Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005996.1

Orthogroup ID

OG0009155

Physical Location & Seq

Genomic Coordinates Reverse (-)

174351 .. 176326

Gene Structure 1976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005996.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ctgtgccaatccttgatcaaagaccactgcctctatgcacgatgcaaccgcatcagattctggcagaaagatgtctgcacttgcccagccaaccagccaccaacactcaccaatcaacaaacagagtccagccaccagtctcctagtcctcaaacatgtcgatcacccagcaccgcacaaaaccagatcgaaaatagtaagaagccctcgccgtccatccaaaagccagtcatgatctcgtcctacctcccacgcccatcaaactggctgctcctctcgcaaggagatgggttcatagctcgagatattggtttccaaaacacaacaggccctgatggagaacaagccttatctctgtacatctcttctgatcactcagtcctctattctacagagaatgtgacatccacggcagcatcgatttcatcttcggaaacgccatcgtcgtattccagagttgcaatctcgtcttccgtaggcacaagggctacaatttcatatcttgggaggccatggaaggcctacgctaaagttgtggtgatgcagttcaacatagacgacgttatcacacccagtgtctgggttcagtggcttgggggtggaggttccagcctcaagttagtcaccctactttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

212

Amino Acids

23.15

Weight (kDa)

8.7

Isoelectric Point (pI)

