Rorug02G0604400
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011675
Physical Location & Seq
Forward (+)
72241808 .. 72246453
4646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0604400.1

Sequence Viewer

Length: 3498 bp
ATGGCCTTCTCGTCCTTCAGCACTCGCCGCGGCGGCGGTTGGGCCCACTCGCTCCTCCCTTCCACCACCACCTCCTCCTCCTCCGCCAAATCCAAGCACACAAGAAAGCCCCGGCGGCGATTGCTCCTCCGCGACTTCCTCTTCGCCAACTTCTTCACCATCGGCCTCTCCGTCTCCCTCTTCTTCTTTTTCCTCGTCGTCCTCCGCTACGGCGTCCCGCACCCGATCACCGCCCACTTCAAGCCCACCAGGTCCCCGATCCGCTTCTCCAAGCCCCGAATCAAACCCCTCCCCCGTAGAAGGCCCGGTGGGAGCAACAACGACGCCGTTTCGGGCGCGGCCGTGGACATCACCACCAAGGAGCTTTACGACAAGATCGAATTCTCCGACGTCGACGGCGGGCCGTGGAAGCAGGGATGGAGAGTCAATTACAAAGGCGACGAGTGGGACTCTGAGAAGTTGAAGGTGATTTTGGTGCCGCACTCGCATAACGATCCGGGGTGGAAGCTCACTGTGGAGGAGTACTATGAGAGGCAGTCCAGGCATATACTCGACACCATCGTTGATACACTCTCCAAGGATACTCGGCGCAAGTTTATATGGGAAGAGATGTCTTATCTGGAAAGGTGGTGGAGAGACTCCTCGGATGATAAAAGAGAATTGTTCACCAATCTGGTAAAGAATGGTCAGCTAGAAATTGTTGGAGGTGGCTGGGTGATGAATGATGAGGCTAATTCACATTACTATGCCATAATTGAACAGATCACAGAAGGAAATTTGTGGCTGAATGAAACCGTGGGTGTTGTTCCTAAGAATTCGTGGGCAATAGATCCATTTGGTTACTCACCCACCATGGCATATCTTCTGCGCCGTATGGGTTTCGAAAATATGCTCATTCAGAGGACCCATTATGAGCTTAAGAAAGAACTTGCACTGCACAAGAATTTGGAGTATATATGGCGTCAGAGCTGGGATGTCGATGAATCTACTGATATTTTTGTCCACATGATGCCCTTTTATTCTTATGATATTCCACATACTTGTGGGCCAGAGCCAGCTATTTGTTGTCAGTTCGACTTTGCTCGTATGCGTGGCTTTATGTATGAAGTTTGTCCTTGGGGAGACCATCCAGTAGAGACTAACCAAGAAAATGTGCGGGAGCGGGCACTTCTACTGCTAGATCAATATAGGAAGAAATCAACACTGTACAGGACAAATACACTTCTTATTCCTCTTGGAGATGATTTCCGCTACGTTAGCATAGATGAAGCTGAAGCTCAGTTTAGGAATTATCAAATGTTATTTGATTATATCAATTCTAATCCCAGTTTAAATGCTGAGGCGCATTTTGGAACTTTGGAAGACTACTTTCGAACCATTCGTGAGGAGGCTGAAAGAATAAATTACTCACTTCCTGGGGAGATTGGTTCCGGTCAGGTTGGAGGTTTTCCTTCTTTGTCGGGTGACTTCTTTACTTATGCTGATAGGCAACAGGACTATTGGAGTGGTTATTATGTATCAAGGCCTTTCTTCAAGGCTGTTGATCGAGTACTAGAGCATACGCTTCGTACCACAGATATGATGATGGCTTTCCTGCTTGGGTACTGTGGGAGATCACAATGCGAAAAGTTACCCTTGGGGTTTTCTTACAAGTTGGCAGCTGCTAGAAGGAATTTAGCTCTTTTTCAGCATCATGATGGTGTAACTGGTACTGCTAAAGATCATGTTGTCCTGGATTATGGGACTCGGATGCACACATCCTTGCAGGACTTGCAGATTTTCATGTCTAAAGCTATTGAAGTGTTGCTTGGAATACGCCATGACAAATATGATAACCCTTCTCAGTTTGAGGCAGAACAGGTGAGATCTAAATATGATGTTCAGCCTGTTCATAGAGCAATCATGGCTCGTGAAGGAACCCGCCAAACAGTAGTCCTTTTTAATCCCTTGGAGCAGATAAGAGAAGAGGTTGTGATGGTTATTGTTAACCGTCCCGATGTTACTGTTCTGGACTTGAACTGGACATGTGTCCCAAGCCAAATATCGCCTGAATTGCAGCATGATAAAAGCAAAATCTTCACTGGAAGGCATCGTGTCTACTGGCAGGCTTCTGTTCCTGCTCTGGGGTTGCAGACATATTATATAACTAATGGGTTTGTTGGATGTGAAAAGGCGAAACCAGCAAAACTTAGATACTTCTCAAAGTCTAGTTCTTTCTCTTGCCCCACTCCATATCCTTGTTCGAAAGTAGAAGCTGATGTGGCTGAAATCAAGAACAGGCATCAAACACTCACTTTTGATGTCAATCATGGTTTGTTGCAGAAAATAAGCTACAAAAATGGGTCCCAAAATGTTGTGGGTGAAGAAATAGCTATGTATTCTAGCTGGGGAAGCGGAGCATACCTTTTTAAACCTAATGGTGATGCGCAGCCTATCATTACAGCCGGTGGGCAGATGGTGATCTCTGAGGGACCTTTGGTGCAGGAAGTATATTCTTATCCAAGTACACAAAGCGAGAAGAGCCCCATTTCTCATAGCACCCGTCTCTACAACGGAGATAATACTGTACAGGAGTTTCTCATTGAGAAGGAATATCATGTTGAGCTTCTCGACCAGCAGTTTAATGACAAGGAGTTGATAGTTAGATACAGAACAGATATTGACAACAAAAAAGTATTCTTTTCTGATTTAAATGGCTTTCAAATGAGCAGGAGAGAAACCTACGATAAAATCCCCCTCCAGGGCAATTACTACCCTATGCCCTCTCTTGCATTCATGCAAGGATCCAATGGTCAGCGGTTTTCTGTCCATTCCCGGCAGTCGTTGGGTGTGGCAAGCCTTAAAAATGGATGGTTGGAGATTATGCTTGACCGTCGTTTGGTAAGAGATGATGGACGTGGTCTTGGACAAGGAGTGATGGACAACCGTGCAATGAATGTAATCTTCCACATCCTTGTAGAGTCCAACATTTCTTCTGCATCAAACCCAGTTTCCAAACCATTGCTGTTAAACCCCTCTCTTCTTTCCCACCGTGTCGGTGCTGACCTGAACTATCCATTGCATTCATTCATTTCCAAGAAGCCAGAGGATTTGTCAGTGCAACCACCCCCAAGATCATTCTCACCCTTAGCTGCACCCTTACCTTGTGATCTGCATATTGTAAGTTTAAAGGTTCCTCAACCTTTAAAATTCTCAGAGCTACCACGTGAAGATTCTAGGTTTGTCCTAACATTACAGAGACGAAGTTGGGACTCTTCATATTGCCGGAAGGGCAGATCTGGTTGCACTAGGTTTACTGATGAAAGTGTGAATTTGCTCAACATGTTCCGGGAGCTCACTGTATCGAATGCGAGAGCCACTTCATTAAATCTTCTACACGAAGACATAGATATGCTTGGGTATACTGAGCAGTTTGGAGATGCTGCTCCAGAAGGGCAAGTCCTCATTTCTCCTATGGAAATACAGGCTTACAAGTTGGAGTTACAGCCACACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

1165

Amino Acids

133.73

Weight (kDa)

6.94

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_57 PF03065 143 - 307 1.4e-06 Glycosyl hydrolase family 57
Glyco_hydro_38N PF01074 155 - 493 4.6e-83 Glycosyl hydrolases family 38 N-terminal domain
Alpha-mann_mid PF09261 500 - 602 1.5e-20 Alpha mannosidase middle domain
Glyco_hydro_38C PF07748 757 - 966 4.3e-32 Glycosyl hydrolases family 38 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 393
Acc16I TGCGCA 1 cut(s) 2427
AccB1I GGYRCC 1 cut(s) 475
AccBSI CCGCTC 1 cut(s) 1162
AccI GTMKAC 3 cut(s) 393, 2097, 3401
AccII CGCG 3 cut(s) 30, 132, 338
AclWI GGATC 5 cut(s) 253, 488, 824, 2778, 2791
AcoI YGGCCR 1 cut(s) 339
AcsI RAATTY 7 cut(s) 380, 775, 814, 943, 1672, 3188, 3310
AcuI CTGAAG 1 cut(s) 1293
