Rh2CG108500

Pectinesterase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
9555955 .. 9559764
3810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG108500.1

Sequence Viewer

Length: 1281 bp
ATGACCATGTCCTTGAAGCGCTTAGACCAATCCCTGATAGCTCTCAAGAAGTCTCCCTTGAAAAAAAAGCAAGACATTCAGGCATGGCTAAGTGCCGCCTTGACTTTCGAAGAAACGTGCAAGGACTACGCCGCCGACCACGGCCTCAGCCTCACTAGCTCCGAGAATCTCAGGGTCGACCTTTCCAAGCGCATAGATTATGCCTTTCAGTTGGGAAGTAATCTATTAGCTCTCGTCAACCGTGTTACAAGTATCGGTACGCCGAAGAACACAATTCGCGATAAACAAGCAGAGGTTTTTCCCAAATGGGTTTCGCCGAAGAACCGGAAACTACTTCAGGCAACGACAGTCAAAGCGAACGCAGTGGTTGCACAAGATGGATCAGGGAACTATAAGACTGTGTCGGAGGCTATTCAGGCAGCTTCAGGGGGTCGGTTTGTGATTTATGTGAAGGCGGGAGTTTATAAGGAAAAGATTAAGACTAACAAAGATGGTATTACGTTGATTGGAGATGGAAAGTATTCGACTATTATTACTGGGGATTCTAGCGTCGCTAAAGGTGCTTCGATGCCTGGCTCAGCTACATTCACCGTAACAGGAGATGGGTTCATAGCTCGAGATATTGGTTTCCAAAACACAGCAGGCCCTGATGGAGAACAAGCCTTAGCTCTGTACATCTCTTCTGATCACTCAGTTCTCTACAAGTGTAGCATTGTTGGCTACCAAGACACACTCTACGCACTCGCCCTCCGCCAATTCTACAGAGAATGTGATATTCATGGCAGCCTCGACTTCATCTTCGGAAACGCCGCCGCCGTCTTCCAGAGTTGCAATCTTATCTTCCGCAGGCACAAGGGCTATGGTGCTATCCTGGCAAGCGGGAGGTCCGACCCGGGGCAAAAGACGGGCTTCTCCGTCCAGAACTGTAGGATTCTGCCCGGGTCAGACTTATCTCCTGTTAAACATTCCTACAGTTCGTATCTTGGGAGGCCATGGAAGGCCTACGCTAGAGCCGTGGTGATGCAGTCCAACATAGACGACGTTATCGCTCCCAGAGGCTGGGTCGAGTGGCCTGGGGCTGGAGGTTCCAGCCTCAAGTCACTCTACTTTGCGGAGTTCGCAAACATGGGGCCTGGGGCTGGAGTGGCCCAGAGGGTGCAGTGGCCAGGGTTTCATGTTATTGGAGCTGATATTGCTGTTGAGTACACTGTAGGTAACTTTATTGGTGGAACTTCATGGCTGCCTTCGACTGGTGTGGCTTTTGTTTCTGGCCTCCATTGA

Protein Analysis

426

Amino Acids

45.9

Weight (kDa)

9.31

Isoelectric Point (pI)

