Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0009155

Physical Location & Seq

Genomic Coordinates Reverse (-)

9090591 .. 9095071

Gene Structure 4481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG104500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGACCATGTCCTTGAAGCGCCTAGACCAATCCCTGATAGCTCTCAAGAAGTCTCCCTTGAAAAAAAAGCAAGACATTCAGGCATGGCTAAGTGCCGCCTTGACTTTCCAAGAAACGTGCAAGGACTACGCCGCCGACCACGGCCTCAGCCTCACTAGCTCCGAGAATCTCAGGGTCGACCTTTCCAAGCGCATAGATTATGCCTCTCAGTTGGGAAGTAATCTATTAGCTCTCGTCAACCGTGTTACAAGTATCGGTACGCCGAAGAACACAATTCACGATAAACAAGCGGAGGTTTTTCCCAAATGGGTTTCGCCGAAGAACCGGAAACTACTTCAGGCAACCACAGTCAAAGCGAACGCAGTGGTTGCACAAGATGGATCAGGGAACTATAAGACTGTGTCGGAGGCTATTCAGGCAGCTTCAGGGGGTCGGTTTGTGATTTATGTGAAGGCAGGAGTTTATAAGGAGAAGATTAAGACTAATAAAGATGGTATTACGTTGATTGGAGATGGAAAATATTCGACTATTATTACTGGGGATTCTAGCGTCGCTAAAGGTGCTTCGATGCCTGGCTCAGCTACATTCACCGTAACAGGAGATGGGTTCATAGCTCGAGATATTGGTTTCCAAAACACAGCAGGCCCTGATGCAGAACAAGCCTTAGCTCTGTACATCTCTTCTGATCACTCAGTTCTCTACAGGTGTAGCATTGTTGGCTACCAAGACACACTCTACGCACTCGCCCTCCGCCAATTCTACAGAGAATGTGACATTCTTGGCAGCCTTGACTTCATCTTCGGAAACGCCGCCGCCGTCTTCCAGGGTTGCAATCTCATCTTCCGCAGGCACAAGGGCTATGGTGCTATCCTGGCAAGCGGGAGATCCGACCCGGGTCAAAAGACGGGCTTCTCCGTCCAGAACTGTAGGATTCTGGCCGGGTCAGACTTATCTCCTGTTAAACATTCCTACAGTTCGTATCTTGGGAGGCCATGGAAGGCCTACGCTAGAGCCGTGGTGATGCAGTCCAACATAGACGACGTTATCGCTCCCAGAGGCTGGGTCGAGTGGCCTGGGGCTGGAGGTTCCAGCCTCAAGTCACTCTACTTTGCGGAGTTCGCAAACATGGGGCCTGGGGCTGGAGTGGCCCAGAGGGTGCAGTGGCCAGGGTTTCATGTTATTGGAGCTGATATTGCTGTTGAGTACACTGTAGGTAACTTTATTGGTGGAACTTCATGGCTGCCTTCGACTGGTGTGGCTTTTGTTTCTGGCCTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

426

Amino Acids

45.78

Weight (kDa)

