Rroxscaffold_6G00425910
MYB Family

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011675
Physical Location & Seq
Reverse (-)
46842517 .. 46845662
3146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00425910.1

Sequence Viewer

Length: 804 bp
ATGATATCAGAGGAGGAGGGCAGTGCGAGGGTTTTGTGGTGTCTCAAGTGTAAAGAGGGTACTAGTGAAACCAACAGATTGTTGGTTTGTTGTGAGAACGGATGCCCAATTGTTATTCATGAAGAGTGTATGGCGGTGCAGCCTCAGTTTGATGATATGGGTAACTTTTACTGCCCTTATTGTGCATACAAGTGGATAAGCCATTTGTGTAAGCAGAAAGAGAAAATGTTAGACCTATCCGCTCTTAAATTGACCAACTGGCTTTTGAGGGCAACCGAAGGAGACAGTGAGCAGAGGAGGAGGGAGGTTGACGATGATGAAGAGAATGGCGGTGTATCTGCAAGGCAGGATTTTGAGAATGTTAAAGGTGGAGAAAGACAGGAGGAAAGAGAGCCTTTGGTGGTGGAGCCTCTCCTAACAGTGAGGCTTTCTGATATACAAGGAATGTCAGATGGAGATGAAGGACTTGGTAAAAGGGTGGCCAAGGAGGAGGACAATGGAACCAGAAAGTTGCCAAAATCTTTGAGCACAAGCTCTCTATCTCTTGATAGACGGAGAGTATTATGGACCAAGGAAGAGGAACAAGCTTTAAAGGAGGGAGTGAAAGAATTTTGGACCACAAATAGAAAGTCTATACCCTGGGAGAAAATTTGTGAGGCTTACAAAGATAGATTTCACAGTTCACGTACTGCAGCTAATCTCAAGGATAAATGGAAGTTTATGACCAAAACAGCAACAAAAAAGGGTAATTTGATGCCATCGCTGCGTTGTTTTGAGGAATTGCAGGTATCTGAGGTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

267

Amino Acids

30.76

Weight (kDa)

