Rh2BG373400

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0008149
Physical Location & Seq
Forward (+)
52416271 .. 52416624
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG373400.1

Sequence Viewer

Length: 354 bp
ATGGAGGCTCTAAGGCTTCACCCACCAGGCCACTATGTGGTGCCACACACGGTTACAGAGGACATTGTTCTGGCTGGACGTTATACGCTGCCAAAGAACTGTACTGTGAATTTTATGGTGGCCGAAATTGGTCGAGACTCGAGTGTGTGGGACGAGCCCATGGAGTTTAAACCTGAAAGGTTTATGAAAGATGGAGGTAACGTACAATGTGATATAACAGGGAGCAAGGAGATTATGATGATACCGTTTGGGGCGGGTAGGAGGATTTGTCAATGCTTCTTTTGGAGTATTTGGTGGCAAATCTGGTTTGGAAGTACGAGTAGGAAGCTGCGGATGGAGTTGGTGTTGATTTGA

Protein Analysis

117

Amino Acids

13.58

Weight (kDa)

6.82

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 90 2e-24 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 40
AccB7I CCANNNNNTGG 1 cut(s) 37
AciI CCGC 2 cut(s) 254, 331
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 109
AdeI CACNNNGTG 1 cut(s) 37
AfaI GTAC 3 cut(s) 103, 204, 316
AfiI CCNNNNNNNGG 1 cut(s) 37
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 1 cut(s) 328
AluI AGCT 1 cut(s) 328
Alw26I GTCTC 1 cut(s) 129
Ama87I CYCGRG 1 cut(s) 139
AoxI GGCC 2 cut(s) 28, 120
ApeKI GCWGC 2 cut(s) 88, 328
ApoI RAATTY 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 11
AvaI CYCGRG 1 cut(s) 139
BanI GGYRCC 1 cut(s) 40
BanII GRGCYC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 75, 315
BccI CCATC 2 cut(s) 185, 328
BciT130I CCWGG 1 cut(s) 27
BcoDI GTCTC 1 cut(s) 129
BisI GCNGC 2 cut(s) 89, 329
BlsI GCNGC 2 cut(s) 90, 330
Bme1390I CCNGG 1 cut(s) 27
BmeT110I CYCGRG 1 cut(s) 139
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 159
BsaXI ACNNNNNCTCC 5 cut(s) 186, 216, 253, 283, 329
Bsc4I CCNNNNNNNGG 1 cut(s) 37
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 339
BseLI CCNNNNNNNGG 1 cut(s) 37
BseXI GCAGC 2 cut(s) 75, 315
BshFI GGCC 2 cut(s) 30, 122
BshNI GGYRCC 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 139
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 2 cut(s) 30, 122
BsoBI CYCGRG 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 159
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 2 cut(s) 254, 331
BspANI GGCC 2 cut(s) 30, 122
BspLI GGNNCC 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 4 cut(s) 52, 101, 106, 246
BstDEI CTNAG 1 cut(s) 11
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 339
BstMAI GTCTC 1 cut(s) 129
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 25
BstV1I GCAGC 2 cut(s) 75, 315
BsuRI GGCC 2 cut(s) 30, 122
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 339
Csp6I GTAC 3 cut(s) 102, 203, 315
CviAII CATG 1 cut(s) 160
CviJI RGCY 7 cut(s) 8, 16, 30, 74, 122, 157, 328
CviKI_1 RGCY 7 cut(s) 8, 16, 30, 74, 122, 157, 328
CviQI GTAC 3 cut(s) 102, 203, 315
DdeI CTNAG 1 cut(s) 11
DraI TTTAAA 1 cut(s) 169
DraIII CACNNNGTG 1 cut(s) 37
EaeI YGGCCR 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 159
Eco24I GRGCYC 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 1 cut(s) 163
FaiI YATR 7 cut(s) 36, 84, 116, 161, 185, 215, 236
FaqI GGGAC 1 cut(s) 164
FatI CATG 1 cut(s) 159
FauI CCCGC 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 89, 329
FokI GGATG 1 cut(s) 346
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 2 cut(s) 89, 329
GluI GCNGC 2 cut(s) 89, 329
HaeIII GGCC 2 cut(s) 30, 122
Hin1II CATG 1 cut(s) 163
HinfI GANTC 1 cut(s) 137
HphI GGTGA 1 cut(s) 11
Hpy188III TCNNGA 1 cut(s) 134
HpyCH4III ACNGT 4 cut(s) 52, 101, 106, 246
HpyCH4IV ACGT 2 cut(s) 79, 201
HpyF3I CTNAG 1 cut(s) 11
HpySE526I ACGT 2 cut(s) 79, 201
Hsp92II CATG 1 cut(s) 163
LmnI GCTCC 1 cut(s) 222
LpnPI CCDG 7 cut(s) 12, 39, 56, 60, 186, 204, 289
Lsp1109I GCAGC 2 cut(s) 75, 315
MaeII ACGT 2 cut(s) 79, 201
MaeIII GTNAC 2 cut(s) 52, 197
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 2 cut(s) 109, 126
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 3 cut(s) 52, 188, 255
MseI TTAA 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 27
MssI GTTTAAAC 1 cut(s) 169
MvaI CCWGG 1 cut(s) 27
NcoI CCATGG 1 cut(s) 159
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 1 cut(s) 42
PaeR7I CTCGAG 1 cut(s) 139
PflMI CCANNNNNTGG 1 cut(s) 37
PkrI GCNGC 2 cut(s) 90, 330
PleI GAGTC 1 cut(s) 131
PmeI GTTTAAAC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 42
PspXI VCTCGAGB 1 cut(s) 139
RsaI GTAC 3 cut(s) 103, 204, 316
RsaNI GTAC 3 cut(s) 102, 203, 315
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 2 cut(s) 89, 329
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 1 cut(s) 159
SetI ASST 6 cut(s) 82, 175, 182, 199, 204, 330
Sfr274I CTCGAG 1 cut(s) 139
SlaI CTCGAG 1 cut(s) 139
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
Sse9I AATT 2 cut(s) 109, 126
SsiI CCGC 2 cut(s) 254, 331
StyD4I CCNGG 1 cut(s) 25
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 4 cut(s) 52, 101, 106, 246
TaiI ACGT 2 cut(s) 82, 204
TaqI TCGA 2 cut(s) 133, 140
TasI AATT 2 cut(s) 109, 126
TatI WGTACW 1 cut(s) 101
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseI GCWGC 2 cut(s) 88, 328
TspDTI ATGAA 1 cut(s) 200
Van91I CCANNNNNTGG 1 cut(s) 37
XapI RAATTY 1 cut(s) 109
XhoI CTCGAG 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.