Rh2BG106600

Pectinesterase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
8991232 .. 8995041
3810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG106600.1

Sequence Viewer

Length: 1608 bp
ATGTTTCAGTTTGTGGTTTTAGGGTTTCTTTGGGTACTGGGAGGGGCCTCCGTGTCTGGGGCTGCCTTGGAGAAGTACCAAGTGCATGTTAAAAAAGAATGCAGCTTTACTAGATATCCCAGCATTTGTGTTCAAACCTTGATGGGGTTGGGTGGTTCTGGGCAACAGGATCCTCAACAGGTTGATATAATGTCGGCTCTTGTCAACAAGACCATTTATGAGACCCGGTTGGCCACCTCCGAGTTTTCCCAACTCAGCTCCCAAGTATCTGAAGTCCGTGAAGCTCAACCCGCTCACCATTCTGTCAAAGACTACTGTGAAGAGTTAATGACCATGTCCTTGAAGCGCTTAGACCAATCCCTGATAGCTCTCAAGAAGTCTCCCTTGAAAAAAAAGCAAGACATTCAGGCATGGCTAAGTGCCGCCTTGACTTTCGAAGAAACGTGCAAGGACTACGCCGCCGACCACGGCCTCAGCCTCACTAGCTCCGAGAATCTCAGGGTCGACCTTTCCAAGCGCATAGATTATGCCTTTCAGTTGGGAAGTAATCTATTAGCTCTCGTCAACCGTGTTACAAGTATCGGTACGCCGAAGAACACAATTCGCGATAAACAAGCAGAGGTTTTTCCCAAATGGGTTTCGCCGAAGAACCGGAAACTACTTCAGGCAACGACAGTCAAAGCGAACGCAGTGGTTGCACAAGATGGATCAGGGAACTATAAGACTGTGTCGGAGGCTATTCAGGCAGCTTCAGGGGGTCGGTTTGTGATTTATGTGAAGGCGGGAGTTTATAAGGAAAAGATTAAGACTAACAAAGATGGTATTACGTTGATTGGAGATGGAAAGTATTCGACTATTATTACTGGGGATTCTAGCGTCGCTAAAGGTGCTTCGATGCCTGGCTCAGCTACATTCACCGTAACAGGAGATGGGTTCATAGCTCGAGATATTGGTTTCCAAAACACAGCAGGCCCTGATGGAGAACAAGCCTTAGCTCTGTACATCTCTTCTGATCACTCAGTTCTCTACAAGTGTAGCATTGTTGGCTACCAAGACACACTCTACGCACTCGCCCTCCGCCAATTCTACAGAGAATGTGATATTCATGGCAGCCTCGACTTCATCTTCGGAAACGCCGCCGCCGTCTTCCAGAGTTGCAATCTTATCTTCCGCAGGCACAAGGGCTATGGTGCTATCCTGGCAAGCGGGAGGTCCGACCCGGGGCAAAAGACGGGCTTCTCCGTCCAGAACTGTAGGATTCTGCCCGGGTCAGACTTATCTCCTGTTAAACATTCCTACAGTTCGTATCTTGGGAGGCCATGGAAGGCCTACGCTAGAGCCGTGGTGATGCAGTCCAACATAGACGACGTTATCGCTCCCAGAGGCTGGGTCGAGTGGCCTGGGGCTGGAGGTTCCAGCCTCAAGTCACTCTACTTTGCGGAGTTCGCAAACATGGGGCCTGGGGCTGGAGTGGCCCAGAGGGTGCAGTGGCCAGGGTTTCATGTTATTGGAGCTGATATTGCTGTTGAGTACACTGTAGGTAACTTTATTGGTGGAACTTCATGGCTGCCTTCGACTGGTGTGGCTTTTGTTTCTGGCCTCCATTGA

Protein Analysis

535

Amino Acids

57.93

Weight (kDa)

8.94

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMEI PF04043 30 - 187 3.3e-22 Plant invertase/pectin methylesterase inhibitor
Pectinesterase PF01095 229 - 519 2.5e-114 Pectinesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 792
AccB7I CCANNNNNTGG 1 cut(s) 1386
