RLG00000016637

Pectinesterase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
8442467 .. 8445577
3111 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016637

Sequence Viewer

Length: 1608 bp
ATGTTTCAGTTTGTGGTTTTAGGGTTTCTTTGGGTACTGGGAGCGGCCTCAGTTTCTGGGGCTGCCTTGGAGAAGTACCAAGTGCATGTTAAAAAAGAATGCAGCTTTACTAGATATCCCAGCATTTGTGTTCAAACCTTGATGGGGTTGGGTGGTTCTGGGCACCAGGATCCTCAACAGGTTGATATAATGTTGGCTCTTGTTAACAAGACCATTTATGAGACCCGGTTGGCCACCTCCGAGTTTTCCCAATTCAGCTCCCAAGTATCTGAAGTCCGTGAAGCTCAACCCGCTCACCATTCTGTCAAAGACTACTGTGAAGAGTTAATGACCATGTCCTTGAAGCGCTTAGACCAATCCCTGATAGCTCTCAGGAAGTCTCCCTTGAAAAAAAAACAAGACATTCAGGCATGGCTAAGTGCCGCCTTGACTTTCCAAGAAACCTGCAAGGACTACGCCGCCGACCACGGCCTCAGCCTCACTAGCTCCGAGAATCTCAGGGTCGACCTTTCCAAGCGCATAGATTATGCCTCTCAGTTGGGAAGTAATCTATTAGCTCTCGTCAACCGTGTTACAAGTATCGGTACGCCGAAGAACACAATTCGTGATAAACAAGCAGAGGTTTTTCCTAAATGGGTTTCGCCGAAGAACCGGAAACTACTTCAGGCAACCACAGTCCAAGCTAACGCAGTGGTTGCACAAGATGGATCAGGGAACTATAAGACTGTGTCGGAGGCTATTCAGGCGGCTTCAGGGGGTCGGTTTGTGATTTATGTGAAGGCGGGAGTTTATAAGGAAAAGATTAAGACTAACAAAGATGGTATTACGTTGATAGGAGATGGAAAGTATTCGACTATTATTACTGGGGATTCTAGCGTCGCTAAAGGTGCTTCGATGCCTGGCTCAGCTACATTCACCGTAACAGGAGATGGGTTCATAGCTCGAGATATTGGTTTCCAAAACACAGCAGGCCCTGATGGAGAACAAGCCTTAGCTCTGTACATCTCTTCTGACCACTCAGTTCTCTACAGGTGTAGCATTGTTGGCTACCAAGACACACTCTACGCACTCGCCCTCCGCCAATTCTACAGAGAATGTGACATTCATGGCAGCCTCGACTTCATCTTCGGAAACGCCGCCGCCGTCTTCCAGAGTTGCAATATCATCTTCCGCAGGCACAAGGGCTATGGTGCTATCCTGGCAAGCGGGAGGTCCGACCCGGGGCAAAAGACGGGCTTCTCCGTCCAGAACTGTAGGATTCTGCCCGGGTCAGACTTCTCTCCTGTTAAACATTCCTACAGTTCGTATCTTGGGAGGGCATGGAAGGACTACGCTAGAGCCGTGGTGATGCAGTCCAACATAGACGACGTTATCGCTCCCAGAGGCTGGGTCGAGTGGCCTGACGCTGGAGGTTCCAGGCTCAAGTCACTCTACTTTGCCGAGTTCGCAAACATGGGGCCTGGGGCTGGAGTGGCCCAGAGGGTGCAGTGGCCAGGGTTTCATGTTATTGGAGCTGATACTGCTGTTGAGTACACTGTAGGTAACTTTATTGGTGGAACTTCATGGCTGCCTTCGACTGGTGTGGCTTTTGTTTCTGGCCTCCATTGA

Protein Analysis

536

Amino Acids

58.17

Weight (kDa)