9.32

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	3 - 78	3e-09	Plant invertase/pectin methylesterase inhibitor
Pectinesterase	PF01095	120 - 410	5e-115	Pectinesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009155)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20860 AT5G20860
fragaria_vesca	FvH4_1g09560
malus_domestica	MD02G1104200.v1.1
prunus_persica	Prupe.7G190700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0096331 RchiOBHm_Chr2g0096371
rosa_laevigata	RLG00000016634 RLG00000016637
rosa_multiflora	Rmu_sc0004244.1_g000006 Rmu_sc0005996.1_g000024 Rmu_sc0005996.1_g000034
rosa_roxburghii	Rroxscaffold_2G00145670
rosa_rugosa	Rorug02G0057600 Rorug02G0057700 Rorug02G0057700
rosa_samantha	Rh2AG104500 Rh2BG106600 Rh2CG108500 Rh2DG107400
rosa_wichuraiana	Rw2G008050 Rw2G008060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	465
AccB7I	CCANNNNNTGG	1 cut(s)	1059
AccI	GTMKAC	1 cut(s)	177
AciI	CCGC	9 cut(s)	96, 132, 290, 751, 810, 813, 844, 879, 1112
AclWI	GGATC	2 cut(s)	388, 879
AcoI	YGGCCR	2 cut(s)	936, 1163
AcuI	CTGAAG	2 cut(s)	320, 408
AfaI	GTAC	3 cut(s)	259, 674, 1205
AfiI	CCNNNNNNNGG	4 cut(s)	1059, 1079, 1139, 1250
AgsI	TTSAA	2 cut(s)	16, 61
AjnI	CCWGG	6 cut(s)	571, 822, 870, 1072, 1132, 1165
AluBI	AGCT	8 cut(s)	41, 159, 230, 422, 581, 614, 668, 1187
AluI	AGCT	8 cut(s)	41, 159, 230, 422, 581, 614, 668, 1187
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	2 cut(s)	388, 879
AlwNI	CAGNNNCTG	2 cut(s)	647, 1059
Ama87I	CYCGRG	2 cut(s)	615, 892
ApeKI	GCWGC	3 cut(s)	419, 783, 1240
ArsI	GACNNNNNNTTYG	2 cut(s)	782, 814
Asp700I	GAANNNNTTC	1 cut(s)	520
AspLEI	GCGC	2 cut(s)	21, 192
AspS9I	GGNCC	3 cut(s)	644, 1130, 1147
AsuC2I	CCSGG	3 cut(s)	893, 894, 940
AsuHPI	GGTGA	2 cut(s)	580, 1030
AvaI	CYCGRG	2 cut(s)	615, 892
BalI	TGGCCA	1 cut(s)	1165
BbsI	GAAGAC	1 cut(s)	811
BbvCI	CCTCAGC	1 cut(s)	146
BbvI	GCAGC	3 cut(s)	431, 795, 1227
BccI	CCATC	4 cut(s)	371, 485, 506, 596
BceAI	ACGGC	3 cut(s)	157, 800, 998
BciT130I	CCWGG	6 cut(s)	573, 824, 872, 1074, 1134, 1167
BclI	TGATCA	1 cut(s)	685
BcnI	CCSGG	3 cut(s)	893, 894, 940
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	4 cut(s)	23, 156, 546, 1008
BfmI	CTRYAG	5 cut(s)	700, 760, 925, 970, 1209
BfoI	RGCGCY	1 cut(s)	22
BisI	GCNGC	7 cut(s)	96, 132, 420, 784, 810, 813, 1241
BlpI	GCTNAGC	1 cut(s)	577
BlsI	GCNGC	7 cut(s)	97, 133, 421, 785, 811, 814, 1242
Bme1390I	CCNGG	9 cut(s)	573, 824, 872, 893, 894, 940, 1074, 1134, 1167
BmeT110I	CYCGRG	2 cut(s)	615, 892
BmgT120I	GGNCC	3 cut(s)	644, 1130, 1147
BmiI	GGNNCC	2 cut(s)	1087, 1131
BmrFI	CCNGG	9 cut(s)	573, 824, 872, 893, 894, 940, 1074, 1134, 1167
BmrI	ACTGGG	1 cut(s)	546
BmsI	GCATC	3 cut(s)	558, 640, 1011
BmuI	ACTGGG	1 cut(s)	546
