RchiOBHm_Chr3g0447711
MYB Family

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0011675
Physical Location & Seq
Reverse (-)
306588 .. 309733
3146 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41517

Sequence Viewer

Length: 786 bp
ATGATATCAGAGGAGGAGGGCAACGCGAGGGTTTTGTGGTGTCTCAAGTGTAAAGAGGGTACTAGTGGAACCAACAGATTGTTGGTTTGTTGTGAGAATGGATGCCCAATTGTTATTCATGAAGAGTGTATGACGGTGCAGCCTCAGTTTGATGATATGGGTCACTTTTACTGCCCTTATTGTGCATACAAGTGGATAAGCCATTTGTGTAAGCAGAAGGAGAAAATGTTAAACCTATCCGCTCTTAAATTGACCAACTGGATTTTGAGGGCAACCGAAGGAGACAGTGAGCAGAGGAGGAGGAGGGAGGTTGACGATGATGAAGAGAATGGCGGTGTATCTGCAAGGCAGGATTTTGAGAATGTTAAAGGTGGAGAAAGACAGGAGGAAAGAGAGCCTTTGGTGGTGGAGCCTCTGCTAACAGTGAGGCTTTCTGATATACAAGGAACGTCAGATGGAGATGAAGGACTTGGCAAAAGGGTGGCCGAGGAGGAGGACAATGGAACCAGAAAGTTGCCAAAATCTTTGAGCACAAGCTTCGTATGTCTTGATAGAAGGAGAGTATTATGGACCAAGGAAGAGGAACAAGCTTTAAAGGAGGGAGTGAAAGAATTTTGGACCACAAATAGAAAGTCTATACCCTGGGAGAAAATTTGTCAGGCTTACAAAGATAGATTTCACAGTTCACGTACTGCAGCTAATCTCAAGGATAAATGGAAGTTTATGACCAAAACGGCAACAAAAAAGGGTTGTTTTGAGAAATTGCAGGTACCTGAGGTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

261

Amino Acids

30.15

Weight (kDa)

6.49

Isoelectric Point (pI)