33.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 3 - 78 1.7e-08 Plant invertase/pectin methylesterase inhibitor
Pectinesterase PF01095 120 - 410 1.3e-114 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
AccB7I CCANNNNNTGG 1 cut(s) 1059
AccI GTMKAC 1 cut(s) 177
AccII CGCG 1 cut(s) 279
AciI CCGC 9 cut(s) 96, 132, 455, 751, 810, 813, 844, 879, 1112
AclWI GGATC 1 cut(s) 388
AcoI YGGCCR 1 cut(s) 1163
AcuI CTGAAG 2 cut(s) 320, 408
AfaI GTAC 3 cut(s) 259, 674, 1205
AfeI AGCGCT 1 cut(s) 20
AfiI CCNNNNNNNGG 5 cut(s) 894, 1059, 1079, 1139, 1250
AgsI TTSAA 2 cut(s) 16, 61
AjnI CCWGG 5 cut(s) 571, 870, 1072, 1132, 1165
AluBI AGCT 8 cut(s) 41, 159, 230, 422, 581, 614, 668, 1187
AluI AGCT 8 cut(s) 41, 159, 230, 422, 581, 614, 668, 1187
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 1 cut(s) 388
AlwNI CAGNNNCTG 2 cut(s) 647, 1059
Ama87I CYCGRG 3 cut(s) 615, 892, 938
Aor51HI AGCGCT 1 cut(s) 20
AoxI GGCC 9 cut(s) 142, 643, 989, 999, 1070, 1130, 1146, 1163, 1270
ApeKI GCWGC 3 cut(s) 419, 783, 1240
ArsI GACNNNNNNTTYG 2 cut(s) 782, 814
Asp700I GAANNNNTTC 1 cut(s) 520
AspLEI GCGC 2 cut(s) 21, 192
AspS9I GGNCC 4 cut(s) 644, 885, 1130, 1147
AsuC2I CCSGG 4 cut(s) 893, 894, 939, 940
AsuHPI GGTGA 2 cut(s) 580, 1030
AsuII TTCGAA 1 cut(s) 108
AvaI CYCGRG 3 cut(s) 615, 892, 938
AvaII GGWCC 1 cut(s) 885
BalI TGGCCA 1 cut(s) 1165
BbsI GAAGAC 1 cut(s) 811
BbvCI CCTCAGC 1 cut(s) 146
BbvI GCAGC 3 cut(s) 431, 795, 1227
BccI CCATC 5 cut(s) 371, 485, 506, 596, 644
BceAI ACGGC 3 cut(s) 157, 800, 998
BciT130I CCWGG 5 cut(s) 573, 872, 1074, 1134, 1167
BclI TGATCA 1 cut(s) 685
BcnI CCSGG 4 cut(s) 893, 894, 939, 940
BcoDI GTCTC 1 cut(s) 57
BfaI CTAG 3 cut(s) 156, 546, 1008
BfmI CTRYAG 4 cut(s) 760, 925, 970, 1209
BfoI RGCGCY 1 cut(s) 22
BisI GCNGC 7 cut(s) 96, 132, 420, 784, 810, 813, 1241
BlpI GCTNAGC 1 cut(s) 577
BlsI GCNGC 7 cut(s) 97, 133, 421, 785, 811, 814, 1242
Bme1390I CCNGG 9 cut(s) 573, 872, 893, 894, 939, 940, 1074, 1134, 1167
Bme18I GGWCC 1 cut(s) 885
BmeT110I CYCGRG 3 cut(s) 615, 892, 938
BmgT120I GGNCC 4 cut(s) 644, 885, 1130, 1147
BmiI GGNNCC 2 cut(s) 1087, 1131
BmrFI CCNGG 9 cut(s) 573, 872, 893, 894, 939, 940, 1074, 1134, 1167
BmrI ACTGGG 1 cut(s) 546
BmsI GCATC 2 cut(s) 558, 1011