56.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20860 AT5G20860
fragaria_vesca	FvH4_1g09560
malus_domestica	MD02G1104200.v1.1
prunus_persica	Prupe.7G190700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0096331 RchiOBHm_Chr2g0096371
rosa_laevigata	RLG00000016634 RLG00000016637
rosa_multiflora	Rmu_sc0004244.1_g000006 Rmu_sc0005996.1_g000024 Rmu_sc0005996.1_g000034
rosa_roxburghii	Rroxscaffold_2G00145670
rosa_rugosa	Rorug02G0057600 Rorug02G0057700 Rorug02G0057700
rosa_samantha	Rh2AG104500 Rh2BG106600 Rh2CG108500 Rh2DG107400
rosa_wichuraiana	Rw2G008050 Rw2G008060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	579
AciI	CCGC	2 cut(s)	49, 174
AdeI	CACNNNGTG	1 cut(s)	575
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	579
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	550
AluBI	AGCT	1 cut(s)	299
AluI	AGCT	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	144
AlwNI	CAGNNNCTG	3 cut(s)	60, 332, 579
Ama87I	CYCGRG	1 cut(s)	300
AoxI	GGCC	3 cut(s)	328, 509, 519
ApeKI	GCWGC	2 cut(s)	268, 413
AspS9I	GGNCC	1 cut(s)	329
AsuHPI	GGTGA	4 cut(s)	100, 156, 550, 616
AvaI	CYCGRG	1 cut(s)	300
BbsI	GAAGAC	1 cut(s)	462
BbvI	GCAGC	2 cut(s)	255, 425
BccI	CCATC	5 cut(s)	224, 265, 281, 329, 448
BceAI	ACGGC	2 cut(s)	196, 426
BclI	TGATCA	2 cut(s)	15, 370
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	390
BisI	GCNGC	2 cut(s)	269, 414
BlsI	GCNGC	2 cut(s)	270, 415
BmeT110I	CYCGRG	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	329
BmiI	GGNNCC	1 cut(s)	607
BmrI	ACTGGG	1 cut(s)	567
BmsI	GCATC	4 cut(s)	32, 60, 425, 531
BmuI	ACTGGG	1 cut(s)	567
BpiI	GAAGAC	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	599
Bsa29I	ATCGAT	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	408, 512
Bsc4I	CCNNNNNNNGG	1 cut(s)	579
Bse1I	ACTGG	4 cut(s)	136, 227, 269, 573
BseCI	ATCGAT	1 cut(s)	419
BseDI	CCNNGG	2 cut(s)	408, 512
BseGI	GGATG	2 cut(s)	216, 404
BseLI	CCNNNNNNNGG	1 cut(s)	579
BseMII	CTCAG	1 cut(s)	390
BseNI	ACTGG	4 cut(s)	136, 227, 269, 573
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	255, 425
BseYI	CCCAGC	2 cut(s)	85, 167
BsgI	GTGCAG	1 cut(s)	61
BshFI	GGCC	3 cut(s)	330, 511, 521
BshVI	ATCGAT	1 cut(s)	419
BsiHKCI	CYCGRG	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	579
BsmAI	GTCTC	1 cut(s)	144
BsnI	GGCC	3 cut(s)	330, 511, 521
BsoBI	CYCGRG	1 cut(s)	300
Bsp1407I	TGTACA	1 cut(s)	357
Bsp143I	GATC	5 cut(s)	15, 161, 186, 234, 370
Bsp19I	CCATGG	1 cut(s)	512
BspACI	CCGC	2 cut(s)	49, 174
BspANI	GGCC	3 cut(s)	330, 511, 521
BspCNI	CTCAG	1 cut(s)	389
BspDI	ATCGAT	1 cut(s)	419
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	607
BsrGI	TGTACA	1 cut(s)	357
BsrI	ACTGG	4 cut(s)	136, 227, 269, 573
BssECI	CCNNGG	2 cut(s)	408, 512
BssMI	GATC	5 cut(s)	15, 161, 186, 234, 370
BssT1I	CCWWGG	1 cut(s)	512
Bst6I	CTCTTC	1 cut(s)	370
BstAUI	TGTACA	1 cut(s)	357
BstDEI	CTNAG	1 cut(s)	376
BstDSI	CCRYGG	2 cut(s)	408, 512
BstF5I	GGATG	2 cut(s)	216, 404
BstKTI	GATC	5 cut(s)	18, 164, 189, 237, 373
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	5 cut(s)	15, 161, 186, 234, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNSI	RCATGY	1 cut(s)	159
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	255, 425
BstV2I	GAAGAC	1 cut(s)	462
BstXI	CCANNNNNNTGG	1 cut(s)	264
Bsu15I	ATCGAT	1 cut(s)	419
BsuRI	GGCC	3 cut(s)	330, 511, 521
BsuTUI	ATCGAT	1 cut(s)	419
BtgI	CCRYGG	2 cut(s)	408, 512
BtsCI	GGATG	2 cut(s)	216, 404
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	3 cut(s)	25, 580, 593
CaiI	CAGNNNCTG	3 cut(s)	60, 332, 579
CciI	TCATGA	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	329
