Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008149

Physical Location & Seq

Genomic Coordinates Forward (+)

50944602 .. 50946095

Gene Structure 1494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50504

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGATTTAGAAGACCCCCGCGAGAAGAGAGCCTTCAATGAAGAAGAACTAATGCATCAATGCTCGGAGATTTTAAACTCCGGCACGGACACCATGAACATAATATTACAGTGGACGATGGCGAATGTAGTGAAATACCCACGTGTTCAGAAGAGGCTTGTTGAAGATATTAAAAAGGTGCAATTAGAAGTTGGATTTGCAAGTCAATCTCGATCAGAAAAGAAAAAACAAGAAGGAAAAAAGCTGATTCTACATTTCCAGGCTAGTTGGGCACGCAAAAAAAATTTCGCCCTGGGCATCAAAAAGCTCAGGACCGGCCGTGTTCAGAAGATGCACTACCTAAAAGCGGTGATGATGGAGGCTCTAAGGCTTCACCCACCAGGCCACTATGTGGTGCCACACACGGTTACAGAGGACATTGTTCTGGCTGGACGTTATACGCTGCCAAAGAACTGTACTGTGAATTTTATGGTGGCCGAAATTGGTCGAGACTCGAGTGTGTGGGACGAGCCCATGGAGTTTAAACCTGAAAGGTTTATGAAAGATGGAGGTAACGTACAATGTGATATAACAGGGAGCAAGGAGATTATGATGATACCGTTTGGGGCGGGTAGGAGGATTTGTCAATGCTTCTTTTGGAGTATTTGGTGGCAAATCTGGTTTGGAAGTACGAGTAGGAAGCTGCGGATGGAGTTGGTGTTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00232 ko00380 ko00591 ko00830 ko00980 ko00982 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00232 map00380 map00591 map00830 map00980 map00982 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

235

Amino Acids

27.44

Weight (kDa)