8.88

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 30 - 187 4.2e-22 Plant invertase/pectin methylesterase inhibitor
Pectinesterase PF01095 229 - 519 1.3e-113 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 792
Acc36I ACCTGC 1 cut(s) 452
AccB1I GGYRCC 1 cut(s) 162
AccB7I CCANNNNNTGG 1 cut(s) 1386
AccBSI CCGCTC 2 cut(s) 44, 293
AccI GTMKAC 1 cut(s) 504
AclWI GGATC 3 cut(s) 164, 177, 715
AcoI YGGCCR 2 cut(s) 231, 1490
AcuI CTGAAG 3 cut(s) 291, 647, 735
AfaI GTAC 5 cut(s) 36, 77, 586, 1001, 1532
AfeI AGCGCT 1 cut(s) 347
AfiI CCNNNNNNNGG 6 cut(s) 144, 1221, 1386, 1406, 1466, 1577
AgsI TTSAA 3 cut(s) 134, 343, 388
AjnI CCWGG 6 cut(s) 165, 898, 1197, 1415, 1459, 1492
Alw26I GTCTC 2 cut(s) 215, 384
AlwI GGATC 3 cut(s) 164, 177, 715
AlwNI CAGNNNCTG 3 cut(s) 56, 974, 1386
Ama87I CYCGRG 3 cut(s) 942, 1219, 1265
Aor51HI AGCGCT 1 cut(s) 347
AoxI GGCC 9 cut(s) 45, 231, 469, 970, 1397, 1457, 1473, 1490, 1597
ApeKI GCWGC 4 cut(s) 62, 102, 1110, 1567
ArsI GACNNNNNNTTYG 2 cut(s) 1109, 1141
Asp700I GAANNNNTTC 1 cut(s) 847
AspLEI GCGC 2 cut(s) 348, 519
AspS9I GGNCC 4 cut(s) 971, 1212, 1457, 1474
AsuC2I CCSGG 5 cut(s) 226, 1220, 1221, 1266, 1267
AsuHPI GGTGA 3 cut(s) 287, 907, 1357
AvaI CYCGRG 3 cut(s) 942, 1219, 1265
AvaII GGWCC 1 cut(s) 1212
BaeGI GKGCMC 1 cut(s) 165
BaeI ACNNNNGTAYC 2 cut(s) 1509, 1542
BalI TGGCCA 2 cut(s) 233, 1492
BamHI GGATCC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 1138
BbvCI CCTCAGC 1 cut(s) 473
BbvI GCAGC 4 cut(s) 49, 114, 1122, 1554
BccI CCATC 6 cut(s) 136, 698, 812, 833, 923, 971
BceAI ACGGC 3 cut(s) 484, 1127, 1325
BciT130I CCWGG 6 cut(s) 167, 900, 1199, 1417, 1461, 1494
BcnI CCSGG 5 cut(s) 226, 1220, 1221, 1266, 1267
BcoDI GTCTC 2 cut(s) 215, 384
BfaI CTAG 4 cut(s) 111, 483, 873, 1335
BfmI CTRYAG 5 cut(s) 1027, 1087, 1252, 1297, 1536
BfoI RGCGCY 1 cut(s) 349
BfuAI ACCTGC 1 cut(s) 452
BlpI GCTNAGC 1 cut(s) 904
Bme18I GGWCC 1 cut(s) 1212
BmeT110I CYCGRG 3 cut(s) 942, 1219, 1265
BmgT120I GGNCC 4 cut(s) 971, 1212, 1457, 1474
BmiI GGNNCC 4 cut(s) 164, 171, 1414, 1458
BmrI ACTGGG 2 cut(s) 47, 873
BmsI GCATC 2 cut(s) 885, 1338
BmuI ACTGGG 2 cut(s) 47, 873
BpiI GAAGAC 1 cut(s) 1138
BpmI CTGGAG 2 cut(s) 1428, 1488
Bpu10I CCTNAGC 2 cut(s) 473, 991
Bpu1102I GCTNAGC 1 cut(s) 904
BpuEI CTTGAG 1 cut(s) 1406
BpuMI CCSGG 5 cut(s) 226, 1220, 1221, 1266, 1267
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 8 cut(s) 66, 466, 1219, 1220, 1265, 1341, 1460, 1493
BsaWI WCCGGW 1 cut(s) 651
BsaXI ACNNNNNCTCC 2 cut(s) 1059, 1089
Bsc4I CCNNNNNNNGG 6 cut(s) 144, 1221, 1386, 1406, 1466, 1577
Bse1I ACTGG 3 cut(s) 42, 868, 1582
BseBI CCWGG 6 cut(s) 167, 900, 1199, 1417, 1461, 1494
BseDI CCNNGG 8 cut(s) 66, 466, 1219, 1220, 1265, 1341, 1460, 1493