BoxI	GACNNNNGTC	1 cut(s)	894
BpiI	GAAGAC	1 cut(s)	811
BpmI	CTGGAG	2 cut(s)	1101, 1161
Bpu10I	CCTNAGC	2 cut(s)	146, 664
Bpu1102I	GCTNAGC	1 cut(s)	577
BpuEI	CTTGAG	2 cut(s)	29, 1079
BpuMI	CCSGG	3 cut(s)	893, 894, 940
BsaJI	CCNNGG	8 cut(s)	139, 823, 892, 992, 1014, 1073, 1133, 1166
BsaWI	WCCGGW	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	4 cut(s)	1059, 1079, 1139, 1250
Bse1I	ACTGG	2 cut(s)	541, 1255
BseBI	CCWGG	6 cut(s)	573, 824, 872, 1074, 1134, 1167
BseDI	CCNNGG	8 cut(s)	139, 823, 892, 992, 1014, 1073, 1133, 1166
BseLI	CCNNNNNNNGG	4 cut(s)	1059, 1079, 1139, 1250
BseMII	CTCAG	5 cut(s)	160, 184, 221, 591, 705
BseNI	ACTGG	2 cut(s)	541, 1255
BseXI	GCAGC	3 cut(s)	431, 795, 1227
BseYI	CCCAGC	1 cut(s)	1059
BsgI	GTGCAG	1 cut(s)	1178
BsiHKCI	CYCGRG	2 cut(s)	615, 892
BsiSI	CCGG	3 cut(s)	325, 893, 939
BslI	CCNNNNNNNGG	4 cut(s)	1059, 1079, 1139, 1250
BsmAI	GTCTC	1 cut(s)	57
BsoBI	CYCGRG	2 cut(s)	615, 892
Bsp1407I	TGTACA	1 cut(s)	672
Bsp143I	GATC	3 cut(s)	380, 685, 884
Bsp1720I	GCTNAGC	1 cut(s)	577
Bsp19I	CCATGG	1 cut(s)	992
BspACI	CCGC	9 cut(s)	96, 132, 290, 751, 810, 813, 844, 879, 1112
BspCNI	CTCAG	5 cut(s)	159, 183, 220, 590, 704
BspLI	GGNNCC	2 cut(s)	1087, 1131
BspPI	GGATC	2 cut(s)	388, 879
BsrGI	TGTACA	1 cut(s)	672
BsrI	ACTGG	2 cut(s)	541, 1255
BssECI	CCNNGG	8 cut(s)	139, 823, 892, 992, 1014, 1073, 1133, 1166
BssMI	GATC	3 cut(s)	380, 685, 884
BssT1I	CCWWGG	1 cut(s)	992
Bst2UI	CCWGG	6 cut(s)	573, 824, 872, 1074, 1134, 1167
Bst4CI	ACNGT	7 cut(s)	242, 349, 400, 592, 926, 974, 1210
Bst6I	CTCTTC	1 cut(s)	685
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstAUI	TGTACA	1 cut(s)	672
BstC8I	GCNNGC	3 cut(s)	643, 848, 877
BstDEI	CTNAG	7 cut(s)	89, 146, 170, 207, 577, 664, 691
BstDSI	CCRYGG	3 cut(s)	139, 992, 1014
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	2 cut(s)	21, 192
BstKTI	GATC	3 cut(s)	383, 688, 887
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	3 cut(s)	380, 685, 884
BstNI	CCWGG	6 cut(s)	573, 824, 872, 1074, 1134, 1167
BstPAI	GACNNNNGTC	1 cut(s)	894
BstSCI	CCNGG	9 cut(s)	571, 822, 870, 891, 892, 938, 1072, 1132, 1165
BstSFI	CTRYAG	5 cut(s)	700, 760, 925, 970, 1209
BstV1I	GCAGC	3 cut(s)	431, 795, 1227
BstV2I	GAAGAC	1 cut(s)	811
BstX2I	RGATCY	1 cut(s)	884
BstYI	RGATCY	1 cut(s)	884
BtgI	CCRYGG	3 cut(s)	139, 992, 1014
BtsI	GCAGTG	2 cut(s)	369, 1166
BtsIMutI	CAGTG	3 cut(s)	369, 1166, 1206
Cac8I	GCNNGC	3 cut(s)	643, 848, 877
CaiI	CAGNNNCTG	2 cut(s)	647, 1059
CfoI	GCGC	2 cut(s)	21, 192
Cfr13I	GGNCC	3 cut(s)	644, 1130, 1147
Cfr9I	CCCGGG	1 cut(s)	892
CseI	GACGC	1 cut(s)	538
Csp6I	GTAC	3 cut(s)	258, 673, 1204
CviAII	CATG	6 cut(s)	7, 84, 993, 1126, 1175, 1236
CviQI	GTAC	3 cut(s)	258, 673, 1204