5.7

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 775
AccBSI CCGCTC 1 cut(s) 242
AciI CCGC 3 cut(s) 134, 240, 330
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 2 cut(s) 608, 648
AfaI GTAC 2 cut(s) 61, 688
AhlI ACTAGT 1 cut(s) 62
AjnI CCWGG 1 cut(s) 638
AluBI AGCT 3 cut(s) 534, 587, 695
AluI AGCT 3 cut(s) 534, 587, 695
Alw21I GWGCWC 1 cut(s) 530
Alw26I GTCTC 2 cut(s) 47, 276
AoxI GGCC 1 cut(s) 480
ApeKI GCWGC 3 cut(s) 139, 692, 763
ApoI RAATTY 2 cut(s) 608, 648
ArsI GACNNNNNNTTYG 2 cut(s) 614, 646
AspS9I GGNCC 2 cut(s) 567, 615
AvaII GGWCC 2 cut(s) 567, 615
BalI TGGCCA 1 cut(s) 482
Bbv12I GWGCWC 1 cut(s) 530
BbvI GCAGC 3 cut(s) 151, 704, 750
BccI CCATC 2 cut(s) 446, 766
BciT130I CCWGG 1 cut(s) 640
BcoDI GTCTC 2 cut(s) 47, 276
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 690
BfuAI ACCTGC 1 cut(s) 775
BisI GCNGC 3 cut(s) 140, 693, 764
BlsI GCNGC 3 cut(s) 141, 694, 765
Bme1390I CCNGG 1 cut(s) 640
Bme18I GGWCC 2 cut(s) 567, 615
BmgT120I GGNCC 2 cut(s) 567, 615
BmiI GGNNCC 2 cut(s) 408, 502
BmrFI CCNGG 1 cut(s) 640
BmsI GCATC 2 cut(s) 92, 744
BpuEI CTTGAG 2 cut(s) 29, 686
BsaAI YACGTR 1 cut(s) 686
BsaJI CCNNGG 4 cut(s) 483, 570, 638, 639
Bse1I ACTGG 1 cut(s) 263
BseBI CCWGG 1 cut(s) 640
BseDI CCNNGG 4 cut(s) 483, 570, 638, 639
BseGI GGATG 1 cut(s) 107
BseMII CTCAG 2 cut(s) 158, 783
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 5 cut(s) 26, 29, 310, 313, 503
BseXI GCAGC 3 cut(s) 151, 704, 750
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 1 cut(s) 482
BsiHKAI GWGCWC 1 cut(s) 530
BsmAI GTCTC 2 cut(s) 47, 276
BsnI GGCC 1 cut(s) 482
Bsp1286I GDGCHC 1 cut(s) 530
BspACI CCGC 3 cut(s) 134, 240, 330
BspANI GGCC 1 cut(s) 482
BspCNI CTCAG 2 cut(s) 157, 784
BspHI TCATGA 1 cut(s) 118
BspLI GGNNCC 2 cut(s) 408, 502
BspMAI CTGCAG 1 cut(s) 694
BspMI ACCTGC 1 cut(s) 775
BsrBI CCGCTC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 4 cut(s) 483, 570, 638, 639
BssT1I CCWWGG 2 cut(s) 483, 570
Bst2UI CCWGG 1 cut(s) 640
Bst4CI ACNGT 3 cut(s) 287, 421, 680
Bst6I CTCTTC 3 cut(s) 117, 315, 570
BstBAI YACGTR 1 cut(s) 686
BstDEI CTNAG 2 cut(s) 144, 792
BstF5I GGATG 1 cut(s) 107
BstMAI GTCTC 2 cut(s) 47, 276
BstMWI GCNNNNNNNGC 1 cut(s) 763
BstNI CCWGG 1 cut(s) 640
BstSCI CCNGG 1 cut(s) 638
BstSFI CTRYAG 1 cut(s) 690
BstV1I GCAGC 3 cut(s) 151, 704, 750
BsuRI GGCC 1 cut(s) 482
BtgZI GCGATG 1 cut(s) 744
BtsCI GGATG 1 cut(s) 107
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 3 cut(s) 28, 292, 426
BveI ACCTGC 1 cut(s) 775
CciI TCATGA 1 cut(s) 118
Cfr13I GGNCC 2 cut(s) 567, 615
Csp6I GTAC 2 cut(s) 60, 687
CviAII CATG 1 cut(s) 119
CviQI GTAC 2 cut(s) 60, 687
DdeI CTNAG 2 cut(s) 144, 792
DraI TTTAAA 1 cut(s) 591
EaeI YGGCCR 1 cut(s) 480
Eam1104I CTCTTC 3 cut(s) 117, 315, 570
EarI CTCTTC 3 cut(s) 117, 315, 570
Eco130I CCWWGG 2 cut(s) 483, 570
Eco32I GATATC 1 cut(s) 6
Eco47I GGWCC 2 cut(s) 567, 615
EcoRII CCWGG 1 cut(s) 638
EcoRV GATATC 1 cut(s) 6
EcoT14I CCWWGG 2 cut(s) 483, 570
ErhI CCWWGG 2 cut(s) 483, 570
FaeI CATG 1 cut(s) 122