BseLI CCNNNNNNNGG 6 cut(s) 144, 1221, 1386, 1406, 1466, 1577
BseMII CTCAG 7 cut(s) 63, 385, 487, 511, 548, 918, 1032
BseNI ACTGG 3 cut(s) 42, 868, 1582
BseSI GKGCMC 1 cut(s) 165
BseXI GCAGC 4 cut(s) 49, 114, 1122, 1554
BseYI CCCAGC 2 cut(s) 119, 1386
BsgI GTGCAG 1 cut(s) 1505
BshFI GGCC 9 cut(s) 47, 233, 471, 972, 1399, 1459, 1475, 1492, 1599
BshNI GGYRCC 1 cut(s) 162
BsiHKCI CYCGRG 3 cut(s) 942, 1219, 1265
BsiSI CCGG 4 cut(s) 226, 652, 1220, 1266
BslI CCNNNNNNNGG 6 cut(s) 144, 1221, 1386, 1406, 1466, 1577
BsmAI GTCTC 2 cut(s) 215, 384
BsmI GAATGC 1 cut(s) 104
BsnI GGCC 9 cut(s) 47, 233, 471, 972, 1399, 1459, 1475, 1492, 1599
Bso31I GGTCTC 1 cut(s) 215
BsoBI CYCGRG 3 cut(s) 942, 1219, 1265
Bsp1286I GDGCHC 1 cut(s) 165
Bsp1407I TGTACA 1 cut(s) 999
Bsp143I GATC 2 cut(s) 169, 707
Bsp1720I GCTNAGC 1 cut(s) 904
BspANI GGCC 9 cut(s) 47, 233, 471, 972, 1399, 1459, 1475, 1492, 1599
BspCNI CTCAG 7 cut(s) 62, 384, 486, 510, 547, 917, 1031
BspLI GGNNCC 4 cut(s) 164, 171, 1414, 1458
BspMI ACCTGC 1 cut(s) 452
BspPI GGATC 3 cut(s) 164, 177, 715
BspT107I GGYRCC 1 cut(s) 162
BspTNI GGTCTC 1 cut(s) 215
BsrBI CCGCTC 2 cut(s) 44, 293
BsrGI TGTACA 1 cut(s) 999
BsrI ACTGG 3 cut(s) 42, 868, 1582
BssECI CCNNGG 8 cut(s) 66, 466, 1219, 1220, 1265, 1341, 1460, 1493
BssMI GATC 2 cut(s) 169, 707
BssT1I CCWWGG 1 cut(s) 66
Bst2UI CCWGG 6 cut(s) 167, 900, 1199, 1417, 1461, 1494
Bst4CI ACNGT 8 cut(s) 317, 569, 676, 727, 919, 1253, 1301, 1537
Bst6I CTCTTC 2 cut(s) 315, 1012
BstAPI GCANNNNNTGC 1 cut(s) 695
BstAUI TGTACA 1 cut(s) 999
BstC8I GCNNGC 3 cut(s) 970, 1175, 1204
BstDSI CCRYGG 2 cut(s) 466, 1341
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 2 cut(s) 348, 519
BstKTI GATC 2 cut(s) 172, 710
BstMAI GTCTC 2 cut(s) 215, 384
BstMBI GATC 2 cut(s) 169, 707
BstNI CCWGG 6 cut(s) 167, 900, 1199, 1417, 1461, 1494
BstNSI RCATGY 1 cut(s) 89
BstSFI CTRYAG 5 cut(s) 1027, 1087, 1252, 1297, 1536
BstSLI GKGCMC 1 cut(s) 165
BstV1I GCAGC 4 cut(s) 49, 114, 1122, 1554
BstV2I GAAGAC 1 cut(s) 1138
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BsuRI GGCC 9 cut(s) 47, 233, 471, 972, 1399, 1459, 1475, 1492, 1599
BtgI CCRYGG 2 cut(s) 466, 1341
BtsI GCAGTG 2 cut(s) 696, 1493
BtsIMutI CAGTG 3 cut(s) 696, 1493, 1533
BveI ACCTGC 1 cut(s) 452
Cac8I GCNNGC 3 cut(s) 970, 1175, 1204
CaiI CAGNNNCTG 3 cut(s) 56, 974, 1386
CfoI GCGC 2 cut(s) 348, 519
Cfr13I GGNCC 4 cut(s) 971, 1212, 1457, 1474
Cfr9I CCCGGG 2 cut(s) 1219, 1265
CseI GACGC 2 cut(s) 865, 1412
Csp6I GTAC 5 cut(s) 35, 76, 585, 1000, 1531
CviAII CATG 8 cut(s) 86, 334, 411, 1106, 1320, 1453, 1502, 1563
CviQI GTAC 5 cut(s) 35, 76, 585, 1000, 1531
DpnI GATC 2 cut(s) 171, 709
DpnII GATC 2 cut(s) 169, 707