AcvI CACGTG 1 cut(s) 3206
AcyI GRCGYC 4 cut(s) 213, 324, 390, 961
AfaI GTAC 8 cut(s) 524, 1208, 1551, 1570, 1604, 1711, 2506, 2568
AfiI CCNNNNNNNGG 5 cut(s) 300, 2123, 2740, 2741, 2878
AflII CTTAAG 1 cut(s) 917
AflIII ACRYGT 2 cut(s) 2024, 3321
AgsI TTSAA 7 cut(s) 241, 463, 758, 1534, 1799, 2017, 2702
AjiI CACGTC 1 cut(s) 2897
AjnI CCWGG 5 cut(s) 248, 539, 1414, 1731, 2739
AjuI GAANNNNNNNTTGG 4 cut(s) 455, 487, 1791, 1823
Alw21I GWGCWC 1 cut(s) 3336
Alw26I GTCTC 6 cut(s) 178, 630, 1116, 1130, 2549, 3232
AlwI GGATC 5 cut(s) 253, 488, 824, 2778, 2791
AoxI GGCC 8 cut(s) 3, 42, 163, 302, 339, 401, 1046, 1523
ApaI GGGCCC 1 cut(s) 46
ApeKI GCWGC 6 cut(s) 1658, 1661, 2056, 2428, 3131, 3422
ApoI RAATTY 7 cut(s) 380, 775, 814, 943, 1672, 3188, 3310
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AspLEI GCGC 5 cut(s) 338, 591, 870, 1345, 2428
AspS9I GGNCC 9 cut(s) 42, 43, 252, 303, 401, 903, 1046, 2343, 2471
AsuC2I CCSGG 5 cut(s) 112, 306, 498, 2815, 3329
AsuII TTCGAA 3 cut(s) 882, 1372, 2243
AvaII GGWCC 4 cut(s) 252, 903, 2343, 2471
BaeGI GKGCMC 2 cut(s) 46, 1168
BamHI GGATCC 1 cut(s) 2783
BanI GGYRCC 1 cut(s) 475
BanII GRGCYC 3 cut(s) 46, 2525, 3336
BauI CACGAG 1 cut(s) 1908
BbrPI CACGTG 1 cut(s) 3206
BbsI GAAGAC 2 cut(s) 1368, 3387
Bbv12I GWGCWC 1 cut(s) 3336
BbvCI CCTCAGC 1 cut(s) 1338
BbvI GCAGC 6 cut(s) 1648, 1670, 2068, 2440, 3118, 3409
BceAI ACGGC 6 cut(s) 226, 311, 326, 388, 412, 855
BcgI CGANNNNNNTGC 2 cut(s) 1547, 1581
BciT130I CCWGG 5 cut(s) 250, 541, 1416, 1733, 2741
BciVI GTATCC 1 cut(s) 574
BcnI CCSGG 5 cut(s) 112, 306, 498, 2815, 3329
BcoDI GTCTC 6 cut(s) 178, 630, 1116, 1130, 2549, 3232
BfaI CTAG 8 cut(s) 692, 1178, 1553, 1665, 2208, 2382, 3216, 3288
BfrI CTTAAG 1 cut(s) 917
BfuI GTATCC 1 cut(s) 574
BglI GCCNNNNNGGC 3 cut(s) 33, 115, 3270
BglII AGATCT 2 cut(s) 1865, 3275
BmcAI AGTACT 2 cut(s) 524, 1551
Bme18I GGWCC 4 cut(s) 252, 903, 2343, 2471
BmgBI CACGTC 1 cut(s) 2897
BmgT120I GGNCC 9 cut(s) 42, 43, 252, 303, 401, 903, 1046, 2343, 2471
BmrI ACTGGG 2 cut(s) 1320, 2981
BmsI GCATC 8 cut(s) 999, 1699, 1740, 2098, 2290, 2413, 2987, 3409
BmuI ACTGGG 2 cut(s) 1320, 2981
BoxI GACNNNNGTC 1 cut(s) 2027
BpiI GAAGAC 2 cut(s) 1368, 3387
BplI GAGNNNNNCTC 2 cut(s) 434, 466
BpmI CTGGAG 2 cut(s) 2723, 3411
Bpu10I CCTNAGC 2 cut(s) 1338, 3127