AccBSI CCGCTC 1 cut(s) 293
AccI GTMKAC 1 cut(s) 504
AccII CGCG 1 cut(s) 606
AclWI GGATC 3 cut(s) 164, 177, 715
AcoI YGGCCR 2 cut(s) 231, 1490
AcuI CTGAAG 3 cut(s) 291, 647, 735
AfaI GTAC 5 cut(s) 36, 77, 586, 1001, 1532
AfeI AGCGCT 1 cut(s) 347
AfiI CCNNNNNNNGG 7 cut(s) 57, 144, 1221, 1386, 1406, 1466, 1577
AgsI TTSAA 3 cut(s) 134, 343, 388
AjnI CCWGG 5 cut(s) 898, 1197, 1399, 1459, 1492
Alw26I GTCTC 2 cut(s) 215, 384
AlwI GGATC 3 cut(s) 164, 177, 715
AlwNI CAGNNNCTG 2 cut(s) 974, 1386
Ama87I CYCGRG 3 cut(s) 942, 1219, 1265
Aor51HI AGCGCT 1 cut(s) 347
ApeKI GCWGC 5 cut(s) 62, 102, 746, 1110, 1567
ArsI GACNNNNNNTTYG 2 cut(s) 1109, 1141
Asp700I GAANNNNTTC 1 cut(s) 847
AspLEI GCGC 2 cut(s) 348, 519
AspS9I GGNCC 5 cut(s) 45, 971, 1212, 1457, 1474
AsuC2I CCSGG 5 cut(s) 226, 1220, 1221, 1266, 1267
AsuHPI GGTGA 3 cut(s) 287, 907, 1357
AsuII TTCGAA 1 cut(s) 435
AvaI CYCGRG 3 cut(s) 942, 1219, 1265
AvaII GGWCC 1 cut(s) 1212
BalI TGGCCA 2 cut(s) 233, 1492
BamHI GGATCC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 1138
BbvCI CCTCAGC 1 cut(s) 473
BbvI GCAGC 5 cut(s) 49, 114, 758, 1122, 1554
BccI CCATC 6 cut(s) 136, 698, 812, 833, 923, 971
BceAI ACGGC 3 cut(s) 484, 1127, 1325
BciT130I CCWGG 5 cut(s) 900, 1199, 1401, 1461, 1494
BclI TGATCA 1 cut(s) 1012
BcnI CCSGG 5 cut(s) 226, 1220, 1221, 1266, 1267
BcoDI GTCTC 2 cut(s) 215, 384
BfaI CTAG 4 cut(s) 111, 483, 873, 1335
BfmI CTRYAG 4 cut(s) 1087, 1252, 1297, 1536
BfoI RGCGCY 1 cut(s) 349
BisI GCNGC 9 cut(s) 63, 103, 423, 459, 747, 1111, 1137, 1140, 1568
BlpI GCTNAGC 1 cut(s) 904
BlsI GCNGC 9 cut(s) 64, 104, 424, 460, 748, 1112, 1138, 1141, 1569
Bme18I GGWCC 1 cut(s) 1212
BmeT110I CYCGRG 3 cut(s) 942, 1219, 1265
BmgT120I GGNCC 5 cut(s) 45, 971, 1212, 1457, 1474
BmiI GGNNCC 4 cut(s) 46, 171, 1414, 1458
BmrI ACTGGG 2 cut(s) 47, 873
BmsI GCATC 2 cut(s) 885, 1338
BmuI ACTGGG 2 cut(s) 47, 873
BpiI GAAGAC 1 cut(s) 1138
BpmI CTGGAG 2 cut(s) 1428, 1488
Bpu10I CCTNAGC 2 cut(s) 473, 991
Bpu1102I GCTNAGC 1 cut(s) 904
Bpu14I TTCGAA 1 cut(s) 435
BpuEI CTTGAG 2 cut(s) 356, 1406
BpuMI CCSGG 5 cut(s) 226, 1220, 1221, 1266, 1267
BsaI GGTCTC 1 cut(s) 215
BsaWI WCCGGW 1 cut(s) 651