DdeI	CTNAG	7 cut(s)	89, 146, 170, 207, 577, 664, 691
DpnI	GATC	3 cut(s)	382, 687, 886
DpnII	GATC	3 cut(s)	380, 685, 884
EaeI	YGGCCR	2 cut(s)	936, 1163
Eam1104I	CTCTTC	1 cut(s)	685
EarI	CTCTTC	1 cut(s)	685
EciI	GGCGGA	1 cut(s)	740
Eco130I	CCWWGG	1 cut(s)	992
Eco147I	AGGCCT	1 cut(s)	1001
Eco57I	CTGAAG	2 cut(s)	320, 408
Eco88I	CYCGRG	2 cut(s)	615, 892
EcoO109I	RGGNCCY	2 cut(s)	644, 1130
EcoRII	CCWGG	6 cut(s)	571, 822, 870, 1072, 1132, 1165
EcoT14I	CCWWGG	1 cut(s)	992
ErhI	CCWWGG	1 cut(s)	992
FaeI	CATG	6 cut(s)	10, 87, 996, 1129, 1178, 1239
FalI	AAGNNNNNCTT	4 cut(s)	41, 73, 893, 925
FatI	CATG	6 cut(s)	6, 83, 992, 1125, 1174, 1235
FauI	CCCGC	1 cut(s)	872
FbaI	TGATCA	1 cut(s)	685
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	7 cut(s)	96, 132, 420, 784, 810, 813, 1241
Fsp4HI	GCNGC	7 cut(s)	96, 132, 420, 784, 810, 813, 1241
FspBI	CTAG	4 cut(s)	23, 156, 546, 1008
GlaI	GCGC	2 cut(s)	20, 191
GluI	GCNGC	7 cut(s)	96, 132, 420, 784, 810, 813, 1241
GsaI	CCCAGC	1 cut(s)	1063
GsuI	CTGGAG	2 cut(s)	1101, 1161
HaeII	RGCGCY	1 cut(s)	22
HapII	CCGG	3 cut(s)	325, 893, 939
HgaI	GACGC	1 cut(s)	538
HhaI	GCGC	2 cut(s)	21, 192
Hin1II	CATG	6 cut(s)	10, 87, 996, 1129, 1178, 1239
Hin6I	GCGC	2 cut(s)	19, 190
HinP1I	GCGC	2 cut(s)	19, 190
HincII	GTYRAC	2 cut(s)	178, 238
HindII	GTYRAC	2 cut(s)	178, 238
HinfI	GANTC	3 cut(s)	166, 542, 931
HpaII	CCGG	3 cut(s)	325, 893, 939
HphI	GGTGA	2 cut(s)	580, 1030
Hpy166II	GTNNAC	3 cut(s)	178, 238, 1206
Hpy188I	TCNGA	6 cut(s)	163, 406, 685, 803, 889, 946
Hpy188III	TCNNGA	4 cut(s)	46, 278, 617, 919
Hpy8I	GTNNAC	3 cut(s)	178, 238, 1206
Hpy99I	CGWCG	2 cut(s)	554, 1043
HpyAV	CCTTC	3 cut(s)	445, 991, 1254
HpyCH4III	ACNGT	7 cut(s)	242, 349, 400, 592, 926, 974, 1210
HpyCH4IV	ACGT	3 cut(s)	116, 500, 1041
HpyCH4V	TGCA	6 cut(s)	120, 371, 653, 831, 1024, 1159
HpyF3I	CTNAG	7 cut(s)	89, 146, 170, 207, 577, 664, 691
HpySE526I	ACGT	3 cut(s)	116, 500, 1041
Hsp92II	CATG	6 cut(s)	10, 87, 996, 1129, 1178, 1239
HspAI	GCGC	2 cut(s)	19, 190
Ksp22I	TGATCA	1 cut(s)	685
Kzo9I	GATC	3 cut(s)	380, 685, 884
LmnI	GCTCC	3 cut(s)	164, 1054, 1184
Lsp1109I	GCAGC	3 cut(s)	431, 795, 1227
LweI	GCATC	3 cut(s)	558, 640, 1011
MaeI	CTAG	4 cut(s)	23, 156, 546, 1008
MaeII	ACGT	3 cut(s)	116, 500, 1041
MaeIII	GTNAC	5 cut(s)	244, 592, 770, 1098, 1214
MalI	GATC	3 cut(s)	382, 687, 886
MboI	GATC	3 cut(s)	380, 685, 884
MboII	GAAGA	7 cut(s)	277, 331, 484, 672, 790, 811, 832
MflI	RGATCY	1 cut(s)	884
MlsI	TGGCCA	1 cut(s)	1165
MluCI	AATT	2 cut(s)	273, 755
MluNI	TGGCCA	1 cut(s)	1165
MmeI	TCCRAC	3 cut(s)	384, 912, 1053
Mox20I	TGGCCA	1 cut(s)	1165
MroXI	GAANNNNTTC	1 cut(s)	520
MscI	TGGCCA	1 cut(s)	1165
MseI	TTAA	2 cut(s)	477, 960
Msp20I	TGGCCA	1 cut(s)	1165
MspI	CCGG	3 cut(s)	325, 893, 939