49.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 757
Acc65I GGTACC 1 cut(s) 769
AccB1I GGYRCC 1 cut(s) 769
AccBSI CCGCTC 1 cut(s) 242
AccII CGCG 1 cut(s) 26
AciI CCGC 2 cut(s) 240, 333
AcoI YGGCCR 1 cut(s) 483
AcsI RAATTY 2 cut(s) 611, 651
AfaI GTAC 3 cut(s) 61, 691, 771
AhlI ACTAGT 1 cut(s) 62
AjnI CCWGG 1 cut(s) 641
AluBI AGCT 3 cut(s) 537, 590, 698
AluI AGCT 3 cut(s) 537, 590, 698
Alw21I GWGCWC 1 cut(s) 533
Alw26I GTCTC 2 cut(s) 47, 276
AoxI GGCC 1 cut(s) 483
ApeKI GCWGC 2 cut(s) 139, 695
ApoI RAATTY 2 cut(s) 611, 651
ArsI GACNNNNNNTTYG 2 cut(s) 617, 649
Asp718I GGTACC 1 cut(s) 769
AspS9I GGNCC 2 cut(s) 570, 618
AvaII GGWCC 2 cut(s) 570, 618
AxyI CCTNAGG 1 cut(s) 774
BanI GGYRCC 1 cut(s) 769
Bbv12I GWGCWC 1 cut(s) 533
BbvI GCAGC 2 cut(s) 151, 707
BccI CCATC 1 cut(s) 449
BceAI ACGGC 1 cut(s) 750
BcgI CGANNNNNNTGC 2 cut(s) 520, 554
BciT130I CCWGG 1 cut(s) 643
BcoDI GTCTC 2 cut(s) 47, 276
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 693
BfuAI ACCTGC 1 cut(s) 757
BisI GCNGC 2 cut(s) 140, 696
BlsI GCNGC 2 cut(s) 141, 697
Bme1390I CCNGG 1 cut(s) 643
Bme18I GGWCC 2 cut(s) 570, 618
BmgT120I GGNCC 2 cut(s) 570, 618
BmiI GGNNCC 4 cut(s) 70, 411, 505, 771
BmrFI CCNGG 1 cut(s) 643
BmsI GCATC 1 cut(s) 92
BpuEI CTTGAG 2 cut(s) 29, 689
BsaAI YACGTR 1 cut(s) 689
BsaJI CCNNGG 4 cut(s) 486, 573, 641, 642
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bse1I ACTGG 1 cut(s) 263
Bse21I CCTNAGG 1 cut(s) 774
BseBI CCWGG 1 cut(s) 643
BseDI CCNNGG 4 cut(s) 486, 573, 641, 642
BseGI GGATG 1 cut(s) 107
BseMII CTCAG 2 cut(s) 158, 765
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 7 cut(s) 26, 29, 310, 313, 316, 503, 506
BseXI GCAGC 2 cut(s) 151, 707
BsgI GTGCAG 1 cut(s) 158
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 1 cut(s) 485
BshNI GGYRCC 1 cut(s) 769
BsiHKAI GWGCWC 1 cut(s) 533
BsmAI GTCTC 2 cut(s) 47, 276
BsnI GGCC 1 cut(s) 485
Bsp1286I GDGCHC 1 cut(s) 533
BspACI CCGC 2 cut(s) 240, 333
BspANI GGCC 1 cut(s) 485
BspCNI CTCAG 2 cut(s) 157, 766
BspFNI CGCG 1 cut(s) 26
BspHI TCATGA 1 cut(s) 118
BspLI GGNNCC 4 cut(s) 70, 411, 505, 771
BspMAI CTGCAG 1 cut(s) 697
BspMI ACCTGC 1 cut(s) 757
BspT107I GGYRCC 1 cut(s) 769
BsrBI CCGCTC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 4 cut(s) 486, 573, 641, 642
BssT1I CCWWGG 1 cut(s) 573
Bst2UI CCWGG 1 cut(s) 643
Bst4CI ACNGT 4 cut(s) 136, 287, 424, 683
Bst6I CTCTTC 3 cut(s) 117, 318, 573
BstBAI YACGTR 1 cut(s) 689
BstDEI CTNAG 2 cut(s) 144, 774
BstF5I GGATG 1 cut(s) 107
BstFNI CGCG 1 cut(s) 26
BstMAI GTCTC 2 cut(s) 47, 276
BstNI CCWGG 1 cut(s) 643
BstSCI CCNGG 1 cut(s) 641
BstSFI CTRYAG 1 cut(s) 693
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 151, 707
Bsu36I CCTNAGG 1 cut(s) 774
BsuRI GGCC 1 cut(s) 485
BtsCI GGATG 1 cut(s) 107
BtsIMutI CAGTG 2 cut(s) 292, 429
BveI ACCTGC 1 cut(s) 757
CciI TCATGA 1 cut(s) 118
Cfr13I GGNCC 2 cut(s) 570, 618
Csp6I GTAC 3 cut(s) 60, 690, 770
CviAII CATG 1 cut(s) 119
CviQI GTAC 3 cut(s) 60, 690, 770
DdeI CTNAG 2 cut(s) 144, 774
DraI TTTAAA 1 cut(s) 594
EaeI YGGCCR 1 cut(s) 483
Eam1104I CTCTTC 3 cut(s) 117, 318, 573
EarI CTCTTC 3 cut(s) 117, 318, 573
Eco130I CCWWGG 1 cut(s) 573
Eco32I GATATC 1 cut(s) 6