BsaXI ACNNNNNCTCC 2 cut(s) 1059, 1089
Bsc4I CCNNNNNNNGG 7 cut(s) 57, 144, 1221, 1386, 1406, 1466, 1577
Bse1I ACTGG 3 cut(s) 42, 868, 1582
BseBI CCWGG 5 cut(s) 900, 1199, 1401, 1461, 1494
BseLI CCNNNNNNNGG 7 cut(s) 57, 144, 1221, 1386, 1406, 1466, 1577
BseMII CTCAG 5 cut(s) 268, 487, 511, 918, 1032
BseNI ACTGG 3 cut(s) 42, 868, 1582
BseXI GCAGC 5 cut(s) 49, 114, 758, 1122, 1554
BseYI CCCAGC 2 cut(s) 119, 1386
BsgI GTGCAG 1 cut(s) 1505
Bsh1236I CGCG 1 cut(s) 606
BsiHKCI CYCGRG 3 cut(s) 942, 1219, 1265
BsiSI CCGG 4 cut(s) 226, 652, 1220, 1266
BslI CCNNNNNNNGG 7 cut(s) 57, 144, 1221, 1386, 1406, 1466, 1577
BsmAI GTCTC 2 cut(s) 215, 384
BsmI GAATGC 1 cut(s) 104
Bso31I GGTCTC 1 cut(s) 215
BsoBI CYCGRG 3 cut(s) 942, 1219, 1265
Bsp119I TTCGAA 1 cut(s) 435
Bsp1407I TGTACA 1 cut(s) 999
Bsp143I GATC 3 cut(s) 169, 707, 1012
Bsp1720I GCTNAGC 1 cut(s) 904
Bsp19I CCATGG 1 cut(s) 1319
Bsp68I TCGCGA 1 cut(s) 606
BspCNI CTCAG 5 cut(s) 267, 486, 510, 917, 1031
BspFNI CGCG 1 cut(s) 606
BspLI GGNNCC 4 cut(s) 46, 171, 1414, 1458
BspPI GGATC 3 cut(s) 164, 177, 715
BspT104I TTCGAA 1 cut(s) 435
BspTNI GGTCTC 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 293
BsrGI TGTACA 1 cut(s) 999
BsrI ACTGG 3 cut(s) 42, 868, 1582
BssMI GATC 3 cut(s) 169, 707, 1012
BssT1I CCWWGG 2 cut(s) 66, 1319
Bst2UI CCWGG 5 cut(s) 900, 1199, 1401, 1461, 1494
Bst4CI ACNGT 8 cut(s) 317, 569, 676, 727, 919, 1253, 1301, 1537
Bst6I CTCTTC 2 cut(s) 315, 1012
BstAPI GCANNNNNTGC 1 cut(s) 695
BstAUI TGTACA 1 cut(s) 999
BstBI TTCGAA 1 cut(s) 435
BstC8I GCNNGC 3 cut(s) 970, 1175, 1204
BstDEI CTNAG 8 cut(s) 254, 349, 416, 473, 497, 904, 991, 1018
BstDSI CCRYGG 3 cut(s) 466, 1319, 1341
BstFNI CGCG 1 cut(s) 606
BstH2I RGCGCY 1 cut(s) 349
BstHHI GCGC 2 cut(s) 348, 519
BstKTI GATC 3 cut(s) 172, 710, 1015
BstMAI GTCTC 2 cut(s) 215, 384
BstMBI GATC 3 cut(s) 169, 707, 1012
BstNI CCWGG 5 cut(s) 900, 1199, 1401, 1461, 1494
BstNSI RCATGY 1 cut(s) 89
BstSFI CTRYAG 4 cut(s) 1087, 1252, 1297, 1536
BstUI CGCG 1 cut(s) 606
BstV1I GCAGC 5 cut(s) 49, 114, 758, 1122, 1554
BstV2I GAAGAC 1 cut(s) 1138
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BtgI CCRYGG 3 cut(s) 466, 1319, 1341