EaeI YGGCCR 2 cut(s) 231, 1490
Eam1104I CTCTTC 2 cut(s) 315, 1012
EarI CTCTTC 2 cut(s) 315, 1012
EciI GGCGGA 1 cut(s) 1067
Eco130I CCWWGG 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 215
Eco32I GATATC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 1212
Eco47III AGCGCT 1 cut(s) 347
Eco57I CTGAAG 3 cut(s) 291, 647, 735
Eco88I CYCGRG 3 cut(s) 942, 1219, 1265
EcoO109I RGGNCCY 2 cut(s) 971, 1457
EcoRII CCWGG 6 cut(s) 165, 898, 1197, 1415, 1459, 1492
EcoRV GATATC 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 8 cut(s) 89, 337, 414, 1109, 1323, 1456, 1505, 1566
FalI AAGNNNNNCTT 4 cut(s) 368, 400, 1220, 1252
FatI CATG 8 cut(s) 85, 333, 410, 1105, 1319, 1452, 1501, 1562
FauI CCCGC 3 cut(s) 298, 775, 1199
FblI GTMKAC 1 cut(s) 504
FspBI CTAG 4 cut(s) 111, 483, 873, 1335
GlaI GCGC 2 cut(s) 347, 518
GsaI CCCAGC 2 cut(s) 123, 1390
GsuI CTGGAG 2 cut(s) 1428, 1488
HaeII RGCGCY 1 cut(s) 349
HaeIII GGCC 9 cut(s) 47, 233, 471, 972, 1399, 1459, 1475, 1492, 1599
HapII CCGG 4 cut(s) 226, 652, 1220, 1266
HgaI GACGC 2 cut(s) 865, 1412
HhaI GCGC 2 cut(s) 348, 519
Hin1II CATG 8 cut(s) 89, 337, 414, 1109, 1323, 1456, 1505, 1566
Hin6I GCGC 2 cut(s) 346, 517
HinP1I GCGC 2 cut(s) 346, 517
HincII GTYRAC 3 cut(s) 205, 505, 565
HindII GTYRAC 3 cut(s) 205, 505, 565
HinfI GANTC 3 cut(s) 493, 869, 1258
HpaI GTTAAC 1 cut(s) 205
HpaII CCGG 4 cut(s) 226, 652, 1220, 1266
HphI GGTGA 3 cut(s) 287, 907, 1357
Hpy166II GTNNAC 4 cut(s) 205, 505, 565, 1533
Hpy188I TCNGA 8 cut(s) 241, 271, 490, 733, 1012, 1130, 1216, 1273
Hpy188III TCNNGA 5 cut(s) 373, 605, 944, 1150, 1246
Hpy8I GTNNAC 4 cut(s) 205, 505, 565, 1533
Hpy99I CGWCG 2 cut(s) 881, 1370
HpyAV CCTTC 3 cut(s) 772, 1318, 1581
HpyCH4III ACNGT 8 cut(s) 317, 569, 676, 727, 919, 1253, 1301, 1537
HpyCH4IV ACGT 2 cut(s) 827, 1368
HpyCH4V TGCA 7 cut(s) 85, 102, 447, 698, 1158, 1351, 1486
HpySE526I ACGT 2 cut(s) 827, 1368
Hsp92II CATG 8 cut(s) 89, 337, 414, 1109, 1323, 1456, 1505, 1566
HspAI GCGC 2 cut(s) 346, 517
KspAI GTTAAC 1 cut(s) 205
Kzo9I GATC 2 cut(s) 169, 707
LmnI GCTCC 5 cut(s) 41, 263, 491, 1381, 1511
Lsp1109I GCAGC 4 cut(s) 49, 114, 1122, 1554
LweI GCATC 2 cut(s) 885, 1338
MaeI CTAG 4 cut(s) 111, 483, 873, 1335
MaeII ACGT 2 cut(s) 827, 1368
MaeIII GTNAC 5 cut(s) 571, 919, 1097, 1425, 1541
MalI GATC 2 cut(s) 171, 709
MbiI CCGCTC 2 cut(s) 44, 293
MboI GATC 2 cut(s) 169, 707
MboII GAAGA 7 cut(s) 332, 604, 658, 999, 1117, 1138, 1159
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 165
MlsI TGGCCA 2 cut(s) 233, 1492
MluCI AATT 3 cut(s) 251, 600, 1082
MluNI TGGCCA 2 cut(s) 233, 1492
MmeI TCCRAC 3 cut(s) 711, 1239, 1380
Mox20I TGGCCA 2 cut(s) 233, 1492
MroXI GAANNNNTTC 1 cut(s) 847
MscI TGGCCA 2 cut(s) 233, 1492
