Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008149

Physical Location & Seq

Genomic Coordinates Forward (+)

38014195 .. 38015014

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0314000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAGGAGGAGGATGAAATCGATAGAGTAACACTATGGATTGCTAGACGACAAACCAGGCAGGAAACCTTCAAGGATGAAGCAACGAAGCAGTGTGCTGACAACATTAGGAACTTGAACGAGAAGGTTGCTAGTGGAGAACTAAGTACTAATGGAAGTAATGATGTGTTAACCTTAACTTTAGGCACTCCTGAGCATGGTGGTAGAGTGCGAGGGGTAGGAGCTTGTGTGAGTCCCTCATCTTACTTTCACCTCTCTAAACGTAGAAGGCAGAGCATCCAAGAGACGATTCAGATGAGTGTGCAAAAAATACTAGAAGAGGAAAGAGATAAGATCATTGAAAAGGCAAAGCAGCAGGTAGTTAAAGAAGAGAGGGCATTTTGGGTTGATAAGCTTGCACATATAGAAGCAAAGCTAGAAGCTCGGGAGGTTGGGAAAGTAGCTAGTTCTCCAGCAGCACTAGAGAAATACATTCCACATGGATTTGGGCAAGCCAGTTGTTCACAAACCATAGGTCCAACATTTCAGGAAGCACCCAATGCTCAAGTGGAAGACGAAGTAGTGAATCTTGTGGATGGGAAATCAATTCGGGAAGCTTTAGATGTAATTGAGGAAAGGGCAGTGGGATGTAAAAATAAAGTTTCAAAGAGGAAGGAGTGTGGTGGAAAATCTATTCCCAACTCCAATAAAAAGGATGAGCTAAGCAAGTTGAGTGAGCAAAATATAGGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00140 ko00232 ko00380 ko00591 ko00830 ko00980 ko00982 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00232 map00380 map00591 map00830 map00980 map00982 map01100 map01110 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

244

Amino Acids

27.13

Weight (kDa)

6.18

Isoelectric Point (pI)