Bpu14I TTCGAA 3 cut(s) 882, 1372, 2243
BpuMI CCSGG 5 cut(s) 112, 306, 498, 2815, 3329
BsaAI YACGTR 1 cut(s) 3206
BsaBI GATNNNNATC 2 cut(s) 2304, 2459
BsaHI GRCGYC 4 cut(s) 213, 324, 390, 961
BsaI GGTCTC 1 cut(s) 1116
BsaWI WCCGGW 1 cut(s) 1430
Bsc4I CCNNNNNNNGG 5 cut(s) 300, 2123, 2740, 2741, 2878
Bse118I RCCGGY 1 cut(s) 2444
Bse1I ACTGG 7 cut(s) 1130, 1326, 1711, 2024, 2086, 2105, 2987
Bse3DI GCAATG 3 cut(s) 2937, 2999, 3056
Bse8I GATNNNNATC 2 cut(s) 2304, 2459
BseBI CCWGG 5 cut(s) 250, 541, 1416, 1733, 2741
BseGI GGATG 9 cut(s) 422, 652, 979, 1126, 1755, 1757, 2168, 2855, 2949
BseJI GATNNNNATC 2 cut(s) 2304, 2459
BseLI CCNNNNNNNGG 5 cut(s) 300, 2123, 2740, 2741, 2878
BseMI GCAATG 3 cut(s) 2937, 2999, 3056
BseMII CTCAG 7 cut(s) 444, 1292, 1329, 1856, 2457, 3207, 3396
BseNI ACTGG 7 cut(s) 1130, 1326, 1711, 2024, 2086, 2105, 2987
BseRI GAGGAG 8 cut(s) 44, 64, 67, 70, 116, 533, 631, 1400
BseSI GKGCMC 2 cut(s) 46, 1168
BseX3I CGGCCG 1 cut(s) 339
BseXI GCAGC 6 cut(s) 1648, 1670, 2068, 2440, 3118, 3409
BseYI CCCAGC 3 cut(s) 711, 969, 2385
BsgI GTGCAG 3 cut(s) 920, 2501, 3117
Bsh1236I CGCG 3 cut(s) 30, 132, 338
Bsh1285I CGRYCG 1 cut(s) 342
BshFI GGCC 8 cut(s) 5, 44, 165, 304, 341, 403, 1048, 1525
BshNI GGYRCC 1 cut(s) 475
BsiEI CGRYCG 1 cut(s) 342
BsiHKAI GWGCWC 1 cut(s) 3336
BsiSI CCGG 8 cut(s) 112, 306, 497, 1431, 2445, 2815, 3265, 3328
BslFI GGGAC 9 cut(s) 200, 238, 461, 1756, 1977, 2015, 2329, 2484, 3263
BslI CCNNNNNNNGG 5 cut(s) 300, 2123, 2740, 2741, 2878
BsmAI GTCTC 6 cut(s) 178, 630, 1116, 1130, 2549, 3232
BsmBI CGTCTC 3 cut(s) 178, 2549, 3232
BsmFI GGGAC 9 cut(s) 200, 238, 461, 1756, 1977, 2015, 2329, 2484, 3263
BsmI GAATGC 3 cut(s) 2771, 3061, 3352
BsnI GGCC 8 cut(s) 5, 44, 165, 304, 341, 403, 1048, 1525
Bso31I GGTCTC 1 cut(s) 1116
Bsp119I TTCGAA 3 cut(s) 882, 1372, 2243
Bsp120I GGGCCC 1 cut(s) 42
Bsp1286I GDGCHC 4 cut(s) 46, 1168, 2525, 3336
Bsp1407I TGTACA 2 cut(s) 1206, 2566
Bsp19I CCATGG 1 cut(s) 852
BspANI GGCC 8 cut(s) 5, 44, 165, 304, 341, 403, 1048, 1525
BspCNI CTCAG 7 cut(s) 445, 1291, 1330, 1855, 2458, 3206, 3397
BspFNI CGCG 3 cut(s) 30, 132, 338
BspHI TCATGA 1 cut(s) 1693
BspPI GGATC 5 cut(s) 253, 488, 824, 2778, 2791
BspQI GCTCTTC 1 cut(s) 2513
BspT104I TTCGAA 3 cut(s) 882, 1372, 2243
BspT107I GGYRCC 1 cut(s) 475