MspR9I	CCNGG	9 cut(s)	573, 824, 872, 893, 894, 940, 1074, 1134, 1167
MvaI	CCWGG	6 cut(s)	573, 824, 872, 1074, 1134, 1167
NciI	CCSGG	3 cut(s)	893, 894, 940
NcoI	CCATGG	1 cut(s)	992
NdeII	GATC	3 cut(s)	380, 685, 884
NlaIII	CATG	6 cut(s)	10, 87, 996, 1129, 1178, 1239
NlaIV	GGNNCC	2 cut(s)	1087, 1131
NmuCI	GTSAC	2 cut(s)	770, 1098
PaeR7I	CTCGAG	1 cut(s)	615
PceI	AGGCCT	1 cut(s)	1001
PcsI	WCGNNNNNNNCGW	2 cut(s)	813, 1011
PdmI	GAANNNNTTC	1 cut(s)	520
PfeI	GAWTC	3 cut(s)	166, 542, 931
PflFI	GACNNNGTC	2 cut(s)	7, 400
PflMI	CCANNNNNTGG	1 cut(s)	1059
PkrI	GCNGC	7 cut(s)	97, 133, 421, 785, 811, 814, 1242
PshAI	GACNNNNGTC	1 cut(s)	894
PsiI	TTATAA	1 cut(s)	465
Psp6I	CCWGG	6 cut(s)	571, 822, 870, 1072, 1132, 1165
PspFI	CCCAGC	1 cut(s)	1059
PspGI	CCWGG	6 cut(s)	571, 822, 870, 1072, 1132, 1165
PspN4I	GGNNCC	2 cut(s)	1087, 1131
PspPI	GGNCC	3 cut(s)	644, 1130, 1147
PstNI	CAGNNNCTG	2 cut(s)	647, 1059
PsuI	RGATCY	1 cut(s)	884
PsyI	GACNNNGTC	2 cut(s)	7, 400
RsaI	GTAC	3 cut(s)	259, 674, 1205
RsaNI	GTAC	3 cut(s)	258, 673, 1204
SalI	GTCGAC	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	477, 960
SatI	GCNGC	7 cut(s)	96, 132, 420, 784, 810, 813, 1241
Sau3AI	GATC	3 cut(s)	380, 685, 884
Sau96I	GGNCC	3 cut(s)	644, 1130, 1147
ScrFI	CCNGG	9 cut(s)	573, 824, 872, 893, 894, 940, 1074, 1134, 1167
SfaNI	GCATC	3 cut(s)	558, 640, 1011
SfcI	CTRYAG	5 cut(s)	700, 760, 925, 970, 1209
Sfr274I	CTCGAG	1 cut(s)	615
SlaI	CTCGAG	1 cut(s)	615
SmaI	CCCGGG	1 cut(s)	894
SmlI	CTYRAG	3 cut(s)	44, 615, 1094
SmoI	CTYRAG	3 cut(s)	44, 615, 1094
Sse9I	AATT	2 cut(s)	273, 755
SseBI	AGGCCT	1 cut(s)	1001
SsiI	CCGC	9 cut(s)	96, 132, 290, 751, 810, 813, 844, 879, 1112
SspI	AATATT	1 cut(s)	521
SspMI	CTAG	4 cut(s)	23, 156, 546, 1008
StuI	AGGCCT	1 cut(s)	1001
StyD4I	CCNGG	9 cut(s)	571, 822, 870, 891, 892, 938, 1072, 1132, 1165
StyI	CCWWGG	1 cut(s)	992
TaaI	ACNGT	7 cut(s)	242, 349, 400, 592, 926, 974, 1210
TaiI	ACGT	3 cut(s)	119, 503, 1044
TaqI	TCGA	6 cut(s)	177, 524, 566, 616, 1065, 1247
TasI	AATT	2 cut(s)	273, 755
TatI	WGTACW	2 cut(s)	672, 1203
TauI	GCSGC	4 cut(s)	98, 134, 812, 815
TfiI	GAWTC	3 cut(s)	166, 542, 931
Tru1I	TTAA	2 cut(s)	477, 960
Tru9I	TTAA	2 cut(s)	477, 960
TscAI	CASTG	3 cut(s)	369, 1166, 1213
TseFI	GTSAC	2 cut(s)	770, 1098
TseI	GCWGC	3 cut(s)	419, 783, 1240
Tsp45I	GTSAC	2 cut(s)	770, 1098
TspDTI	ATGAA	4 cut(s)	598, 784, 1163, 1224
TspGWI	ACGGA	1 cut(s)	904
TspMI	CCCGGG	1 cut(s)	892
TspRI	CASTG	3 cut(s)	369, 1166, 1213
Tth111I	GACNNNGTC	2 cut(s)	7, 400
Van91I	CCANNNNNTGG	1 cut(s)	1059
XhoI	CTCGAG	1 cut(s)	615
XmaI	CCCGGG	1 cut(s)	892
XmiI	GTMKAC	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	520
XspI	CTAG	4 cut(s)	23, 156, 546, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.