59.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008149)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g29060
rosa_chinensis	RchiOBHm_Chr2g0133931 RchiOBHm_Chr2g0134061 RchiOBHm_Chr2g0134091 RchiOBHm_Chr2g0134201
rosa_laevigata	RLG00000019370 RLG00000019371 RLG00000019376
rosa_multiflora	Rmu_sc0001782.1_g000008 Rmu_sc0001782.1_g000023 Rmu_sc0001782.1_g000028
rosa_rugosa	Rorug02G0314000 Rorug02G0314100 Rorug02G0314600
rosa_samantha	Rh2BG373400 Rh2BG373600 Rh2BG373800 Rh2CG351400 Rh2DG390200 Rh2DG390500
rosa_wichuraiana	Rw0G010730 Rw2G029880 Rw2G029910 Rw2G029930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	346
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	4 cut(s)	73, 118, 341, 645
AjnI	CCWGG	1 cut(s)	56
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AluBI	AGCT	7 cut(s)	224, 394, 415, 422, 443, 596, 700
AluI	AGCT	7 cut(s)	224, 394, 415, 422, 443, 596, 700
Alw26I	GTCTC	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	423
ApeKI	GCWGC	2 cut(s)	352, 455
ArsI	GACNNNNNNTTYG	2 cut(s)	499, 531
AspS9I	GGNCC	1 cut(s)	515
AsuHPI	GGTGA	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	423
AvaII	GGWCC	1 cut(s)	515
BbsI	GAAGAC	1 cut(s)	558
BbvI	GCAGC	2 cut(s)	364, 467
BccI	CCATC	1 cut(s)	569
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	6 cut(s)	45, 132, 314, 416, 444, 461
BfuAI	ACCTGC	1 cut(s)	346
BisI	GCNGC	2 cut(s)	353, 456
BlpI	GCTNAGC	1 cut(s)	701
BlsI	GCNGC	2 cut(s)	354, 457
BmcAI	AGTACT	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	58
Bme18I	GGWCC	1 cut(s)	515
BmeT110I	CYCGRG	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	515
BmrFI	CCNGG	1 cut(s)	58
BmsI	GCATC	1 cut(s)	285
BpiI	GAAGAC	1 cut(s)	558
BpmI	CTGGAG	1 cut(s)	435
Bpu10I	CCTNAGC	1 cut(s)	192
Bpu1102I	GCTNAGC	1 cut(s)	701
BpuEI	CTTGAG	1 cut(s)	528
Bsa29I	ATCGAT	1 cut(s)	21
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	58
BseCI	ATCGAT	1 cut(s)	21
BseGI	GGATG	6 cut(s)	19, 82, 276, 580, 632, 700
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	1 cut(s)	495
BseRI	GAGGAG	2 cut(s)	20, 23
BseXI	GCAGC	2 cut(s)	364, 467
BshVI	ATCGAT	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	423
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	278
BsmBI	CGTCTC	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	219
BsoBI	CYCGRG	1 cut(s)	423
Bsp143I	GATC	1 cut(s)	333
Bsp1720I	GCTNAGC	1 cut(s)	701
BspCNI	CTCAG	1 cut(s)	184
BspDI	ATCGAT	1 cut(s)	21
BspMI	ACCTGC	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	495
BssMI	GATC	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	58
Bst6I	CTCTTC	2 cut(s)	312, 363
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstC8I	GCNNGC	2 cut(s)	396, 492
BstDEI	CTNAG	3 cut(s)	143, 192, 701
BstF5I	GGATG	6 cut(s)	19, 82, 276, 580, 632, 700
BstKTI	GATC	1 cut(s)	336
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	1 cut(s)	333
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNI	CCWGG	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	364, 467
BstV2I	GAAGAC	1 cut(s)	558
Bsu15I	ATCGAT	1 cut(s)	21
BsuTUI	ATCGAT	1 cut(s)	21
BtsCI	GGATG	6 cut(s)	19, 82, 276, 580, 632, 700
BtsI	GCAGTG	2 cut(s)	98, 627
BtsIMutI	CAGTG	2 cut(s)	98, 627
BveI	ACCTGC	1 cut(s)	346
Cac8I	GCNNGC	2 cut(s)	396, 492
Cfr13I	GGNCC	1 cut(s)	515
ClaI	ATCGAT	1 cut(s)	21
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	2 cut(s)	197, 479
CviJI	RGCY	8 cut(s)	224, 394, 415, 422, 443, 494, 596, 700
CviKI_1	RGCY	8 cut(s)	224, 394, 415, 422, 443, 494, 596, 700
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	3 cut(s)	143, 192, 701
DpnI	GATC	1 cut(s)	335
DpnII	GATC	1 cut(s)	333
Eam1104I	CTCTTC	2 cut(s)	312, 363
EarI	CTCTTC	2 cut(s)	312, 363
Eco47I	GGWCC	1 cut(s)	515
Eco88I	CYCGRG	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	56
Esp3I	CGTCTC	1 cut(s)	278
FaeI	CATG	2 cut(s)	200, 482
FaiI	YATR	7 cut(s)	37, 198, 402, 404, 480, 512, 725
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	2 cut(s)	196, 478
Fnu4HI	GCNGC	2 cut(s)	353, 456
FokI	GGATG	6 cut(s)	26, 89, 263, 587, 639, 707
Fsp4HI	GCNGC	2 cut(s)	353, 456
FspBI	CTAG	6 cut(s)	45, 132, 314, 416, 444, 461
GluI	GCNGC	2 cut(s)	353, 456
GsuI	CTGGAG	1 cut(s)	435
Hin1II	CATG	2 cut(s)	200, 482
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HindIII	AAGCTT	2 cut(s)	392, 594
HinfI	GANTC	3 cut(s)	232, 289, 565
HpaI	GTTAAC	1 cut(s)	171
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	171, 503
Hpy188I	TCNGA	1 cut(s)	294
Hpy188III	TCNNGA	4 cut(s)	191, 425, 527, 590
Hpy8I	GTNNAC	2 cut(s)	171, 503
HpyAV	CCTTC	4 cut(s)	79, 118, 261, 646
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	2 cut(s)	304, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	3 cut(s)	143, 192, 701
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	2 cut(s)	200, 482
KspAI	GTTAAC	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	333
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	8 cut(s)	43, 47, 70, 204, 341, 465, 508, 512
Lsp1109I	GCAGC	2 cut(s)	364, 467
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	6 cut(s)	45, 132, 314, 416, 444, 461
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	335
MboI	GATC	1 cut(s)	333
MboII	GAAGA	3 cut(s)	329, 380, 563
MluCI	AATT	2 cut(s)	585, 606
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	542
MnlI	CCTC	9 cut(s)	4, 206, 247, 263, 313, 366, 421, 604, 642
MseI	TTAA	3 cut(s)	170, 176, 363
MspR9I	CCNGG	1 cut(s)	58
MvaI	CCWGG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	539
NdeII	GATC	1 cut(s)	333
NlaIII	CATG	2 cut(s)	200, 482
PfeI	GAWTC	2 cut(s)	289, 565
PkrI	GCNGC	2 cut(s)	354, 457
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	515
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SaqAI	TTAA	3 cut(s)	170, 176, 363
SatI	GCNGC	2 cut(s)	353, 456
Sau3AI	GATC	1 cut(s)	333
Sau96I	GGNCC	1 cut(s)	515
ScaI	AGTACT	1 cut(s)	148
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	58
SfaNI	GCATC	1 cut(s)	285
SinI	GGWCC	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	543
SmoI	CTYRAG	1 cut(s)	543
Sse9I	AATT	2 cut(s)	585, 606
SspMI	CTAG	6 cut(s)	45, 132, 314, 416, 444, 461
StyD4I	CCNGG	1 cut(s)	56
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	585, 606
TatI	WGTACW	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	289, 565
Tru1I	TTAA	3 cut(s)	170, 176, 363
Tru9I	TTAA	3 cut(s)	170, 176, 363
TscAI	CASTG	2 cut(s)	98, 627
TseI	GCWGC	2 cut(s)	352, 455
TspDTI	ATGAA	2 cut(s)	30, 93
TspRI	CASTG	2 cut(s)	98, 627
VpaK11BI	GGWCC	1 cut(s)	515
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XspI	CTAG	6 cut(s)	45, 132, 314, 416, 444, 461
ZrmI	AGTACT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.