RLG00000019371

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008149
Physical Location & Seq
Forward (+)
50999880 .. 51001137
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019371

Sequence Viewer

Length: 474 bp
ATGCACTATTTGAAAGCAGTGGTGATGGAGGCCCTAAGGCTTCACCTACCAGGCCACTTTGTGGTTCCACACTCGCTTACAAAGGACATTGTTCTGGATGGACGTTATATGCTGCCAAAGAACTGTATTGTGAATTTCATGGTTGCGGAAATGGGTCGGGACCCGAGTGTTTGGGACGAGCCCATGGAGTTTAAGCCTGAGAGGTTTCTGAGTGATGGAGATAATGTACAGTATGATATAATAGGGAGTAAAGAGATTAAGATGACACCTTTTGGGGCGGGGAGGAGGACATGTCCCTGGTGTCACAACTTTATTGAGAGACAGAGATTTAGGGACAGAAGATTTGAAGCCCCGAGGTGGGGTTTGTCCATGCTTCTTTTGGAGTATTTGGTGGCAAATTTAATTTGGAAGTACAAGTGGGAAGCTATCGATGGAGTTGGTGTTAATGTGACAGAGAAGCAAGAGGCGACCTAG

Protein Analysis

158

Amino Acids

18.4

Weight (kDa)