9.43

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	8 - 60	1.1e-08	Cytochrome P450
p450	PF00067	106 - 208	2.4e-29	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008149)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29060
rosa_chinensis	RchiOBHm_Chr2g0133931 RchiOBHm_Chr2g0134061 RchiOBHm_Chr2g0134091 RchiOBHm_Chr2g0134201
rosa_laevigata	RLG00000019370 RLG00000019371 RLG00000019376
rosa_multiflora	Rmu_sc0001782.1_g000008 Rmu_sc0001782.1_g000023 Rmu_sc0001782.1_g000028
rosa_rugosa	Rorug02G0314000 Rorug02G0314100 Rorug02G0314600
rosa_samantha	Rh2BG373400 Rh2BG373600 Rh2BG373800 Rh2CG351400 Rh2DG390200 Rh2DG390500
rosa_wichuraiana	Rw0G010730 Rw2G029880 Rw2G029910 Rw2G029930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	394
AccB7I	CCANNNNNTGG	1 cut(s)	391
AccII	CGCG	1 cut(s)	21
AciI	CCGC	4 cut(s)	19, 347, 608, 685
AcoI	YGGCCR	2 cut(s)	316, 474
AcsI	RAATTY	2 cut(s)	283, 463
AcvI	CACGTG	1 cut(s)	143
AdeI	CACNNNGTG	1 cut(s)	391
AfaI	GTAC	3 cut(s)	457, 558, 670
AfiI	CCNNNNNNNGG	2 cut(s)	346, 391
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	2 cut(s)	37, 164
AjnI	CCWGG	3 cut(s)	258, 291, 379
AluBI	AGCT	3 cut(s)	244, 307, 682
AluI	AGCT	3 cut(s)	244, 307, 682
Alw26I	GTCTC	1 cut(s)	483
Ama87I	CYCGRG	1 cut(s)	493
AoxI	GGCC	3 cut(s)	316, 382, 474
ApeKI	GCWGC	2 cut(s)	442, 682
ApoI	RAATTY	2 cut(s)	283, 463
AspS9I	GGNCC	1 cut(s)	312
AsuHPI	GGTGA	2 cut(s)	361, 365
AvaI	CYCGRG	1 cut(s)	493
AvaII	GGWCC	1 cut(s)	312
BaeGI	GKGCMC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	513
BarI	GAAGNNNNNNTAC	2 cut(s)	320, 352
BbrPI	CACGTG	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	429, 669
BccI	CCATC	4 cut(s)	112, 349, 539, 682
BceAI	ACGGC	1 cut(s)	303
BciT130I	CCWGG	3 cut(s)	260, 293, 381
BcoDI	GTCTC	1 cut(s)	483
BfaI	CTAG	1 cut(s)	264
BisI	GCNGC	2 cut(s)	443, 683
BlsI	GCNGC	2 cut(s)	444, 684
Bme1390I	CCNGG	3 cut(s)	260, 293, 381
Bme18I	GGWCC	1 cut(s)	312
BmeT110I	CYCGRG	1 cut(s)	493
BmgT120I	GGNCC	1 cut(s)	312
BmiI	GGNNCC	1 cut(s)	396
BmrFI	CCNGG	3 cut(s)	260, 293, 381
BmsI	GCATC	3 cut(s)	64, 306, 321
BpiI	GAAGAC	1 cut(s)	18
Bpu10I	CCTNAGC	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	143
BsaJI	CCNNGG	3 cut(s)	291, 292, 513
BsaXI	ACNNNNNCTCC	5 cut(s)	540, 570, 607, 637, 683
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 391
Bse118I	RCCGGY	1 cut(s)	314
BseBI	CCWGG	3 cut(s)	260, 293, 381
BseDI	CCNNGG	3 cut(s)	291, 292, 513
BseGI	GGATG	1 cut(s)	693
BseLI	CCNNNNNNNGG	2 cut(s)	346, 391
BseMII	CTCAG	1 cut(s)	322
BseSI	GKGCMC	1 cut(s)	274
BseX3I	CGGCCG	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	429, 669
Bsh1236I	CGCG	1 cut(s)	21
Bsh1285I	CGRYCG	1 cut(s)	319
BshFI	GGCC	3 cut(s)	318, 384, 476
BshNI	GGYRCC	1 cut(s)	394
BsiEI	CGRYCG	1 cut(s)	319
BsiHKCI	CYCGRG	1 cut(s)	493
BsiSI	CCGG	2 cut(s)	81, 315
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	2 cut(s)	346, 391
BsmAI	GTCTC	1 cut(s)	483
BsmFI	GGGAC	1 cut(s)	518
BsnI	GGCC	3 cut(s)	318, 384, 476
BsoBI	CYCGRG	1 cut(s)	493
Bsp1286I	GDGCHC	2 cut(s)	274, 513
Bsp143I	GATC	1 cut(s)	212
Bsp19I	CCATGG	1 cut(s)	513
BspACI	CCGC	4 cut(s)	19, 347, 608, 685
BspANI	GGCC	3 cut(s)	318, 384, 476
BspCNI	CTCAG	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	396
BspT107I	GGYRCC	1 cut(s)	394
BsrFI	RCCGGY	1 cut(s)	314
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	3 cut(s)	291, 292, 513
BssMI	GATC	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	513
Bst2UI	CCWGG	3 cut(s)	260, 293, 381
Bst4CI	ACNGT	5 cut(s)	111, 406, 455, 460, 600
Bst6I	CTCTTC	2 cut(s)	20, 146
BstBAI	YACGTR	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	2 cut(s)	308, 365
BstDSI	CCRYGG	1 cut(s)	513
BstF5I	GGATG	1 cut(s)	693
BstFNI	CGCG	1 cut(s)	21
BstKTI	GATC	1 cut(s)	215
BstMAI	GTCTC	1 cut(s)	483
BstMBI	GATC	1 cut(s)	212
BstMCI	CGRYCG	1 cut(s)	319
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	3 cut(s)	260, 293, 381
BstSCI	CCNGG	3 cut(s)	258, 291, 379
BstSLI	GKGCMC	1 cut(s)	274
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	429, 669
BstV2I	GAAGAC	1 cut(s)	18
BstZI	CGGCCG	1 cut(s)	316
BsuRI	GGCC	3 cut(s)	318, 384, 476
BtgI	CCRYGG	1 cut(s)	513
BtsCI	GGATG	1 cut(s)	693
BtsIMutI	CAGTG	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	274
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	1 cut(s)	312
Csp6I	GTAC	3 cut(s)	456, 557, 669
CviAII	CATG	2 cut(s)	94, 514