MseI TTAA 5 cut(s) 90, 204, 326, 804, 1287
Msp20I TGGCCA 2 cut(s) 233, 1492
MspI CCGG 4 cut(s) 226, 652, 1220, 1266
Mva1269I GAATGC 1 cut(s) 104
MvaI CCWGG 6 cut(s) 167, 900, 1199, 1417, 1461, 1494
NciI CCSGG 5 cut(s) 226, 1220, 1221, 1266, 1267
NdeII GATC 2 cut(s) 169, 707
NlaIII CATG 8 cut(s) 89, 337, 414, 1109, 1323, 1456, 1505, 1566
NlaIV GGNNCC 4 cut(s) 164, 171, 1414, 1458
NmeAIII GCCGAG 1 cut(s) 1465
NmuCI GTSAC 2 cut(s) 1097, 1425
NspI RCATGY 1 cut(s) 89
PaeR7I CTCGAG 1 cut(s) 942
PcsI WCGNNNNNNNCGW 2 cut(s) 1140, 1338
PctI GAATGC 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 847
PfeI GAWTC 3 cut(s) 493, 869, 1258
PflFI GACNNNGTC 2 cut(s) 334, 727
PflMI CCANNNNNTGG 1 cut(s) 1386
PsiI TTATAA 1 cut(s) 792
Psp6I CCWGG 6 cut(s) 165, 898, 1197, 1415, 1459, 1492
PspFI CCCAGC 2 cut(s) 119, 1386
PspGI CCWGG 6 cut(s) 165, 898, 1197, 1415, 1459, 1492
PspN4I GGNNCC 4 cut(s) 164, 171, 1414, 1458
PspPI GGNCC 4 cut(s) 971, 1212, 1457, 1474
PstNI CAGNNNCTG 3 cut(s) 56, 974, 1386
PsuI RGATCY 1 cut(s) 169
PsyI GACNNNGTC 2 cut(s) 334, 727
RsaI GTAC 5 cut(s) 36, 77, 586, 1001, 1532
RsaNI GTAC 5 cut(s) 35, 76, 585, 1000, 1531
SalI GTCGAC 1 cut(s) 503
SaqAI TTAA 5 cut(s) 90, 204, 326, 804, 1287
Sau3AI GATC 2 cut(s) 169, 707
Sau96I GGNCC 4 cut(s) 971, 1212, 1457, 1474
SduI GDGCHC 1 cut(s) 165
SfaNI GCATC 2 cut(s) 885, 1338
SfcI CTRYAG 5 cut(s) 1027, 1087, 1252, 1297, 1536
Sfr274I CTCGAG 1 cut(s) 942
SinI GGWCC 1 cut(s) 1212
SlaI CTCGAG 1 cut(s) 942
SmaI CCCGGG 2 cut(s) 1221, 1267
SmlI CTYRAG 2 cut(s) 942, 1421
SmoI CTYRAG 2 cut(s) 942, 1421
Sse9I AATT 3 cut(s) 251, 600, 1082
SspMI CTAG 4 cut(s) 111, 483, 873, 1335
StyI CCWWGG 1 cut(s) 66
TaaI ACNGT 8 cut(s) 317, 569, 676, 727, 919, 1253, 1301, 1537
TaiI ACGT 2 cut(s) 830, 1371
TaqI TCGA 7 cut(s) 504, 851, 893, 943, 1116, 1392, 1574
TasI AATT 3 cut(s) 251, 600, 1082
TatI WGTACW 2 cut(s) 999, 1530
TauI GCSGC 6 cut(s) 47, 425, 461, 749, 1139, 1142
TfiI GAWTC 3 cut(s) 493, 869, 1258
Tru1I TTAA 5 cut(s) 90, 204, 326, 804, 1287
Tru9I TTAA 5 cut(s) 90, 204, 326, 804, 1287
TscAI CASTG 3 cut(s) 696, 1493, 1540
TseFI GTSAC 2 cut(s) 1097, 1425
TseI GCWGC 4 cut(s) 62, 102, 1110, 1567
Tsp45I GTSAC 2 cut(s) 1097, 1425
TspDTI ATGAA 5 cut(s) 925, 1094, 1111, 1490, 1551
TspGWI ACGGA 2 cut(s) 266, 1231
TspMI CCCGGG 2 cut(s) 1219, 1265
TspRI CASTG 3 cut(s) 696, 1493, 1540
Tth111I GACNNNGTC 2 cut(s) 334, 727
Van91I CCANNNNNTGG 1 cut(s) 1386
VpaK11BI GGWCC 1 cut(s) 1212
XceI RCATGY 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 942
XmaI CCCGGG 2 cut(s) 1219, 1265
XmiI GTMKAC 1 cut(s) 504
XmnI GAANNNNTTC 1 cut(s) 847
XspI CTAG 4 cut(s) 111, 483, 873, 1335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.