BtsI GCAGTG 2 cut(s) 696, 1493
BtsIMutI CAGTG 3 cut(s) 696, 1493, 1533
BtuMI TCGCGA 1 cut(s) 606
Cac8I GCNNGC 3 cut(s) 970, 1175, 1204
CaiI CAGNNNCTG 2 cut(s) 974, 1386
CfoI GCGC 2 cut(s) 348, 519
Cfr13I GGNCC 5 cut(s) 45, 971, 1212, 1457, 1474
Cfr9I CCCGGG 2 cut(s) 1219, 1265
CseI GACGC 1 cut(s) 865
Csp6I GTAC 5 cut(s) 35, 76, 585, 1000, 1531
CviAII CATG 8 cut(s) 86, 334, 411, 1106, 1320, 1453, 1502, 1563
CviQI GTAC 5 cut(s) 35, 76, 585, 1000, 1531
DdeI CTNAG 8 cut(s) 254, 349, 416, 473, 497, 904, 991, 1018
DpnI GATC 3 cut(s) 171, 709, 1014
DpnII GATC 3 cut(s) 169, 707, 1012
EaeI YGGCCR 2 cut(s) 231, 1490
Eam1104I CTCTTC 2 cut(s) 315, 1012
EarI CTCTTC 2 cut(s) 315, 1012
EciI GGCGGA 1 cut(s) 1067
Eco130I CCWWGG 2 cut(s) 66, 1319
Eco147I AGGCCT 1 cut(s) 1328
Eco31I GGTCTC 1 cut(s) 215
Eco32I GATATC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 1212
Eco47III AGCGCT 1 cut(s) 347
Eco57I CTGAAG 3 cut(s) 291, 647, 735
Eco88I CYCGRG 3 cut(s) 942, 1219, 1265
EcoO109I RGGNCCY 3 cut(s) 45, 971, 1457
EcoRII CCWGG 5 cut(s) 898, 1197, 1399, 1459, 1492
EcoRV GATATC 1 cut(s) 116
EcoT14I CCWWGG 2 cut(s) 66, 1319
ErhI CCWWGG 2 cut(s) 66, 1319
FaeI CATG 8 cut(s) 89, 337, 414, 1109, 1323, 1456, 1505, 1566
FalI AAGNNNNNCTT 4 cut(s) 368, 400, 1220, 1252
FatI CATG 8 cut(s) 85, 333, 410, 1105, 1319, 1452, 1501, 1562
FauI CCCGC 3 cut(s) 298, 775, 1199
FbaI TGATCA 1 cut(s) 1012
FblI GTMKAC 1 cut(s) 504
Fnu4HI GCNGC 9 cut(s) 63, 103, 423, 459, 747, 1111, 1137, 1140, 1568
Fsp4HI GCNGC 9 cut(s) 63, 103, 423, 459, 747, 1111, 1137, 1140, 1568
FspBI CTAG 4 cut(s) 111, 483, 873, 1335
GlaI GCGC 2 cut(s) 347, 518
GluI GCNGC 9 cut(s) 63, 103, 423, 459, 747, 1111, 1137, 1140, 1568
GsaI CCCAGC 2 cut(s) 123, 1390
GsuI CTGGAG 2 cut(s) 1428, 1488
HaeII RGCGCY 1 cut(s) 349
HapII CCGG 4 cut(s) 226, 652, 1220, 1266
HgaI GACGC 1 cut(s) 865
HhaI GCGC 2 cut(s) 348, 519
Hin1II CATG 8 cut(s) 89, 337, 414, 1109, 1323, 1456, 1505, 1566
Hin6I GCGC 2 cut(s) 346, 517
HinP1I GCGC 2 cut(s) 346, 517
HincII GTYRAC 3 cut(s) 205, 505, 565
HindII GTYRAC 3 cut(s) 205, 505, 565
HinfI GANTC 3 cut(s) 493, 869, 1258
HpaII CCGG 4 cut(s) 226, 652, 1220, 1266
HphI GGTGA 3 cut(s) 287, 907, 1357