BmuI ACTGGG 1 cut(s) 546
BpiI GAAGAC 1 cut(s) 811
BpmI CTGGAG 2 cut(s) 1101, 1161
Bpu10I CCTNAGC 2 cut(s) 146, 664
Bpu1102I GCTNAGC 1 cut(s) 577
Bpu14I TTCGAA 1 cut(s) 108
BpuEI CTTGAG 2 cut(s) 29, 1079
BpuMI CCSGG 4 cut(s) 893, 894, 939, 940
BsaJI CCNNGG 9 cut(s) 139, 892, 893, 938, 992, 1014, 1073, 1133, 1166
BsaWI WCCGGW 1 cut(s) 324
BsaXI ACNNNNNCTCC 2 cut(s) 732, 762
Bsc4I CCNNNNNNNGG 5 cut(s) 894, 1059, 1079, 1139, 1250
Bse1I ACTGG 2 cut(s) 541, 1255
BseBI CCWGG 5 cut(s) 573, 872, 1074, 1134, 1167
BseDI CCNNGG 9 cut(s) 139, 892, 893, 938, 992, 1014, 1073, 1133, 1166
BseLI CCNNNNNNNGG 5 cut(s) 894, 1059, 1079, 1139, 1250
BseMII CTCAG 4 cut(s) 160, 184, 591, 705
BseNI ACTGG 2 cut(s) 541, 1255
BseXI GCAGC 3 cut(s) 431, 795, 1227
BseYI CCCAGC 1 cut(s) 1059
BsgI GTGCAG 1 cut(s) 1178
Bsh1236I CGCG 1 cut(s) 279
BshFI GGCC 9 cut(s) 144, 645, 991, 1001, 1072, 1132, 1148, 1165, 1272
BsiHKCI CYCGRG 3 cut(s) 615, 892, 938
BsiSI CCGG 3 cut(s) 325, 893, 939
BslI CCNNNNNNNGG 5 cut(s) 894, 1059, 1079, 1139, 1250
BsmAI GTCTC 1 cut(s) 57
BsnI GGCC 9 cut(s) 144, 645, 991, 1001, 1072, 1132, 1148, 1165, 1272
BsoBI CYCGRG 3 cut(s) 615, 892, 938
Bsp119I TTCGAA 1 cut(s) 108
Bsp1407I TGTACA 1 cut(s) 672
Bsp143I GATC 2 cut(s) 380, 685
Bsp1720I GCTNAGC 1 cut(s) 577
Bsp19I CCATGG 1 cut(s) 992
Bsp68I TCGCGA 1 cut(s) 279
BspACI CCGC 9 cut(s) 96, 132, 455, 751, 810, 813, 844, 879, 1112
BspANI GGCC 9 cut(s) 144, 645, 991, 1001, 1072, 1132, 1148, 1165, 1272
BspCNI CTCAG 4 cut(s) 159, 183, 590, 704
BspFNI CGCG 1 cut(s) 279
BspLI GGNNCC 2 cut(s) 1087, 1131
BspPI GGATC 1 cut(s) 388
BspT104I TTCGAA 1 cut(s) 108
BsrGI TGTACA 1 cut(s) 672
BsrI ACTGG 2 cut(s) 541, 1255
BssECI CCNNGG 9 cut(s) 139, 892, 893, 938, 992, 1014, 1073, 1133, 1166
BssMI GATC 2 cut(s) 380, 685
BssT1I CCWWGG 1 cut(s) 992
Bst2UI CCWGG 5 cut(s) 573, 872, 1074, 1134, 1167
Bst4CI ACNGT 7 cut(s) 242, 349, 400, 592, 926, 974, 1210
Bst6I CTCTTC 1 cut(s) 685
BstAPI GCANNNNNTGC 1 cut(s) 368
BstAUI TGTACA 1 cut(s) 672
BstBI TTCGAA 1 cut(s) 108
BstC8I GCNNGC 3 cut(s) 643, 848, 877
BstDEI CTNAG 7 cut(s) 22, 89, 146, 170, 577, 664, 691
BstDSI CCRYGG 3 cut(s) 139, 992, 1014
BstFNI CGCG 1 cut(s) 279
BstH2I RGCGCY 1 cut(s) 22
BstHHI GCGC 2 cut(s) 21, 192
