Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008149

Physical Location & Seq

Genomic Coordinates Forward (+)

38015540 .. 38016714

Gene Structure 1175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0314100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTATGTGTACCTGTGTAGAAATCTGAGAAGAGAAGAAAAAAGAAAGTGGTATAGGACGACGAACTCTCTAAGGATTGAGTTTAGCCTACAGTCATTGGCAGCTTCCTTACCAAATTCATTGAGCATGTTGTGCACGTGGGGTGAGGTCGGATTCAAAGATGGGAAGACTATCACCATTCAAATTGAGCCTGAAGTATTTGGGCGTGCACGGAAAACATTTATACTAGGACAAGATGTGCTCATAATTGCAACCATGAGTGAAATAACTGGGAACTGTATAGTGATATACCAAAGGTACCTCTATGATGTCCTCAGTGAATATAAAATGTTGGATATGGTTGCTTTTGTTAACCCTGCGATGATTGGTGCAATTGGGTGTGGGAAATGCCAGGAAAGGTCCCAACATATAAAGGAGAGGCTGATAACTACAAAACCTAGACAGATATACATGCTGCCGTATAACTCAGATAAACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00232 ko00380 ko00591 ko00830 ko00980 ko00982 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00232 map00380 map00591 map00830 map00980 map00982 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

159

Amino Acids

18.47

Weight (kDa)

