(s) 369, 588, 1073, 1206
BtuMI TCGCGA 1 cut(s) 279
Cac8I GCNNGC 3 cut(s) 643, 848, 877
CaiI CAGNNNCTG 1 cut(s) 647
CfoI GCGC 3 cut(s) 21, 192, 262
Cfr10I RCCGGY 1 cut(s) 1250
Cfr13I GGNCC 5 cut(s) 644, 885, 1063, 1130, 1147
Cfr9I CCCGGG 2 cut(s) 892, 938
CseI GACGC 1 cut(s) 538
Csp6I GTAC 2 cut(s) 673, 1204
CviAII CATG 7 cut(s) 7, 84, 110, 779, 993, 1175, 1236
CviQI GTAC 2 cut(s) 673, 1204
DdeI CTNAG 7 cut(s) 89, 146, 170, 207, 577, 664, 691
DpnI GATC 2 cut(s) 382, 687
DpnII GATC 2 cut(s) 380, 685
EaeI YGGCCR 1 cut(s) 1163
Eam1104I CTCTTC 1 cut(s) 685
EarI CTCTTC 1 cut(s) 685
EciI GGCGGA 1 cut(s) 740
Eco130I CCWWGG 1 cut(s) 992
Eco147I AGGCCT 1 cut(s) 1001
Eco47I GGWCC 3 cut(s) 885, 1063, 1130
Eco57I CTGAAG 3 cut(s) 320, 408, 1101
Eco88I CYCGRG 3 cut(s) 615, 892, 938
EcoO109I RGGNCCY 2 cut(s) 644, 1130
EcoRII CCWGG 6 cut(s) 571, 870, 1072, 1088, 1132, 1165
EcoT14I CCWWGG 1 cut(s) 992
ErhI CCWWGG 1 cut(s) 992
FaeI CATG 7 cut(s) 10, 87, 113, 782, 996, 1178, 1239
FalI AAGNNNNNCTT 2 cut(s) 893, 925
FaqI GGGAC 1 cut(s) 1143
FatI CATG 7 cut(s) 6, 83, 109, 778, 992, 1174, 1235
FauI CCCGC 2 cut(s) 448, 872
FbaI TGATCA 1 cut(s) 685
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 6 cut(s) 96, 132, 420, 784, 810, 813
Fsp4HI GCNGC 6 cut(s) 96, 132, 420, 784, 810, 813
FspBI CTAG 4 cut(s) 23, 156, 546, 1008
GlaI GCGC 3 cut(s) 20, 191, 261
GluI GCNGC 6 cut(s) 96, 132, 420, 784, 810, 813
GsaI CCCAGC 1 cut(s) 1063
GsuI CTGGAG 1 cut(s) 1161
HaeII RGCGCY 1 cut(s) 22
HaeIII GGCC 8 cut(s) 144, 645, 991, 1001, 1072, 1148, 1165, 1272
HapII CCGG 6 cut(s) 325, 893, 939, 1053, 1251, 1269
HgaI GACGC 1 cut(s) 538
HhaI GCGC 3 cut(s) 21, 192, 262
Hin1II CATG 7 cut(s) 10, 87, 113, 782, 996, 1178, 1239
Hin6I GCGC 3 cut(s) 19, 190, 260
HinP1I GCGC 3 cut(s) 19, 190, 260
HincII GTYRAC 2 cut(s) 178, 238
HindII GTYRAC 2 cut(s) 178, 238
HindIII AAGCTT 1 cut(s) 1083
HinfI GANTC 4 cut(s) 166, 542, 606, 931
HpaII CCGG 6 cut(s) 325, 893, 939, 1053, 1251, 1269
HphI GGTGA 3 cut(s) 1030, 1049, 1168
Hpy166II GTNNAC 3 cut(s) 178, 238, 1206
Hpy188I TCNGA 6 cut(s) 163, 406, 685, 803, 889, 946
Hpy188III TCNNGA 5 cut(s) 46, 278, 617, 823, 919
Hpy8I GTNNAC 3 cut(s) 178, 238, 1206
Hpy99I CGWCG 1 cut(s) 554
HpyAV CCTTC 3 cut(s) 445, 991, 1254
HpyCH4III ACNGT 7 cut(s) 242, 349, 400, 592, 926, 974, 1210
HpyCH4IV ACGT 4 cut(s) 116, 500, 1041, 1125
HpyCH4V TGCA 4 cut(s) 120, 371, 831, 1024
HpyF10VI GCNNNNNNNGC 8 cut(s) 156, 368, 416, 560, 717, 1118, 1145, 1193
HpyF3I CTNAG 7 cut(s) 89, 146, 170, 207, 577, 664, 691
HpySE526I ACGT 4 cut(s) 116, 500, 1041, 1125
Hsp92II CATG 7 cut(s) 10, 87, 113, 782, 996, 1178, 1239
HspAI GCGC 3 cut(s) 19, 190, 260
Ksp22I TGATCA 1 cut(s) 685
Kzo9I GATC 2 cut(s) 380, 685
LmnI GCTCC 3 cut(s) 164, 1054, 1184
Lsp1109I GCAGC 2 cut(s) 431, 795
LweI GCATC 1 cut(s) 1011
MaeI CTAG 4 cut(s) 23, 156, 546, 1008
MaeII ACGT 4 cut(s) 116, 500, 1041, 1125
MaeIII GTNAC 7 cut(s) 244, 592, 770, 1037, 1098, 1214, 1255
MalI GATC 2 cut(s) 382, 687
MboI GATC 2 cut(s) 380, 685
MboII GAAGA 6 cut(s) 277, 331, 672, 790, 811, 832