6.96

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 99 4.7e-28 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 61
AciI CCGC 2 cut(s) 146, 278
AcsI RAATTY 2 cut(s) 133, 397
AdeI CACNNNGTG 1 cut(s) 61
AfaI GTAC 2 cut(s) 228, 413
AfiI CCNNNNNNNGG 4 cut(s) 61, 357, 358, 359
AflIII ACRYGT 1 cut(s) 290
AgsI TTSAA 2 cut(s) 13, 347
AjnI CCWGG 2 cut(s) 49, 296
AluBI AGCT 1 cut(s) 425
AluI AGCT 1 cut(s) 425
Alw26I GTCTC 1 cut(s) 313
Ama87I CYCGRG 2 cut(s) 163, 352
AoxI GGCC 2 cut(s) 30, 52
ApeKI GCWGC 1 cut(s) 112
ApoI RAATTY 2 cut(s) 133, 397
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspS9I GGNCC 2 cut(s) 31, 160
AsuHPI GGTGA 2 cut(s) 34, 35
AvaI CYCGRG 2 cut(s) 163, 352
AvaII GGWCC 1 cut(s) 160
AxyI CCTNAGG 1 cut(s) 35
BanII GRGCYC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 99
BccI CCATC 4 cut(s) 19, 92, 209, 425
BciT130I CCWGG 2 cut(s) 51, 298
BcoDI GTCTC 1 cut(s) 313
BfaI CTAG 1 cut(s) 472
BisI GCNGC 1 cut(s) 113
BlsI GCNGC 1 cut(s) 114
Bme1390I CCNGG 2 cut(s) 51, 298
Bme18I GGWCC 1 cut(s) 160
BmeT110I CYCGRG 2 cut(s) 163, 352
BmgT120I GGNCC 2 cut(s) 31, 160
BmiI GGNNCC 3 cut(s) 66, 161, 162
BmrFI CCNGG 2 cut(s) 51, 298
Bsa29I ATCGAT 1 cut(s) 429
BsaJI CCNNGG 3 cut(s) 183, 296, 353
BsaXI ACNNNNNCTCC 6 cut(s) 210, 240, 277, 307, 426, 456
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 357, 358, 359
Bse21I CCTNAGG 1 cut(s) 35
BseBI CCWGG 2 cut(s) 51, 298
BseCI ATCGAT 1 cut(s) 429
BseDI CCNNGG 3 cut(s) 183, 296, 353
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 4 cut(s) 61, 357, 358, 359
BseMII CTCAG 2 cut(s) 189, 200
BseRI GAGGAG 1 cut(s) 298
BseXI GCAGC 1 cut(s) 99
BshFI GGCC 2 cut(s) 32, 54
BshVI ATCGAT 1 cut(s) 429
BsiHKCI CYCGRG 2 cut(s) 163, 352
BslFI GGGAC 4 cut(s) 173, 188, 279, 347
BslI CCNNNNNNNGG 4 cut(s) 61, 357, 358, 359
BsmAI GTCTC 1 cut(s) 313
BsmFI GGGAC 4 cut(s) 173, 188, 279, 347
BsnI GGCC 2 cut(s) 32, 54
BsoBI CYCGRG 2 cut(s) 163, 352
Bsp1286I GDGCHC 1 cut(s) 183
Bsp1407I TGTACA 1 cut(s) 226
Bsp19I CCATGG 1 cut(s) 183
BspACI CCGC 2 cut(s) 146, 278
BspANI GGCC 2 cut(s) 32, 54
BspCNI CTCAG 2 cut(s) 190, 201
BspDI ATCGAT 1 cut(s) 429
BspLI GGNNCC 3 cut(s) 66, 161, 162
BsrGI TGTACA 1 cut(s) 226
BssECI CCNNGG 3 cut(s) 183, 296, 353
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 2 cut(s) 51, 298
Bst4CI ACNGT 2 cut(s) 125, 231
BstAUI TGTACA 1 cut(s) 226
BstDEI CTNAG 3 cut(s) 35, 198, 209
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 313
BstNI CCWGG 2 cut(s) 51, 298
BstNSI RCATGY 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 49, 296
BstV1I GCAGC 1 cut(s) 99
Bsu15I ATCGAT 1 cut(s) 429
Bsu36I CCTNAGG 1 cut(s) 35
BsuRI GGCC 2 cut(s) 32, 54
BsuTUI ATCGAT 1 cut(s) 429
BtgI CCRYGG 1 cut(s) 183
BtsCI GGATG 1 cut(s) 103
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
Cfr13I GGNCC 2 cut(s) 31, 160
ClaI ATCGAT 1 cut(s) 429
Csp6I GTAC 2 cut(s) 227, 412
CviAII CATG 4 cut(s) 139, 184, 291, 370
CviJI RGCY 7 cut(s) 32, 40, 54, 181, 196, 350, 425
CviKI_1 RGCY 7 cut(s) 32, 40, 54, 181, 196, 350, 425
CviQI GTAC 2 cut(s) 227, 412
DdeI CTNAG 3 cut(s) 35, 198, 209
DraIII CACNNNGTG 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 160
Eco81I CCTNAGG 1 cut(s) 35
Eco88I CYCGRG 2 cut(s) 163, 352
EcoO109I RGGNCCY 2 cut(s) 31, 160
EcoRII CCWGG 2 cut(s) 49, 296
EcoT14I CCWWGG 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 4 cut(s) 142, 187, 294, 373
FaiI YATR 8 cut(s) 108, 110, 140, 185, 234, 239, 292, 371
FaqI GGGAC 4 cut(s) 173, 188, 279, 347
FatI CATG 4 cut(s) 138, 183, 290, 369
FauI CCCGC 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 113
FokI GGATG 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 113
FspBI CTAG 1 cut(s) 472
GluI GCNGC 1 cut(s) 113
HaeIII GGCC 2 cut(s) 32, 54
Hin1II CATG 4 cut(s) 142, 187, 294, 373
HphI GGTGA 2 cut(s) 34, 35
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 2 cut(s) 95, 158
HpyCH4III ACNGT 2 cut(s) 125, 231
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 3 cut(s) 35, 198, 209
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 4 cut(s) 142, 187, 294, 373
KflI GGGWCCC 1 cut(s) 160
LpnPI CCDG 6 cut(s) 36, 63, 80, 210, 283, 310
Lsp1109I GCAGC 1 cut(s) 99
MaeI CTAG 1 cut(s) 472
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 2 cut(s) 302, 448
MboII GAAGA 1 cut(s) 351
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 3 cut(s) 133, 397, 402
MnlI CCTC 6 cut(s) 22, 195, 276, 279, 348, 457
MseI TTAA 4 cut(s) 192, 258, 401, 444
MspR9I CCNGG 2 cut(s) 51, 298
MvaI CCWGG 2 cut(s) 51, 298
NcoI CCATGG 1 cut(s) 183
NlaIII CATG 4 cut(s) 142, 187, 294, 373
NlaIV GGNNCC 3 cut(s) 66, 161, 162
NmuCI GTSAC 2 cut(s) 302, 448
NspI RCATGY 1 cut(s) 294
PciI ACATGT 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 61
PkrI GCNGC 1 cut(s) 114
PpuMI RGGWCCY 1 cut(s) 160
PscI ACATGT 1 cut(s) 290
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 2 cut(s) 49, 296
PspGI CCWGG 2 cut(s) 49, 296
PspN4I GGNNCC 3 cut(s) 66, 161, 162
PspPI GGNCC 2 cut(s) 31, 160
PspPPI RGGWCCY 1 cut(s) 160
RsaI GTAC 2 cut(s) 228, 413
RsaNI GTAC 2 cut(s) 227, 412
SaqAI TTAA 4 cut(s) 192, 258, 401, 444
SatI GCNGC 1 cut(s) 113
Sau96I GGNCC 2 cut(s) 31, 160
ScrFI CCNGG 2 cut(s) 51, 298
SduI GDGCHC 1 cut(s) 183
SetI ASST 7 cut(s) 48, 106, 206, 271, 359, 427, 473
SinI GGWCC 1 cut(s) 160
Sse9I AATT 3 cut(s) 133, 397, 402
SsiI CCGC 2 cut(s) 146, 278
SspMI CTAG 1 cut(s) 472
StyD4I CCNGG 2 cut(s) 49, 296
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 125, 231
TaiI ACGT 1 cut(s) 106
TaqI TCGA 1 cut(s) 429
TasI AATT 3 cut(s) 133, 397, 402
TatI WGTACW 2 cut(s) 226, 411
Tru1I TTAA 4 cut(s) 192, 258, 401, 444
Tru9I TTAA 4 cut(s) 192, 258, 401, 444
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 2 cut(s) 302, 448
TseI GCWGC 1 cut(s) 112
Tsp45I GTSAC 2 cut(s) 302, 448
TspDTI ATGAA 1 cut(s) 127
TspRI CASTG 1 cut(s) 24
Van91I CCANNNNNTGG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 2 cut(s) 133, 397
XceI RCATGY 1 cut(s) 294
XcmI CCANNNNNNNNNTGG 1 cut(s) 376
XspI CTAG 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.