BstKTI GATC 2 cut(s) 383, 688
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 2 cut(s) 380, 685
BstMWI GCNNNNNNNGC 9 cut(s) 156, 368, 416, 560, 717, 872, 1118, 1145, 1193
BstNI CCWGG 5 cut(s) 573, 872, 1074, 1134, 1167
BstSCI CCNGG 9 cut(s) 571, 870, 891, 892, 937, 938, 1072, 1132, 1165
BstSFI CTRYAG 4 cut(s) 760, 925, 970, 1209
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 3 cut(s) 431, 795, 1227
BstV2I GAAGAC 1 cut(s) 811
BsuRI GGCC 9 cut(s) 144, 645, 991, 1001, 1072, 1132, 1148, 1165, 1272
BtgI CCRYGG 3 cut(s) 139, 992, 1014
BtsI GCAGTG 2 cut(s) 369, 1166
BtsIMutI CAGTG 3 cut(s) 369, 1166, 1206
BtuMI TCGCGA 1 cut(s) 279
Cac8I GCNNGC 3 cut(s) 643, 848, 877
CaiI CAGNNNCTG 2 cut(s) 647, 1059
CfoI GCGC 2 cut(s) 21, 192
Cfr13I GGNCC 4 cut(s) 644, 885, 1130, 1147
Cfr9I CCCGGG 2 cut(s) 892, 938
CseI GACGC 1 cut(s) 538
Csp6I GTAC 3 cut(s) 258, 673, 1204
CviAII CATG 7 cut(s) 7, 84, 779, 993, 1126, 1175, 1236
CviQI GTAC 3 cut(s) 258, 673, 1204
DdeI CTNAG 7 cut(s) 22, 89, 146, 170, 577, 664, 691
DpnI GATC 2 cut(s) 382, 687
DpnII GATC 2 cut(s) 380, 685
EaeI YGGCCR 1 cut(s) 1163
Eam1104I CTCTTC 1 cut(s) 685
EarI CTCTTC 1 cut(s) 685
EciI GGCGGA 1 cut(s) 740
Eco130I CCWWGG 1 cut(s) 992
Eco147I AGGCCT 1 cut(s) 1001
Eco47I GGWCC 1 cut(s) 885
Eco47III AGCGCT 1 cut(s) 20
Eco57I CTGAAG 2 cut(s) 320, 408
Eco88I CYCGRG 3 cut(s) 615, 892, 938
EcoO109I RGGNCCY 2 cut(s) 644, 1130
EcoRII CCWGG 5 cut(s) 571, 870, 1072, 1132, 1165
EcoT14I CCWWGG 1 cut(s) 992
ErhI CCWWGG 1 cut(s) 992
FaeI CATG 7 cut(s) 10, 87, 782, 996, 1129, 1178, 1239
FalI AAGNNNNNCTT 4 cut(s) 41, 73, 893, 925
FatI CATG 7 cut(s) 6, 83, 778, 992, 1125, 1174, 1235
FauI CCCGC 2 cut(s) 448, 872
FbaI TGATCA 1 cut(s) 685
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 7 cut(s) 96, 132, 420, 784, 810, 813, 1241
Fsp4HI GCNGC 7 cut(s) 96, 132, 420, 784, 810, 813, 1241
FspBI CTAG 3 cut(s) 156, 546, 1008
GlaI GCGC 2 cut(s) 20, 191
GluI GCNGC 7 cut(s) 96, 132, 420, 784, 810, 813, 1241
GsaI CCCAGC 1 cut(s) 1063
GsuI CTGGAG 2 cut(s) 1101, 1161
HaeII RGCGCY 1 cut(s) 22
HaeIII GGCC 9 cut(s) 144, 645, 991, 1001, 1072, 1132, 1148, 1165, 1272
HapII CCGG 3 cut(s) 325, 893, 939
HgaI GACGC 1 cut(s) 538
HhaI GCGC 2 cut(s) 21, 192