BspTI CTTAAG 1 cut(s) 917
BspTNI GGTCTC 1 cut(s) 1116
BsrBI CCGCTC 1 cut(s) 1162
BsrDI GCAATG 3 cut(s) 2937, 2999, 3056
BsrFI RCCGGY 1 cut(s) 2444
BsrGI TGTACA 2 cut(s) 1206, 2566
BsrI ACTGG 7 cut(s) 1130, 1326, 1711, 2024, 2086, 2105, 2987
BssAI RCCGGY 1 cut(s) 2444
BssNAI GTATAC 1 cut(s) 3402
BssNI GRCGYC 4 cut(s) 213, 324, 390, 961
BssSI CACGAG 1 cut(s) 1908
BssT1I CCWWGG 6 cut(s) 357, 576, 852, 1115, 1635, 1947
Bst1107I GTATAC 1 cut(s) 3402
Bst2BI CACGAG 1 cut(s) 1908
Bst2UI CCWGG 5 cut(s) 250, 541, 1416, 1733, 2741
Bst6I CTCTTC 7 cut(s) 146, 185, 600, 1959, 2513, 3024, 3259
BstACI GRCGYC 4 cut(s) 213, 324, 390, 961
BstAFI CTTAAG 1 cut(s) 917
BstAPI GCANNNNNTGC 1 cut(s) 1771
BstAUI TGTACA 2 cut(s) 1206, 2566
BstBAI YACGTR 1 cut(s) 3206
BstBI TTCGAA 3 cut(s) 882, 1372, 2243
BstC8I GCNNGC 5 cut(s) 401, 1056, 1164, 2106, 2836
BstDSI CCRYGG 5 cut(s) 28, 342, 404, 795, 852
BstF5I GGATG 9 cut(s) 422, 652, 979, 1126, 1755, 1757, 2168, 2855, 2949
BstFNI CGCG 3 cut(s) 30, 132, 338
BstHHI GCGC 5 cut(s) 338, 591, 870, 1345, 2428
BstMAI GTCTC 6 cut(s) 178, 630, 1116, 1130, 2549, 3232
BstMCI CGRYCG 1 cut(s) 342
BstNI CCWGG 5 cut(s) 250, 541, 1416, 1733, 2741
BstNSI RCATGY 2 cut(s) 2028, 3325
BstPAI GACNNNNGTC 1 cut(s) 2027
BstSLI GKGCMC 2 cut(s) 46, 1168
BstUI CGCG 3 cut(s) 30, 132, 338
BstV1I GCAGC 6 cut(s) 1648, 1670, 2068, 2440, 3118, 3409
BstV2I GAAGAC 2 cut(s) 1368, 3387
BstX2I RGATCY 4 cut(s) 829, 1865, 2783, 3275
BstYI RGATCY 4 cut(s) 829, 1865, 2783, 3275
BstZ17I GTATAC 1 cut(s) 3402
BstZI CGGCCG 1 cut(s) 339
BsuI GTATCC 1 cut(s) 574
BsuRI GGCC 8 cut(s) 5, 44, 165, 304, 341, 403, 1048, 1525
BtgI CCRYGG 5 cut(s) 28, 342, 404, 795, 852
BtrI CACGTC 1 cut(s) 2897
BtsCI GGATG 9 cut(s) 422, 652, 979, 1126, 1755, 1757, 2168, 2855, 2949
BtsI GCAGTG 1 cut(s) 932
BtsIMutI CAGTG 6 cut(s) 510, 932, 1202, 2079, 3102, 3336
Cac8I GCNNGC 5 cut(s) 401, 1056, 1164, 2106, 2836
CciI TCATGA 1 cut(s) 1693
CfoI GCGC 5 cut(s) 338, 591, 870, 1345, 2428
Cfr10I RCCGGY 1 cut(s) 2444
Cfr13I GGNCC 9 cut(s) 42, 43, 252, 303, 401, 903, 1046, 2343, 2471
Cfr42I CCGCGG 1 cut(s) 31
CseI GACGC 3 cut(s) 202, 332, 950
CsiI ACCWGGT 1 cut(s) 248
Csp6I GTAC 8 cut(s) 523, 1207, 1550, 1569, 1603, 1710, 2505, 2567
CviQI GTAC 8 cut(s) 523, 1207, 1550, 1569, 1603, 1710, 2505, 2567
