Rorug02G0604300
MYB Family

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011675
Physical Location & Seq
Forward (+)
72236220 .. 72236651
432 bp
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UTR
Exon/CDS
Intron
Rorug02G0604300.1

Sequence Viewer

Length: 324 bp
ATGAATGATGAGACCAGGAATGGAACAGGCGTCGCTGGTCAGTCAATGGAGAGGGATCCTGATGCGGGTGGTACCATGTTCCTTATTGCTGGATTACAATCAGAGGCTCCAAATTGTTGTTTTCTGTACAATCTCTTTAAAGAGAAGGAAGACCGTGCATGTGGCTTGGAGGAGGTTCCAAATTGGAAGGCAGTTGGCAGTGGCTCTGAGTATGCTGCTACCATTGTGAAACGAATGTGGAAAAAATATCAAAATGTTCGATTGTTTGTCGCAGATAGTTCGAATTCTCAATTTTTCTCTATTGACGTATGCTTTGTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

107

Amino Acids

11.85

Weight (kDa)

4.88

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 71
AccB1I GGYRCC 1 cut(s) 71
AciI CCGC 1 cut(s) 65
AclWI GGATC 2 cut(s) 50, 63
AcsI RAATTY 1 cut(s) 283
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 2 cut(s) 73, 128
AfiI CCNNNNNNNGG 1 cut(s) 65
AjnI CCWGG 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 5
AlwI GGATC 2 cut(s) 50, 63
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 283
ArsI GACNNNNNNTTYG 1 cut(s) 296
Asp718I GGTACC 1 cut(s) 71
AsuII TTCGAA 1 cut(s) 281
BamHI GGATCC 1 cut(s) 55
BanI GGYRCC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 202
BcgI CGANNNNNNTGC 2 cut(s) 261, 295
BciT130I CCWGG 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 5
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 16
BmiI GGNNCC 4 cut(s) 57, 73, 108, 177
BmrFI CCNGG 1 cut(s) 16
BmsI GCATC 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 156
Bpu14I TTCGAA 1 cut(s) 281
BsaBI GATNNNNATC 1 cut(s) 97
BsaHI GRCGYC 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 65
Bse8I GATNNNNATC 1 cut(s) 97
BseBI CCWGG 1 cut(s) 16
BseJI GATNNNNATC 1 cut(s) 97
BseLI CCNNNNNNNGG 1 cut(s) 65
BseMII CTCAG 1 cut(s) 198
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 202
BshNI GGYRCC 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 281
Bsp1407I TGTACA 1 cut(s) 126
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 199
BspLI GGNNCC 4 cut(s) 57, 73, 108, 177
BspPI GGATC 2 cut(s) 50, 63
BspT104I TTCGAA 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 71
BspTNI GGTCTC 1 cut(s) 5
BsrGI TGTACA 1 cut(s) 126
BssMI GATC 1 cut(s) 55
BssNI GRCGYC 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 155
BstACI GRCGYC 1 cut(s) 30
BstAUI TGTACA 1 cut(s) 126
BstBI TTCGAA 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 207
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 1 cut(s) 55
BstNI CCWGG 1 cut(s) 16
BstNSI RCATGY 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 205
CseI GACGC 1 cut(s) 19
Csp6I GTAC 2 cut(s) 72, 127
CviAII CATG 2 cut(s) 76, 159
CviJI RGCY 3 cut(s) 107, 165, 204
CviKI_1 RGCY 3 cut(s) 107, 165, 204
CviQI GTAC 2 cut(s) 72, 127
DdeI CTNAG 1 cut(s) 207
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
DraI TTTAAA 1 cut(s) 139
Eco31I GGTCTC 1 cut(s) 5
EcoRI GAATTC 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 14
FaeI CATG 2 cut(s) 79, 162
FaiI YATR 4 cut(s) 77, 160, 213, 310
FatI CATG 2 cut(s) 75, 158
FauI CCCGC 1 cut(s) 58
Fnu4HI GCNGC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 216
GluI GCNGC 1 cut(s) 216
HgaI GACGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 2 cut(s) 79, 162
Hpy188I TCNGA 2 cut(s) 103, 208
Hpy188III TCNNGA 1 cut(s) 59
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 2 cut(s) 139, 181
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 306
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 2 cut(s) 79, 162
KpnI GGTACC 1 cut(s) 75
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 5 cut(s) 12, 21, 28, 72, 75
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 1 cut(s) 52
MaeII ACGT 1 cut(s) 306
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 1 cut(s) 161
MflI RGATCY 1 cut(s) 55
MluCI AATT 4 cut(s) 112, 181, 283, 290
MmeI TCCRAC 1 cut(s) 298
MnlI CCTC 4 cut(s) 45, 97, 163, 166
MseI TTAA 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
NdeII GATC 1 cut(s) 55
NlaIII CATG 2 cut(s) 79, 162
NlaIV GGNNCC 4 cut(s) 57, 73, 108, 177
NspI RCATGY 1 cut(s) 162
NspV TTCGAA 1 cut(s) 281
PkrI GCNGC 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PspN4I GGNNCC 4 cut(s) 57, 73, 108, 177
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 2 cut(s) 73, 128
RsaNI GTAC 2 cut(s) 72, 127
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 16
SetI ASST 2 cut(s) 177, 309
SfaNI GCATC 1 cut(s) 52
SfuI TTCGAA 1 cut(s) 281
Sse9I AATT 4 cut(s) 112, 181, 283, 290
SsiI CCGC 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 14
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 1 cut(s) 309
TaqI TCGA 2 cut(s) 259, 281
TasI AATT 4 cut(s) 112, 181, 283, 290
TatI WGTACW 1 cut(s) 126
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 1 cut(s) 205
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 205
XapI RAATTY 1 cut(s) 283
XceI RCATGY 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.