CviQI	GTAC	3 cut(s)	456, 557, 669
DdeI	CTNAG	2 cut(s)	308, 365
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
DraI	TTTAAA	2 cut(s)	75, 523
DraIII	CACNNNGTG	1 cut(s)	391
EaeI	YGGCCR	2 cut(s)	316, 474
EagI	CGGCCG	1 cut(s)	316
Eam1104I	CTCTTC	2 cut(s)	20, 146
EarI	CTCTTC	2 cut(s)	20, 146
EclXI	CGGCCG	1 cut(s)	316
Eco130I	CCWWGG	1 cut(s)	513
Eco24I	GRGCYC	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	312
Eco52I	CGGCCG	1 cut(s)	316
Eco72I	CACGTG	1 cut(s)	143
Eco88I	CYCGRG	1 cut(s)	493
EcoRII	CCWGG	3 cut(s)	258, 291, 379
EcoT14I	CCWWGG	1 cut(s)	513
EcoT22I	ATGCAT	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	2 cut(s)	97, 517
FaiI	YATR	9 cut(s)	95, 101, 390, 438, 470, 515, 539, 569, 590
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	2 cut(s)	93, 513
FauI	CCCGC	2 cut(s)	26, 601
Fnu4HI	GCNGC	2 cut(s)	443, 683
FokI	GGATG	1 cut(s)	700
FriOI	GRGCYC	1 cut(s)	513
Fsp4HI	GCNGC	2 cut(s)	443, 683
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	2 cut(s)	443, 683
HaeIII	GGCC	3 cut(s)	318, 384, 476
HapII	CCGG	2 cut(s)	81, 315
Hin1II	CATG	2 cut(s)	97, 517
HinfI	GANTC	2 cut(s)	247, 491
HpaII	CCGG	2 cut(s)	81, 315
HphI	GGTGA	2 cut(s)	361, 365
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	4 cut(s)	67, 150, 217, 327
Hpy188III	TCNNGA	3 cut(s)	210, 310, 488
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	2 cut(s)	43, 227
HpyCH4III	ACNGT	5 cut(s)	111, 406, 455, 460, 600
HpyCH4IV	ACGT	3 cut(s)	142, 433, 555
HpyCH4V	TGCA	4 cut(s)	55, 181, 200, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	2 cut(s)	308, 365
HpySE526I	ACGT	3 cut(s)	142, 433, 555
Hsp92II	CATG	2 cut(s)	97, 517
Kzo9I	GATC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	576
Lsp1109I	GCAGC	2 cut(s)	429, 669
LweI	GCATC	3 cut(s)	64, 306, 321
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	3 cut(s)	142, 433, 555
MaeIII	GTNAC	2 cut(s)	406, 551
MalI	GATC	1 cut(s)	214
MboI	GATC	1 cut(s)	212
MboII	GAAGA	7 cut(s)	23, 37, 53, 56, 163, 176, 340
MhlI	GDGCHC	2 cut(s)	274, 513
MluCI	AATT	4 cut(s)	182, 283, 463, 480
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	5 cut(s)	147, 352, 406, 542, 609
Mph1103I	ATGCAT	1 cut(s)	57
MseI	TTAA	3 cut(s)	74, 171, 522
MspI	CCGG	2 cut(s)	81, 315
MspR9I	CCNGG	3 cut(s)	260, 293, 381
MssI	GTTTAAAC	1 cut(s)	523
MvaI	CCWGG	3 cut(s)	260, 293, 381
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	269
NcoI	CCATGG	1 cut(s)	513
NdeII	GATC	1 cut(s)	212
NlaIII	CATG	2 cut(s)	97, 517
NlaIV	GGNNCC	1 cut(s)	396
NsiI	ATGCAT	1 cut(s)	57
PaeR7I	CTCGAG	1 cut(s)	493
PasI	CCCWGGG	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	247
PflMI	CCANNNNNTGG	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	444, 684
PleI	GAGTC	1 cut(s)	485
PmaCI	CACGTG	1 cut(s)	143
PmeI	GTTTAAAC	1 cut(s)	523
PmlI	CACGTG	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	485
Ppu21I	YACGTR	1 cut(s)	143
Psp6I	CCWGG	3 cut(s)	258, 291, 379
PspCI	CACGTG	1 cut(s)	143
PspGI	CCWGG	3 cut(s)	258, 291, 379
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	1 cut(s)	312
PspXI	VCTCGAGB	1 cut(s)	493
RsaI	GTAC	3 cut(s)	457, 558, 670
RsaNI	GTAC	3 cut(s)	456, 557, 669
SaqAI	TTAA	3 cut(s)	74, 171, 522
SatI	GCNGC	2 cut(s)	443, 683
Sau3AI	GATC	1 cut(s)	212
Sau96I	GGNCC	1 cut(s)	312
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	3 cut(s)	260, 293, 381
SduI	GDGCHC	2 cut(s)	274, 513
SfaNI	GCATC	3 cut(s)	64, 306, 321
Sfr274I	CTCGAG	1 cut(s)	493
SinI	GGWCC	1 cut(s)	312
SlaI	CTCGAG	1 cut(s)	493
SmlI	CTYRAG	1 cut(s)	493
SmoI	CTYRAG	1 cut(s)	493
Sse9I	AATT	4 cut(s)	182, 283, 463, 480
SsiI	CCGC	4 cut(s)	19, 347, 608, 685
SspI	AATATT	1 cut(s)	105
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	3 cut(s)	258, 291, 379
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	5 cut(s)	111, 406, 455, 460, 600
TaiI	ACGT	3 cut(s)	145, 436, 558
TaqI	TCGA	3 cut(s)	211, 487, 494
TasI	AATT	4 cut(s)	182, 283, 463, 480
TatI	WGTACW	1 cut(s)	455
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	3 cut(s)	74, 171, 522
Tru9I	TTAA	3 cut(s)	74, 171, 522
TscAI	CASTG	1 cut(s)	116
TseI	GCWGC	2 cut(s)	442, 682
TspDTI	ATGAA	3 cut(s)	54, 110, 554
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	116
Van91I	CCANNNNNTGG	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	312
XapI	RAATTY	2 cut(s)	283, 463
XhoI	CTCGAG	1 cut(s)	493
XspI	CTAG	1 cut(s)	264
Zsp2I	ATGCAT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.