DraI TTTAAA 5 cut(s) 1332, 2410, 2691, 3168, 3186
EaeI YGGCCR 1 cut(s) 339
EagI CGGCCG 1 cut(s) 339
Eam1104I CTCTTC 7 cut(s) 146, 185, 600, 1959, 2513, 3024, 3259
EarI CTCTTC 7 cut(s) 146, 185, 600, 1959, 2513, 3024, 3259
EciI GGCGGA 1 cut(s) 73
Ecl136II GAGCTC 1 cut(s) 3334
EclXI CGGCCG 1 cut(s) 339
Eco130I CCWWGG 6 cut(s) 357, 576, 852, 1115, 1635, 1947
Eco147I AGGCCT 1 cut(s) 1525
Eco24I GRGCYC 3 cut(s) 46, 2525, 3336
Eco31I GGTCTC 1 cut(s) 1116
Eco47I GGWCC 4 cut(s) 252, 903, 2343, 2471
Eco52I CGGCCG 1 cut(s) 339
Eco53kI GAGCTC 1 cut(s) 3334
Eco57I CTGAAG 1 cut(s) 1293
Eco72I CACGTG 1 cut(s) 3206
EcoICRI GAGCTC 1 cut(s) 3334
EcoO109I RGGNCCY 4 cut(s) 252, 903, 2343, 2471
EcoRI GAATTC 2 cut(s) 380, 814
EcoRII CCWGG 5 cut(s) 248, 539, 1414, 1731, 2739
EcoT14I CCWWGG 6 cut(s) 357, 576, 852, 1115, 1635, 1947
EcoT38I GRGCYC 3 cut(s) 46, 2525, 3336
ErhI CCWWGG 6 cut(s) 357, 576, 852, 1115, 1635, 1947
Esp3I CGTCTC 3 cut(s) 178, 2549, 3232
FalI AAGNNNNNCTT 4 cut(s) 1619, 1651, 1791, 1823
FaqI GGGAC 9 cut(s) 200, 238, 461, 1756, 1977, 2015, 2329, 2484, 3263
FauI CCCGC 5 cut(s) 225, 392, 1149, 1155, 1928
FblI GTMKAC 3 cut(s) 393, 2097, 3401
FokI GGATG 9 cut(s) 429, 659, 986, 1113, 1744, 1762, 2175, 2862, 2936
FriOI GRGCYC 3 cut(s) 46, 2525, 3336
FspBI CTAG 8 cut(s) 692, 1178, 1553, 1665, 2208, 2382, 3216, 3288
FspI TGCGCA 1 cut(s) 2427
GlaI GCGC 5 cut(s) 337, 590, 869, 1344, 2427
GsaI CCCAGC 3 cut(s) 715, 973, 2389
GsuI CTGGAG 2 cut(s) 2723, 3411
HaeIII GGCC 8 cut(s) 5, 44, 165, 304, 341, 403, 1048, 1525
HapII CCGG 8 cut(s) 112, 306, 497, 1431, 2445, 2815, 3265, 3328
HgaI GACGC 3 cut(s) 202, 332, 950
HhaI GCGC 5 cut(s) 338, 591, 870, 1345, 2428
Hin1I GRCGYC 4 cut(s) 213, 324, 390, 961
Hin6I GCGC 5 cut(s) 336, 589, 868, 1343, 2426
HinP1I GCGC 5 cut(s) 336, 589, 868, 1343, 2426
HincII GTYRAC 2 cut(s) 394, 1987
HindII GTYRAC 2 cut(s) 394, 1987
HinfI GANTC 9 cut(s) 279, 423, 449, 638, 983, 1744, 2960, 3212, 3251
HpaI GTTAAC 1 cut(s) 1987
HpaII CCGG 8 cut(s) 112, 306, 497, 1431, 2445, 2815, 3265, 3328
Hpy166II GTNNAC 9 cut(s) 346, 394, 666, 1003, 1987, 2098, 2507, 3294, 3402
Hpy188I TCNGA 9 cut(s) 388, 454, 646, 900, 966, 1749, 2467, 2686, 3196
Hpy188III TCNNGA 9 cut(s) 620, 1382, 1694, 1910, 1994, 2009, 2272, 2609, 3428