Hpy166II GTNNAC 4 cut(s) 205, 505, 565, 1533
Hpy188I TCNGA 8 cut(s) 241, 271, 490, 733, 1012, 1130, 1216, 1273
Hpy188III TCNNGA 5 cut(s) 373, 605, 944, 1150, 1246
Hpy8I GTNNAC 4 cut(s) 205, 505, 565, 1533
Hpy99I CGWCG 2 cut(s) 881, 1370
HpyAV CCTTC 3 cut(s) 772, 1318, 1581
HpyCH4III ACNGT 8 cut(s) 317, 569, 676, 727, 919, 1253, 1301, 1537
HpyCH4IV ACGT 3 cut(s) 443, 827, 1368
HpyCH4V TGCA 7 cut(s) 85, 102, 447, 698, 1158, 1351, 1486
HpyF3I CTNAG 8 cut(s) 254, 349, 416, 473, 497, 904, 991, 1018
HpySE526I ACGT 3 cut(s) 443, 827, 1368
Hsp92II CATG 8 cut(s) 89, 337, 414, 1109, 1323, 1456, 1505, 1566
HspAI GCGC 2 cut(s) 346, 517
Ksp22I TGATCA 1 cut(s) 1012
Kzo9I GATC 3 cut(s) 169, 707, 1012
LmnI GCTCC 4 cut(s) 263, 491, 1381, 1511
Lsp1109I GCAGC 5 cut(s) 49, 114, 758, 1122, 1554
LweI GCATC 2 cut(s) 885, 1338
MaeI CTAG 4 cut(s) 111, 483, 873, 1335
MaeII ACGT 3 cut(s) 443, 827, 1368
MaeIII GTNAC 4 cut(s) 571, 919, 1425, 1541
MalI GATC 3 cut(s) 171, 709, 1014
MbiI CCGCTC 1 cut(s) 293
MboI GATC 3 cut(s) 169, 707, 1012
MboII GAAGA 8 cut(s) 332, 449, 604, 658, 999, 1117, 1138, 1159
MflI RGATCY 1 cut(s) 169
MlsI TGGCCA 2 cut(s) 233, 1492
MluCI AATT 2 cut(s) 600, 1082
MluNI TGGCCA 2 cut(s) 233, 1492
MmeI TCCRAC 3 cut(s) 711, 1239, 1380
Mox20I TGGCCA 2 cut(s) 233, 1492
MroXI GAANNNNTTC 1 cut(s) 847
MscI TGGCCA 2 cut(s) 233, 1492
MseI TTAA 4 cut(s) 90, 326, 804, 1287
Msp20I TGGCCA 2 cut(s) 233, 1492
MspI CCGG 4 cut(s) 226, 652, 1220, 1266
Mva1269I GAATGC 1 cut(s) 104
MvaI CCWGG 5 cut(s) 900, 1199, 1401, 1461, 1494
MvnI CGCG 1 cut(s) 606
NciI CCSGG 5 cut(s) 226, 1220, 1221, 1266, 1267
NcoI CCATGG 1 cut(s) 1319
NdeII GATC 3 cut(s) 169, 707, 1012
NlaIII CATG 8 cut(s) 89, 337, 414, 1109, 1323, 1456, 1505, 1566
NlaIV GGNNCC 4 cut(s) 46, 171, 1414, 1458
NmuCI GTSAC 1 cut(s) 1425
NruI TCGCGA 1 cut(s) 606
NspI RCATGY 1 cut(s) 89
NspV TTCGAA 1 cut(s) 435
PaeR7I CTCGAG 1 cut(s) 942
PceI AGGCCT 1 cut(s) 1328
PcsI WCGNNNNNNNCGW 2 cut(s) 1140, 1338
PctI GAATGC 1 cut(s) 104
PdmI GAANNNNTTC 1 cut(s) 847
PfeI GAWTC 3 cut(s) 493, 869, 1258
PflFI GACNNNGTC 2 cut(s) 334, 727
PflMI CCANNNNNTGG 1 cut(s) 1386