MlsI TGGCCA 1 cut(s) 1165
MluCI AATT 2 cut(s) 273, 755
MluNI TGGCCA 1 cut(s) 1165
MmeI TCCRAC 3 cut(s) 384, 912, 1053
Mox20I TGGCCA 1 cut(s) 1165
MroXI GAANNNNTTC 1 cut(s) 520
MscI TGGCCA 1 cut(s) 1165
MseI TTAA 2 cut(s) 477, 960
Msp20I TGGCCA 1 cut(s) 1165
MspI CCGG 6 cut(s) 325, 893, 939, 1053, 1251, 1269
MvaI CCWGG 6 cut(s) 573, 872, 1074, 1090, 1134, 1167
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 8 cut(s) 156, 368, 416, 560, 717, 1118, 1145, 1193
NciI CCSGG 5 cut(s) 893, 894, 939, 940, 1053
NcoI CCATGG 1 cut(s) 992
NdeII GATC 2 cut(s) 380, 685
NlaIII CATG 7 cut(s) 10, 87, 113, 782, 996, 1178, 1239
NlaIV GGNNCC 2 cut(s) 1064, 1131
NmuCI GTSAC 4 cut(s) 770, 1037, 1098, 1255
NruI TCGCGA 1 cut(s) 279
PaeR7I CTCGAG 1 cut(s) 615
PceI AGGCCT 1 cut(s) 1001
PcsI WCGNNNNNNNCGW 2 cut(s) 813, 1011
PdmI GAANNNNTTC 1 cut(s) 520
PfeI GAWTC 4 cut(s) 166, 542, 606, 931
PflFI GACNNNGTC 2 cut(s) 7, 400
PkrI GCNGC 6 cut(s) 97, 133, 421, 785, 811, 814
PpuMI RGGWCCY 1 cut(s) 1130
PsiI TTATAA 1 cut(s) 465
Psp5II RGGWCCY 1 cut(s) 1130
Psp6I CCWGG 6 cut(s) 571, 870, 1072, 1088, 1132, 1165
PspFI CCCAGC 1 cut(s) 1059
PspGI CCWGG 6 cut(s) 571, 870, 1072, 1088, 1132, 1165
PspN4I GGNNCC 2 cut(s) 1064, 1131
PspPI GGNCC 5 cut(s) 644, 885, 1063, 1130, 1147
PspPPI RGGWCCY 1 cut(s) 1130
PstNI CAGNNNCTG 1 cut(s) 647
PsyI GACNNNGTC 2 cut(s) 7, 400
RruI TCGCGA 1 cut(s) 279
RsaI GTAC 2 cut(s) 674, 1205
RsaNI GTAC 2 cut(s) 673, 1204
SalI GTCGAC 1 cut(s) 176
SaqAI TTAA 2 cut(s) 477, 960
SatI GCNGC 6 cut(s) 96, 132, 420, 784, 810, 813
Sau3AI GATC 2 cut(s) 380, 685
Sau96I GGNCC 5 cut(s) 644, 885, 1063, 1130, 1147
SfaNI GCATC 1 cut(s) 1011
SfcI CTRYAG 5 cut(s) 700, 760, 925, 970, 1209
Sfr274I CTCGAG 1 cut(s) 615
SinI GGWCC 3 cut(s) 885, 1063, 1130
SlaI CTCGAG 1 cut(s) 615
SmaI CCCGGG 2 cut(s) 894, 940
SmlI CTYRAG 3 cut(s) 44, 615, 1094
SmoI CTYRAG 3 cut(s) 44, 615, 1094
Sse9I AATT 2 cut(s) 273, 755
SseBI AGGCCT 1 cut(s) 1001
SsiI CCGC 9 cut(s) 96, 132, 455, 751, 810, 813, 844, 879, 1112
SspMI CTAG 4 cut(s) 23, 156, 546, 1008
StuI AGGCCT 1 cut(s) 1001
StyI CCWWGG 1 cut(s) 992
TaaI ACNGT 7 cut(s) 242, 349, 400, 592, 926, 974, 1210
TaiI ACGT 4 cut(s) 119, 503, 1044, 1128
TaqI TCGA 4 cut(s) 177, 616, 789, 1247
TasI AATT 2 cut(s) 273, 755
TatI WGTACW 2 cut(s) 672, 1203
TauI GCSGC 4 cut(s) 98, 134, 812, 815
TfiI GAWTC 4 cut(s) 166, 542, 606, 931
Tru1I TTAA 2 cut(s) 477, 960
Tru9I TTAA 2 cut(s) 477, 960
TscAI CASTG 4 cut(s) 369, 595, 1073, 1213
TseFI GTSAC 4 cut(s) 770, 1037, 1098, 1255
TseI GCWGC 2 cut(s) 419, 783
Tsp45I GTSAC 4 cut(s) 770, 1037, 1098, 1255
TspDTI ATGAA 6 cut(s) 126, 598, 767, 784, 1163, 1224
TspGWI ACGGA 2 cut(s) 904, 1265
TspMI CCCGGG 2 cut(s) 892, 938
TspRI CASTG 4 cut(s) 369, 595, 1073, 1213
Tth111I GACNNNGTC 2 cut(s) 7, 400
VpaK11BI GGWCC 3 cut(s) 885, 1063, 1130
XhoI CTCGAG 1 cut(s) 615
XmaI CCCGGG 2 cut(s) 892, 938
XmiI GTMKAC 1 cut(s) 177
XmnI GAANNNNTTC 1 cut(s) 520
XspI CTAG 4 cut(s) 23, 156, 546, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.