Hpy8I GTNNAC 9 cut(s) 346, 394, 666, 1003, 1987, 2098, 2507, 3294, 3402
Hpy99I CGWCG 7 cut(s) 200, 326, 392, 395, 398, 443, 2877
HpyCH4IV ACGT 4 cut(s) 390, 1254, 2896, 3205
HpySE526I ACGT 4 cut(s) 390, 1254, 2896, 3205
Hsp92I GRCGYC 4 cut(s) 213, 324, 390, 961
HspAI GCGC 5 cut(s) 336, 589, 868, 1343, 2426
KflI GGGWCCC 1 cut(s) 2343
KspAI GTTAAC 1 cut(s) 1987
KspI CCGCGG 1 cut(s) 31
LguI GCTCTTC 1 cut(s) 2513
LmnI GCTCC 9 cut(s) 57, 129, 312, 361, 1159, 1951, 2396, 3331, 3430
Lsp1109I GCAGC 6 cut(s) 1648, 1670, 2068, 2440, 3118, 3409
LweI GCATC 8 cut(s) 999, 1699, 1740, 2098, 2290, 2413, 2987, 3409
MabI ACCWGGT 1 cut(s) 248
MaeI CTAG 8 cut(s) 692, 1178, 1553, 1665, 2208, 2382, 3216, 3288
MaeII ACGT 4 cut(s) 390, 1254, 2896, 3205
MaeIII GTNAC 6 cut(s) 839, 1463, 1629, 1702, 1999, 3480
MbiI CCGCTC 1 cut(s) 1162
MflI RGATCY 4 cut(s) 829, 1865, 2783, 3275
MhlI GDGCHC 4 cut(s) 46, 1168, 2525, 3336
MlyI GAGTC 6 cut(s) 432, 443, 632, 1738, 2969, 3245
MmeI TCCRAC 7 cut(s) 411, 682, 1420, 2140, 2835, 2988, 3456
MslI CAYNNNNRTG 7 cut(s) 744, 1041, 1577, 1695, 1698, 3389, 3493
MspA1I CMGCKG 3 cut(s) 30, 1661, 2797
MspCI CTTAAG 1 cut(s) 917
MspI CCGG 8 cut(s) 112, 306, 497, 1431, 2445, 2815, 3265, 3328
Mva1269I GAATGC 3 cut(s) 2771, 3061, 3352
MvaI CCWGG 5 cut(s) 250, 541, 1416, 1733, 2741
MvnI CGCG 3 cut(s) 30, 132, 338
NciI CCSGG 5 cut(s) 112, 306, 498, 2815, 3329
NcoI CCATGG 1 cut(s) 852
NmeAIII GCCGAG 1 cut(s) 565
NmuCI GTSAC 1 cut(s) 1463
NsbI TGCGCA 1 cut(s) 2427
NspI RCATGY 2 cut(s) 2028, 3325
NspV TTCGAA 3 cut(s) 882, 1372, 2243
PagI TCATGA 1 cut(s) 1693
PceI AGGCCT 1 cut(s) 1525
PciI ACATGT 2 cut(s) 2024, 3321
PciSI GCTCTTC 1 cut(s) 2513
PcsI WCGNNNNNNNCGW 5 cut(s) 168, 375, 384, 558, 1378
PctI GAATGC 3 cut(s) 2771, 3061, 3352
PfeI GAWTC 3 cut(s) 279, 983, 3212
PflFI GACNNNGTC 1 cut(s) 2898
PfoI TCCNGGA 2 cut(s) 1731, 3327
PleI GAGTC 6 cut(s) 431, 443, 632, 1738, 2968, 3245
PmaCI CACGTG 1 cut(s) 3206
PmlI CACGTG 1 cut(s) 3206
PpsI GAGTC 6 cut(s) 431, 443, 632, 1738, 2968, 3245
Ppu21I YACGTR 1 cut(s) 3206
PpuMI RGGWCCY 4 cut(s) 252, 903, 2343, 2471
PscI ACATGT 2 cut(s) 2024, 3321
PshAI GACNNNNGTC 1 cut(s) 2027
Psp124BI GAGCTC 1 cut(s) 3336
Psp5II RGGWCCY 4 cut(s) 252, 903, 2343, 2471
Psp6I CCWGG 5 cut(s) 248, 539, 1414, 1731, 2739
PspCI CACGTG 1 cut(s) 3206