PkrI GCNGC 9 cut(s) 64, 104, 424, 460, 748, 1112, 1138, 1141, 1569
PsiI TTATAA 1 cut(s) 792
Psp6I CCWGG 5 cut(s) 898, 1197, 1399, 1459, 1492
PspFI CCCAGC 2 cut(s) 119, 1386
PspGI CCWGG 5 cut(s) 898, 1197, 1399, 1459, 1492
PspN4I GGNNCC 4 cut(s) 46, 171, 1414, 1458
PspPI GGNCC 5 cut(s) 45, 971, 1212, 1457, 1474
PstNI CAGNNNCTG 2 cut(s) 974, 1386
PsuI RGATCY 1 cut(s) 169
PsyI GACNNNGTC 2 cut(s) 334, 727
RruI TCGCGA 1 cut(s) 606
RsaI GTAC 5 cut(s) 36, 77, 586, 1001, 1532
RsaNI GTAC 5 cut(s) 35, 76, 585, 1000, 1531
SalI GTCGAC 1 cut(s) 503
SaqAI TTAA 4 cut(s) 90, 326, 804, 1287
SatI GCNGC 9 cut(s) 63, 103, 423, 459, 747, 1111, 1137, 1140, 1568
Sau3AI GATC 3 cut(s) 169, 707, 1012
Sau96I GGNCC 5 cut(s) 45, 971, 1212, 1457, 1474
SfaNI GCATC 2 cut(s) 885, 1338
SfcI CTRYAG 4 cut(s) 1087, 1252, 1297, 1536
Sfr274I CTCGAG 1 cut(s) 942
SfuI TTCGAA 1 cut(s) 435
SinI GGWCC 1 cut(s) 1212
SlaI CTCGAG 1 cut(s) 942
SmaI CCCGGG 2 cut(s) 1221, 1267
SmlI CTYRAG 3 cut(s) 371, 942, 1421
SmoI CTYRAG 3 cut(s) 371, 942, 1421
Sse9I AATT 2 cut(s) 600, 1082
SseBI AGGCCT 1 cut(s) 1328
SspMI CTAG 4 cut(s) 111, 483, 873, 1335
StuI AGGCCT 1 cut(s) 1328
StyI CCWWGG 2 cut(s) 66, 1319
TaaI ACNGT 8 cut(s) 317, 569, 676, 727, 919, 1253, 1301, 1537
TaiI ACGT 3 cut(s) 446, 830, 1371
TaqI TCGA 8 cut(s) 435, 504, 851, 893, 943, 1116, 1392, 1574
TasI AATT 2 cut(s) 600, 1082
TatI WGTACW 2 cut(s) 999, 1530
TauI GCSGC 4 cut(s) 425, 461, 1139, 1142
TfiI GAWTC 3 cut(s) 493, 869, 1258
Tru1I TTAA 4 cut(s) 90, 326, 804, 1287
Tru9I TTAA 4 cut(s) 90, 326, 804, 1287
TscAI CASTG 3 cut(s) 696, 1493, 1540
TseFI GTSAC 1 cut(s) 1425
TseI GCWGC 5 cut(s) 62, 102, 746, 1110, 1567
Tsp45I GTSAC 1 cut(s) 1425
TspDTI ATGAA 5 cut(s) 925, 1094, 1111, 1490, 1551
TspGWI ACGGA 3 cut(s) 40, 266, 1231
TspMI CCCGGG 2 cut(s) 1219, 1265
TspRI CASTG 3 cut(s) 696, 1493, 1540
Tth111I GACNNNGTC 2 cut(s) 334, 727
Van91I CCANNNNNTGG 1 cut(s) 1386
VpaK11BI GGWCC 1 cut(s) 1212
XceI RCATGY 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 942
XmaI CCCGGG 2 cut(s) 1219, 1265
XmiI GTMKAC 1 cut(s) 504
XmnI GAANNNNTTC 1 cut(s) 847
XspI CTAG 4 cut(s) 111, 483, 873, 1335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.