9.24

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008149)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29060
rosa_chinensis	RchiOBHm_Chr2g0133931 RchiOBHm_Chr2g0134061 RchiOBHm_Chr2g0134091 RchiOBHm_Chr2g0134201
rosa_laevigata	RLG00000019370 RLG00000019371 RLG00000019376
rosa_multiflora	Rmu_sc0001782.1_g000008 Rmu_sc0001782.1_g000023 Rmu_sc0001782.1_g000028
rosa_rugosa	Rorug02G0314000 Rorug02G0314100 Rorug02G0314600
rosa_samantha	Rh2BG373400 Rh2BG373600 Rh2BG373800 Rh2CG351400 Rh2DG390200 Rh2DG390500
rosa_wichuraiana	Rw0G010730 Rw2G029880 Rw2G029910 Rw2G029930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	297
AccB1I	GGYRCC	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	115
AcuI	CTGAAG	1 cut(s)	213
AcvI	CACGTG	1 cut(s)	138
AfaI	GTAC	2 cut(s)	11, 299
AgsI	TTSAA	2 cut(s)	157, 182
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
Alw21I	GWGCWC	3 cut(s)	137, 211, 243
Alw44I	GTGCAC	2 cut(s)	133, 207
ApaLI	GTGCAC	2 cut(s)	133, 207
ApeKI	GCWGC	2 cut(s)	101, 454
ApoI	RAATTY	1 cut(s)	115
Asp718I	GGTACC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	399
AsuHPI	GGTGA	2 cut(s)	155, 166
AvaII	GGWCC	1 cut(s)	399
BaeGI	GKGCMC	2 cut(s)	137, 211
BanI	GGYRCC	1 cut(s)	297
BbrPI	CACGTG	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	173
Bbv12I	GWGCWC	3 cut(s)	137, 211, 243
BbvI	GCAGC	2 cut(s)	113, 441
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	442
BciT130I	CCWGG	1 cut(s)	392
BfaI	CTAG	2 cut(s)	227, 438
BfmI	CTRYAG	1 cut(s)	89
BisI	GCNGC	2 cut(s)	102, 455
BlsI	GCNGC	2 cut(s)	103, 456
Bme1390I	CCNGG	1 cut(s)	392
Bme18I	GGWCC	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	399
BmiI	GGNNCC	2 cut(s)	299, 401
BmrFI	CCNGG	1 cut(s)	392
BmrI	ACTGGG	1 cut(s)	279
BmuI	ACTGGG	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	392
BseMII	CTCAG	3 cut(s)	17, 328, 480
BseNI	ACTGG	1 cut(s)	274
BseSI	GKGCMC	2 cut(s)	137, 211
BseXI	GCAGC	2 cut(s)	113, 441
BshNI	GGYRCC	1 cut(s)	297
BsiHKAI	GWGCWC	3 cut(s)	137, 211, 243
BslFI	GGGAC	1 cut(s)	385
BsmFI	GGGAC	1 cut(s)	385
Bsp1286I	GDGCHC	3 cut(s)	137, 211, 243
BspCNI	CTCAG	3 cut(s)	18, 327, 479
BspLI	GGNNCC	2 cut(s)	299, 401
BspT107I	GGYRCC	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	2 cut(s)	93, 278
Bst6I	CTCTTC	1 cut(s)	25
BstAPI	GCANNNNNTGC	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	4 cut(s)	26, 71, 314, 466
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNI	CCWGG	1 cut(s)	392
BstNSI	RCATGY	2 cut(s)	130, 454
BstSCI	CCNGG	1 cut(s)	390
BstSFI	CTRYAG	1 cut(s)	89
BstSLI	GKGCMC	2 cut(s)	137, 211
BstV1I	GCAGC	2 cut(s)	113, 441
BstV2I	GAAGAC	1 cut(s)	173
BtgZI	GCGATG	1 cut(s)	374
BtsIMutI	CAGTG	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	399
Csp6I	GTAC	2 cut(s)	10, 298
CviAII	CATG	3 cut(s)	127, 256, 451
CviJI	RGCY	4 cut(s)	87, 104, 190, 421
CviKI_1	RGCY	4 cut(s)	87, 104, 190, 421
CviQI	GTAC	2 cut(s)	10, 298
DdeI	CTNAG	4 cut(s)	26, 71, 314, 466
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	399
Eco57I	CTGAAG	1 cut(s)	213
Eco72I	CACGTG	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	399
EcoRII	CCWGG	1 cut(s)	390
FaeI	CATG	3 cut(s)	130, 259, 454
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	3 cut(s)	126, 255, 450
Fnu4HI	GCNGC	2 cut(s)	102, 455
Fsp4HI	GCNGC	2 cut(s)	102, 455
FspBI	CTAG	2 cut(s)	227, 438
GluI	GCNGC	2 cut(s)	102, 455
Hin1II	CATG	3 cut(s)	130, 259, 454
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	1 cut(s)	153
HpaI	GTTAAC	1 cut(s)	352
HphI	GGTGA	2 cut(s)	155, 166
Hpy166II	GTNNAC	4 cut(s)	10, 135, 209, 352
Hpy188I	TCNGA	3 cut(s)	27, 152, 469
Hpy8I	GTNNAC	4 cut(s)	10, 135, 209, 352
Hpy99I	CGWCG	1 cut(s)	64
HpyCH4III	ACNGT	2 cut(s)	93, 278
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	4 cut(s)	135, 209, 251, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	4 cut(s)	26, 71, 314, 466
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	3 cut(s)	130, 259, 454
KpnI	GGTACC	1 cut(s)	301
KspAI	GTTAAC	1 cut(s)	352
LpnPI	CCDG	6 cut(s)	26, 204, 255, 369, 377, 404
Lsp1109I	GCAGC	2 cut(s)	113, 441
MaeI	CTAG	2 cut(s)	227, 438
MaeII	ACGT	1 cut(s)	137
MboII	GAAGA	3 cut(s)	42, 47, 178
MfeI	CAATTG	1 cut(s)	372
MhlI	GDGCHC	3 cut(s)	137, 211, 243
MluCI	AATT	4 cut(s)	115, 183, 246, 372
MmeI	TCCRAC	2 cut(s)	130, 312
MnlI	CCTC	4 cut(s)	139, 311, 323, 411
MseI	TTAA	1 cut(s)	351
MspR9I	CCNGG	1 cut(s)	392
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	392
MwoI	GCNNNNNNNGC	1 cut(s)	132
NlaIII	CATG	3 cut(s)	130, 259, 454
NlaIV	GGNNCC	2 cut(s)	299, 401
NspI	RCATGY	2 cut(s)	130, 454
PfeI	GAWTC	1 cut(s)	153
PkrI	GCNGC	2 cut(s)	103, 456
PmaCI	CACGTG	1 cut(s)	138
PmlI	CACGTG	1 cut(s)	138
Ppu21I	YACGTR	1 cut(s)	138
PpuMI	RGGWCCY	1 cut(s)	399
Psp5II	RGGWCCY	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	390
PspCI	CACGTG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	2 cut(s)	299, 401
PspPI	GGNCC	1 cut(s)	399
PspPPI	RGGWCCY	1 cut(s)	399
RsaI	GTAC	2 cut(s)	11, 299
RsaNI	GTAC	2 cut(s)	10, 298
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	2 cut(s)	102, 455
Sau96I	GGNCC	1 cut(s)	399
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	3 cut(s)	137, 211, 243
SetI	ASST	8 cut(s)	15, 106, 140, 150, 299, 303, 401, 439
SfcI	CTRYAG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	399
Sse9I	AATT	4 cut(s)	115, 183, 246, 372
SspMI	CTAG	2 cut(s)	227, 438
StyD4I	CCNGG	1 cut(s)	390
TaaI	ACNGT	2 cut(s)	93, 278
TaiI	ACGT	1 cut(s)	140
TasI	AATT	4 cut(s)	115, 183, 246, 372
TfiI	GAWTC	1 cut(s)	153
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	2 cut(s)	101, 454
TspDTI	ATGAA	1 cut(s)	108
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	1 cut(s)	322
VneI	GTGCAC	2 cut(s)	133, 207
VpaK11BI	GGWCC	1 cut(s)	399
XapI	RAATTY	1 cut(s)	115
XceI	RCATGY	2 cut(s)	130, 454
XspI	CTAG	2 cut(s)	227, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.