Eco47I GGWCC 2 cut(s) 570, 618
Eco81I CCTNAGG 1 cut(s) 774
EcoRII CCWGG 1 cut(s) 641
EcoRV GATATC 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 573
ErhI CCWWGG 1 cut(s) 573
FaeI CATG 1 cut(s) 122
FaiI YATR 9 cut(s) 120, 131, 158, 187, 440, 544, 568, 638, 725
FalI AAGNNNNNCTT 2 cut(s) 382, 414
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 2 cut(s) 140, 696
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 2 cut(s) 140, 696
FspBI CTAG 1 cut(s) 63
GluI GCNGC 2 cut(s) 140, 696
HaeIII GGCC 1 cut(s) 485
Hin1II CATG 1 cut(s) 122
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HindIII AAGCTT 2 cut(s) 535, 588
Hpy166II GTNNAC 2 cut(s) 313, 686
Hpy188I TCNGA 3 cut(s) 10, 436, 454
Hpy188III TCNNGA 2 cut(s) 119, 548
Hpy8I GTNNAC 2 cut(s) 313, 686
HpyAV CCTTC 4 cut(s) 211, 272, 458, 549
HpyCH4III ACNGT 4 cut(s) 136, 287, 424, 683
HpyCH4IV ACGT 2 cut(s) 449, 688
HpyCH4V TGCA 5 cut(s) 139, 185, 344, 695, 766
HpyF3I CTNAG 2 cut(s) 144, 774
HpySE526I ACGT 2 cut(s) 449, 688
Hsp92II CATG 1 cut(s) 122
KpnI GGTACC 1 cut(s) 773
LmnI GCTCC 1 cut(s) 409
LpnPI CCDG 8 cut(s) 244, 335, 368, 520, 628, 644, 655, 752
Lsp1109I GCAGC 2 cut(s) 151, 707
LweI GCATC 1 cut(s) 92
MaeI CTAG 1 cut(s) 63
MaeII ACGT 2 cut(s) 449, 688
MaeIII GTNAC 1 cut(s) 161
MbiI CCGCTC 1 cut(s) 242
MboII GAAGA 3 cut(s) 134, 335, 590
MfeI CAATTG 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 533
MluCI AATT 5 cut(s) 108, 248, 611, 651, 761
MseI TTAA 4 cut(s) 230, 246, 366, 593
MslI CAYNNNNRTG 1 cut(s) 190
MspR9I CCNGG 1 cut(s) 643
MunI CAATTG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 643
MvnI CGCG 1 cut(s) 26
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 4 cut(s) 70, 411, 505, 771
NmeAIII GCCGAG 1 cut(s) 511
NmuCI GTSAC 1 cut(s) 161
PagI TCATGA 1 cut(s) 118
PasI CCCWGGG 1 cut(s) 642
PkrI GCNGC 2 cut(s) 141, 697
Ppu21I YACGTR 1 cut(s) 689
Psp6I CCWGG 1 cut(s) 641
PspGI CCWGG 1 cut(s) 641
PspN4I GGNNCC 4 cut(s) 70, 411, 505, 771
PspPI GGNCC 2 cut(s) 570, 618
PstI CTGCAG 1 cut(s) 697
RsaI GTAC 3 cut(s) 61, 691, 771
RsaNI GTAC 3 cut(s) 60, 690, 770
RseI CAYNNNNRTG 1 cut(s) 190
SaqAI TTAA 4 cut(s) 230, 246, 366, 593
SatI GCNGC 2 cut(s) 140, 696
Sau96I GGNCC 2 cut(s) 570, 618
ScrFI CCNGG 1 cut(s) 643
SduI GDGCHC 1 cut(s) 533
SfaNI GCATC 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 693
SinI GGWCC 2 cut(s) 570, 618
SmiMI CAYNNNNRTG 1 cut(s) 190
SmlI CTYRAG 2 cut(s) 44, 704
SmoI CTYRAG 2 cut(s) 44, 704
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 5 cut(s) 108, 248, 611, 651, 761
SsiI CCGC 2 cut(s) 240, 333
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 641
StyI CCWWGG 1 cut(s) 573
TaaI ACNGT 4 cut(s) 136, 287, 424, 683
TaiI ACGT 2 cut(s) 452, 691
TasI AATT 5 cut(s) 108, 248, 611, 651, 761
Tru1I TTAA 4 cut(s) 230, 246, 366, 593
Tru9I TTAA 4 cut(s) 230, 246, 366, 593
TscAI CASTG 2 cut(s) 292, 429
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 2 cut(s) 139, 695
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 4 cut(s) 107, 135, 336, 477
TspRI CASTG 2 cut(s) 292, 429
VpaK11BI GGWCC 2 cut(s) 570, 618
XapI RAATTY 2 cut(s) 611, 651
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.