Hin1II CATG 7 cut(s) 10, 87, 782, 996, 1129, 1178, 1239
Hin6I GCGC 2 cut(s) 19, 190
HinP1I GCGC 2 cut(s) 19, 190
HincII GTYRAC 2 cut(s) 178, 238
HindII GTYRAC 2 cut(s) 178, 238
HinfI GANTC 3 cut(s) 166, 542, 931
HpaII CCGG 3 cut(s) 325, 893, 939
HphI GGTGA 2 cut(s) 580, 1030
Hpy166II GTNNAC 3 cut(s) 178, 238, 1206
Hpy188I TCNGA 6 cut(s) 163, 406, 685, 803, 889, 946
Hpy188III TCNNGA 5 cut(s) 46, 278, 617, 823, 919
Hpy8I GTNNAC 3 cut(s) 178, 238, 1206
Hpy99I CGWCG 2 cut(s) 554, 1043
HpyAV CCTTC 3 cut(s) 445, 991, 1254
HpyCH4III ACNGT 7 cut(s) 242, 349, 400, 592, 926, 974, 1210
HpyCH4IV ACGT 3 cut(s) 116, 500, 1041
HpyCH4V TGCA 5 cut(s) 120, 371, 831, 1024, 1159
HpyF10VI GCNNNNNNNGC 9 cut(s) 156, 368, 416, 560, 717, 872, 1118, 1145, 1193
HpyF3I CTNAG 7 cut(s) 22, 89, 146, 170, 577, 664, 691
HpySE526I ACGT 3 cut(s) 116, 500, 1041
Hsp92II CATG 7 cut(s) 10, 87, 782, 996, 1129, 1178, 1239
HspAI GCGC 2 cut(s) 19, 190
Ksp22I TGATCA 1 cut(s) 685
Kzo9I GATC 2 cut(s) 380, 685
LmnI GCTCC 3 cut(s) 164, 1054, 1184
Lsp1109I GCAGC 3 cut(s) 431, 795, 1227
LweI GCATC 2 cut(s) 558, 1011
MaeI CTAG 3 cut(s) 156, 546, 1008
MaeII ACGT 3 cut(s) 116, 500, 1041
MaeIII GTNAC 4 cut(s) 244, 592, 1098, 1214
MalI GATC 2 cut(s) 382, 687
MboI GATC 2 cut(s) 380, 685
MboII GAAGA 7 cut(s) 122, 277, 331, 672, 790, 811, 832
MlsI TGGCCA 1 cut(s) 1165
MluCI AATT 2 cut(s) 273, 755
MluNI TGGCCA 1 cut(s) 1165
MmeI TCCRAC 3 cut(s) 384, 912, 1053
Mox20I TGGCCA 1 cut(s) 1165
MroXI GAANNNNTTC 1 cut(s) 520
MscI TGGCCA 1 cut(s) 1165
MseI TTAA 2 cut(s) 477, 960
Msp20I TGGCCA 1 cut(s) 1165
MspI CCGG 3 cut(s) 325, 893, 939
MspR9I CCNGG 9 cut(s) 573, 872, 893, 894, 939, 940, 1074, 1134, 1167
MvaI CCWGG 5 cut(s) 573, 872, 1074, 1134, 1167
MvnI CGCG 1 cut(s) 279
MwoI GCNNNNNNNGC 9 cut(s) 156, 368, 416, 560, 717, 872, 1118, 1145, 1193
NciI CCSGG 4 cut(s) 893, 894, 939, 940
NcoI CCATGG 1 cut(s) 992
NdeII GATC 2 cut(s) 380, 685
NlaIII CATG 7 cut(s) 10, 87, 782, 996, 1129, 1178, 1239
NlaIV GGNNCC 2 cut(s) 1087, 1131
NmuCI GTSAC 1 cut(s) 1098
NruI TCGCGA 1 cut(s) 279
NspV TTCGAA 1 cut(s) 108
PaeR7I CTCGAG 1 cut(s) 615
PceI AGGCCT 1 cut(s) 1001
PcsI WCGNNNNNNNCGW 2 cut(s) 813, 1011
PdmI GAANNNNTTC 1 cut(s) 520