FaiI YATR 8 cut(s) 120, 131, 158, 187, 437, 565, 635, 722
FalI AAGNNNNNCTT 2 cut(s) 379, 411
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 3 cut(s) 140, 693, 764
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 3 cut(s) 140, 693, 764
FspBI CTAG 1 cut(s) 63
GluI GCNGC 3 cut(s) 140, 693, 764
HaeIII GGCC 1 cut(s) 482
Hin1II CATG 1 cut(s) 122
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 585
Hpy166II GTNNAC 2 cut(s) 310, 683
Hpy188I TCNGA 4 cut(s) 10, 433, 451, 793
Hpy188III TCNNGA 2 cut(s) 119, 545
Hpy8I GTNNAC 2 cut(s) 310, 683
HpyAV CCTTC 2 cut(s) 272, 455
HpyCH4III ACNGT 3 cut(s) 287, 421, 680
HpyCH4IV ACGT 1 cut(s) 685
HpyCH4V TGCA 5 cut(s) 139, 185, 341, 692, 784
HpyF10VI GCNNNNNNNGC 1 cut(s) 763
HpyF3I CTNAG 2 cut(s) 144, 792
HpySE526I ACGT 1 cut(s) 685
Hsp92II CATG 1 cut(s) 122
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 7 cut(s) 244, 332, 365, 517, 625, 652, 770
Lsp1109I GCAGC 3 cut(s) 151, 704, 750
LweI GCATC 2 cut(s) 92, 744
MaeI CTAG 1 cut(s) 63
MaeII ACGT 1 cut(s) 685
MaeIII GTNAC 1 cut(s) 161
MbiI CCGCTC 1 cut(s) 242
MboII GAAGA 3 cut(s) 134, 332, 587
MfeI CAATTG 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 530
MlsI TGGCCA 1 cut(s) 482
MluCI AATT 6 cut(s) 108, 248, 608, 648, 748, 779
MluNI TGGCCA 1 cut(s) 482
Mox20I TGGCCA 1 cut(s) 482
MscI TGGCCA 1 cut(s) 482
MseI TTAA 3 cut(s) 246, 363, 590
MslI CAYNNNNRTG 1 cut(s) 190
Msp20I TGGCCA 1 cut(s) 482
MspR9I CCNGG 1 cut(s) 640
MunI CAATTG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 640
MwoI GCNNNNNNNGC 1 cut(s) 763
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 2 cut(s) 408, 502
PagI TCATGA 1 cut(s) 118
PasI CCCWGGG 1 cut(s) 639
PkrI GCNGC 3 cut(s) 141, 694, 765
Ppu21I YACGTR 1 cut(s) 686
Psp6I CCWGG 1 cut(s) 638
PspGI CCWGG 1 cut(s) 638
PspN4I GGNNCC 2 cut(s) 408, 502
PspPI GGNCC 2 cut(s) 567, 615
PstI CTGCAG 1 cut(s) 694
RsaI GTAC 2 cut(s) 61, 688
RsaNI GTAC 2 cut(s) 60, 687
RseI CAYNNNNRTG 1 cut(s) 190
SaqAI TTAA 3 cut(s) 246, 363, 590
SatI GCNGC 3 cut(s) 140, 693, 764
Sau96I GGNCC 2 cut(s) 567, 615
ScrFI CCNGG 1 cut(s) 640
SduI GDGCHC 1 cut(s) 530
SetI ASST 9 cut(s) 237, 309, 370, 536, 589, 688, 697, 789, 798
SfaNI GCATC 2 cut(s) 92, 744
SfcI CTRYAG 1 cut(s) 690
SinI GGWCC 2 cut(s) 567, 615
SmiMI CAYNNNNRTG 1 cut(s) 190
SmlI CTYRAG 2 cut(s) 44, 701
SmoI CTYRAG 2 cut(s) 44, 701
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 6 cut(s) 108, 248, 608, 648, 748, 779
SsiI CCGC 3 cut(s) 134, 240, 330
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 638
StyI CCWWGG 2 cut(s) 483, 570
TaaI ACNGT 3 cut(s) 287, 421, 680
TaiI ACGT 1 cut(s) 688
TasI AATT 6 cut(s) 108, 248, 608, 648, 748, 779
Tru1I TTAA 3 cut(s) 246, 363, 590
Tru9I TTAA 3 cut(s) 246, 363, 590
TscAI CASTG 3 cut(s) 28, 292, 426
TseI GCWGC 3 cut(s) 139, 692, 763
TspDTI ATGAA 4 cut(s) 107, 135, 333, 474
TspGWI ACGGA 2 cut(s) 114, 568
TspRI CASTG 3 cut(s) 28, 292, 426
VpaK11BI GGWCC 2 cut(s) 567, 615
XapI RAATTY 2 cut(s) 608, 648
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.