PspFI CCCAGC 3 cut(s) 711, 969, 2385
PspGI CCWGG 5 cut(s) 248, 539, 1414, 1731, 2739
PspOMI GGGCCC 1 cut(s) 42
PspPI GGNCC 9 cut(s) 42, 43, 252, 303, 401, 903, 1046, 2343, 2471
PspPPI RGGWCCY 4 cut(s) 252, 903, 2343, 2471
PsuI RGATCY 4 cut(s) 829, 1865, 2783, 3275
PsyI GACNNNGTC 1 cut(s) 2898
PvuII CAGCTG 1 cut(s) 1661
RsaI GTAC 8 cut(s) 524, 1208, 1551, 1570, 1604, 1711, 2506, 2568
RsaNI GTAC 8 cut(s) 523, 1207, 1550, 1569, 1603, 1710, 2505, 2567
RseI CAYNNNNRTG 7 cut(s) 744, 1041, 1577, 1695, 1698, 3389, 3493
SacI GAGCTC 1 cut(s) 3336
SacII CCGCGG 1 cut(s) 31
SalI GTCGAC 1 cut(s) 392
SapI GCTCTTC 1 cut(s) 2513
Sau96I GGNCC 9 cut(s) 42, 43, 252, 303, 401, 903, 1046, 2343, 2471
ScaI AGTACT 2 cut(s) 524, 1551
SchI GAGTC 6 cut(s) 432, 443, 632, 1738, 2969, 3245
SduI GDGCHC 4 cut(s) 46, 1168, 2525, 3336
SexAI ACCWGGT 1 cut(s) 248
SfaNI GCATC 8 cut(s) 999, 1699, 1740, 2098, 2290, 2413, 2987, 3409
Sfr303I CCGCGG 1 cut(s) 31
SfuI TTCGAA 3 cut(s) 882, 1372, 2243
SgrBI CCGCGG 1 cut(s) 31
SgrDI CGTCGACG 1 cut(s) 392
SinI GGWCC 4 cut(s) 252, 903, 2343, 2471
SmiI ATTTAAAT 1 cut(s) 2691
SmiMI CAYNNNNRTG 7 cut(s) 744, 1041, 1577, 1695, 1698, 3389, 3493
SmlI CTYRAG 1 cut(s) 917
SmoI CTYRAG 1 cut(s) 917
SseBI AGGCCT 1 cut(s) 1525
SspMI CTAG 8 cut(s) 692, 1178, 1553, 1665, 2208, 2382, 3216, 3288
SstI GAGCTC 1 cut(s) 3336
StuI AGGCCT 1 cut(s) 1525
StyI CCWWGG 6 cut(s) 357, 576, 852, 1115, 1635, 1947
SwaI ATTTAAAT 1 cut(s) 2691
TaiI ACGT 4 cut(s) 393, 1257, 2899, 3208
TatI WGTACW 5 cut(s) 522, 1206, 1549, 2504, 2566
TauI GCSGC 6 cut(s) 30, 33, 36, 118, 341, 481
TfiI GAWTC 3 cut(s) 279, 983, 3212
TscAI CASTG 6 cut(s) 517, 939, 1209, 2086, 3102, 3343
TseFI GTSAC 1 cut(s) 1463
TseI GCWGC 6 cut(s) 1658, 1661, 2056, 2428, 3131, 3422
Tsp45I GTSAC 1 cut(s) 1463
TspGWI ACGGA 2 cut(s) 160, 2568
TspRI CASTG 6 cut(s) 517, 939, 1209, 2086, 3102, 3343
Tth111I GACNNNGTC 1 cut(s) 2898
Vha464I CTTAAG 1 cut(s) 917
VpaK11BI GGWCC 4 cut(s) 252, 903, 2343, 2471
XapI RAATTY 7 cut(s) 380, 775, 814, 943, 1672, 3188, 3310
XceI RCATGY 2 cut(s) 2028, 3325
XmiI GTMKAC 3 cut(s) 393, 2097, 3401
XspI CTAG 8 cut(s) 692, 1178, 1553, 1665, 2208, 2382, 3216, 3288
ZraI GACGTC 1 cut(s) 391
ZrmI AGTACT 2 cut(s) 524, 1551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.