PfeI GAWTC 3 cut(s) 166, 542, 931
PflFI GACNNNGTC 2 cut(s) 7, 400
PflMI CCANNNNNTGG 1 cut(s) 1059
PkrI GCNGC 7 cut(s) 97, 133, 421, 785, 811, 814, 1242
PsiI TTATAA 1 cut(s) 465
Psp6I CCWGG 5 cut(s) 571, 870, 1072, 1132, 1165
PspFI CCCAGC 1 cut(s) 1059
PspGI CCWGG 5 cut(s) 571, 870, 1072, 1132, 1165
PspN4I GGNNCC 2 cut(s) 1087, 1131
PspPI GGNCC 4 cut(s) 644, 885, 1130, 1147
PstNI CAGNNNCTG 2 cut(s) 647, 1059
PsyI GACNNNGTC 2 cut(s) 7, 400
RruI TCGCGA 1 cut(s) 279
RsaI GTAC 3 cut(s) 259, 674, 1205
RsaNI GTAC 3 cut(s) 258, 673, 1204
SalI GTCGAC 1 cut(s) 176
SaqAI TTAA 2 cut(s) 477, 960
SatI GCNGC 7 cut(s) 96, 132, 420, 784, 810, 813, 1241
Sau3AI GATC 2 cut(s) 380, 685
Sau96I GGNCC 4 cut(s) 644, 885, 1130, 1147
ScrFI CCNGG 9 cut(s) 573, 872, 893, 894, 939, 940, 1074, 1134, 1167
SfaNI GCATC 2 cut(s) 558, 1011
SfcI CTRYAG 4 cut(s) 760, 925, 970, 1209
Sfr274I CTCGAG 1 cut(s) 615
SfuI TTCGAA 1 cut(s) 108
SinI GGWCC 1 cut(s) 885
SlaI CTCGAG 1 cut(s) 615
SmaI CCCGGG 2 cut(s) 894, 940
SmlI CTYRAG 3 cut(s) 44, 615, 1094
SmoI CTYRAG 3 cut(s) 44, 615, 1094
Sse9I AATT 2 cut(s) 273, 755
SseBI AGGCCT 1 cut(s) 1001
SsiI CCGC 9 cut(s) 96, 132, 455, 751, 810, 813, 844, 879, 1112
SspMI CTAG 3 cut(s) 156, 546, 1008
StuI AGGCCT 1 cut(s) 1001
StyD4I CCNGG 9 cut(s) 571, 870, 891, 892, 937, 938, 1072, 1132, 1165
StyI CCWWGG 1 cut(s) 992
TaaI ACNGT 7 cut(s) 242, 349, 400, 592, 926, 974, 1210
TaiI ACGT 3 cut(s) 119, 503, 1044
TaqI TCGA 8 cut(s) 108, 177, 524, 566, 616, 789, 1065, 1247
TasI AATT 2 cut(s) 273, 755
TatI WGTACW 2 cut(s) 672, 1203
TauI GCSGC 4 cut(s) 98, 134, 812, 815
TfiI GAWTC 3 cut(s) 166, 542, 931
Tru1I TTAA 2 cut(s) 477, 960
Tru9I TTAA 2 cut(s) 477, 960
TscAI CASTG 3 cut(s) 369, 1166, 1213
TseFI GTSAC 1 cut(s) 1098
TseI GCWGC 3 cut(s) 419, 783, 1240
Tsp45I GTSAC 1 cut(s) 1098
TspDTI ATGAA 5 cut(s) 598, 767, 784, 1163, 1224
TspGWI ACGGA 1 cut(s) 904
TspMI CCCGGG 2 cut(s) 892, 938
TspRI CASTG 3 cut(s) 369, 1166, 1213
Tth111I GACNNNGTC 2 cut(s) 7, 400
Van91I CCANNNNNTGG 1 cut(s) 1059
VpaK11BI GGWCC 1 cut(s) 885
XhoI CTCGAG 1 cut(s) 615
XmaI CCCGGG 2 cut(s) 892, 938
XmiI GTMKAC 1 cut(s) 177
XmnI GAANNNNTTC 1 cut(s) 520
XspI CTAG 3 cut(s) 156, 546, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.