ClaI	ATCGAT	1 cut(s)	419
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	3 cut(s)	156, 232, 513
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	1 cut(s)	376
DpnI	GATC	5 cut(s)	17, 163, 188, 236, 372
DpnII	GATC	5 cut(s)	15, 161, 186, 234, 370
DraIII	CACNNNGTG	1 cut(s)	575
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	512
Eco147I	AGGCCT	1 cut(s)	521
Eco88I	CYCGRG	1 cut(s)	300
EcoO109I	RGGNCCY	1 cut(s)	329
EcoT14I	CCWWGG	1 cut(s)	512
ErhI	CCWWGG	1 cut(s)	512
FaeI	CATG	3 cut(s)	159, 235, 516
FaiI	YATR	7 cut(s)	36, 157, 233, 296, 499, 514, 554
FatI	CATG	3 cut(s)	155, 231, 512
FbaI	TGATCA	2 cut(s)	15, 370
Fnu4HI	GCNGC	2 cut(s)	269, 414
FokI	GGATG	2 cut(s)	203, 391
Fsp4HI	GCNGC	2 cut(s)	269, 414
FspBI	CTAG	1 cut(s)	144
GluI	GCNGC	2 cut(s)	269, 414
GsaI	CCCAGC	2 cut(s)	89, 171
HaeIII	GGCC	3 cut(s)	330, 511, 521
Hin1II	CATG	3 cut(s)	159, 235, 516
HinfI	GANTC	2 cut(s)	57, 125
HphI	GGTGA	4 cut(s)	100, 156, 550, 616
Hpy188I	TCNGA	3 cut(s)	56, 370, 433
Hpy188III	TCNNGA	3 cut(s)	232, 302, 453
Hpy99I	CGWCG	2 cut(s)	448, 563
HpyAV	CCTTC	1 cut(s)	511
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	5 cut(s)	38, 45, 78, 461, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	1 cut(s)	376
HpySE526I	ACGT	1 cut(s)	561
Hsp92II	CATG	3 cut(s)	159, 235, 516
Ksp22I	TGATCA	2 cut(s)	15, 370
Kzo9I	GATC	5 cut(s)	15, 161, 186, 234, 370
LmnI	GCTCC	1 cut(s)	276
Lsp1109I	GCAGC	2 cut(s)	255, 425
LweI	GCATC	4 cut(s)	32, 60, 425, 531
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	2 cut(s)	400, 622
MalI	GATC	5 cut(s)	17, 163, 188, 236, 372
MboI	GATC	5 cut(s)	15, 161, 186, 234, 370
MboII	GAAGA	3 cut(s)	357, 420, 462
MluCI	AATT	1 cut(s)	492
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	9 cut(s)	41, 159, 217, 257, 284, 392, 501, 596, 623
MwoI	GCNNNNNNNGC	1 cut(s)	277
NcoI	CCATGG	1 cut(s)	512
NdeII	GATC	5 cut(s)	15, 161, 186, 234, 370
NlaIII	CATG	3 cut(s)	159, 235, 516
NlaIV	GGNNCC	1 cut(s)	607
NmuCI	GTSAC	2 cut(s)	400, 622
NspI	RCATGY	1 cut(s)	159
PaeR7I	CTCGAG	1 cut(s)	300
PagI	TCATGA	1 cut(s)	231
PceI	AGGCCT	1 cut(s)	521
PciI	ACATGT	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	2 cut(s)	416, 443
PfeI	GAWTC	1 cut(s)	57
PflMI	CCANNNNNTGG	1 cut(s)	579
PkrI	GCNGC	2 cut(s)	270, 415
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PscI	ACATGT	1 cut(s)	155
PspFI	CCCAGC	2 cut(s)	85, 167
PspN4I	GGNNCC	1 cut(s)	607
PspPI	GGNCC	1 cut(s)	329
PstNI	CAGNNNCTG	3 cut(s)	60, 332, 579
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
SatI	GCNGC	2 cut(s)	269, 414
Sau3AI	GATC	5 cut(s)	15, 161, 186, 234, 370
Sau96I	GGNCC	1 cut(s)	329
SchI	GAGTC	1 cut(s)	134
SetI	ASST	4 cut(s)	249, 301, 564, 607
SfaNI	GCATC	4 cut(s)	32, 60, 425, 531
SfcI	CTRYAG	1 cut(s)	390
Sfr274I	CTCGAG	1 cut(s)	300
SlaI	CTCGAG	1 cut(s)	300
SmlI	CTYRAG	2 cut(s)	300, 614
SmoI	CTYRAG	2 cut(s)	300, 614
Sse9I	AATT	1 cut(s)	492
SseBI	AGGCCT	1 cut(s)	521
SsiI	CCGC	2 cut(s)	49, 174
SspMI	CTAG	1 cut(s)	144
StuI	AGGCCT	1 cut(s)	521
StyI	CCWWGG	1 cut(s)	512
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	4 cut(s)	160, 189, 301, 419
TasI	AATT	1 cut(s)	492
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	1 cut(s)	57
TscAI	CASTG	3 cut(s)	32, 580, 593
TseFI	GTSAC	2 cut(s)	400, 622
TseI	GCWGC	2 cut(s)	268, 413
Tsp45I	GTSAC	2 cut(s)	400, 622
TspDTI	ATGAA	3 cut(s)	283, 414, 486
TspGWI	ACGGA	1 cut(s)	463
TspRI	CASTG	3 cut(s)	32, 580, 593
Van91I	CCANNNNNTGG	1 cut(s)	579
XceI	RCATGY	1 cut(s)	159
XhoI	CTCGAG	1 cut(s)	300
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.