Rorug02G0604200
MYB Family

PHD zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011675
Physical Location & Seq
Forward (+)
72232602 .. 72233616
1015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0604200.1

Sequence Viewer

Length: 921 bp
ATGCTAGCGCGCTACATCACCTTGAGAGGCAAGAAAGTTGAAATAAAAAGTTTGATTCCAAAATTGGTTTTGGGAGCTGACCTTGAGAAAATGTCACCTCAACCACAAGATCAGGAGAAGAGTTTTCAATACCAGCTTCCACTGCAGAAGCCGAACGAGAATATTGTGGAAGGTGATAACCCTGAACAAAGTTCTTGGGCTGATAGATTAGTCCTTAAACAACCAGCAGATTGTTCCATTGAACCTCAAGCACATGTTACCAAGAGCTCTGAGGACCCAAGCACTCCTACATGGCTAAAGGTTTTCAACAAGTGGTTTCCTGGGTTCTTACAAGGTCTGTCAAAGCATTCAAATTATGCTCTCTCTTCTCTAAAAGCTGACTTCAAGGCTAAATTTGGGTTAGAACTGGATCACTCATCTGTGGGCTACTCTAAGCTCAGTGACTTCCTGAAGCGTGTCTCCGATTTATGTACCATCGAGATTCTCCCCATATGCAAACATGGAACTCCAACTCACATGATCCTCCGTCCAACATTTTCTAGTCCTCAATGCCGCCTCCTTCCTACACTCAGAACAACTCACACTCTGTCTTTGTCTGCATTTATTGTGAATGGTGGTGATTCAAAGTGTCTTTCATCCCTCTTAAGTGGAAATGGTGGTGATTTAAAGGATCTTCAGAACCTTTCAACTGACAGCGGTAGTGATGAGAAGTGTCTCCAGGACCTTCCAACTGACAACGCTATTGATTCAAAGTGCCTTCAGGACCTTTCACTTGATTCTGGTGGTGATTCAGAGTGTATTGGAGACGAAATGTATGGCTCAAGTTTCACTAGCCATGGGGAAGAGAAATCCTCCTTTGGAATGATACTGATGTGCTTGCTGGAGAGAGTGACAATGAAGACAGTGCAATGCAGGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

306

Amino Acids

33.84

Weight (kDa)

6.0

Isoelectric Point (pI)

55.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OST-HTH PF12872 102 - 160 1e-08 OST-HTH/LOTUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 10
AciI CCGC 2 cut(s) 553, 696
AclWI GGATC 3 cut(s) 417, 514, 678
AcsI RAATTY 1 cut(s) 392
AcuI CTGAAG 3 cut(s) 470, 659, 743
AfaI GTAC 1 cut(s) 472
AflII CTTAAG 1 cut(s) 643
AflIII ACRYGT 1 cut(s) 253
AgsI TTSAA 9 cut(s) 41, 128, 242, 307, 351, 385, 624, 687, 750
AjnI CCWGG 2 cut(s) 319, 717
AluBI AGCT 5 cut(s) 77, 136, 267, 377, 436
AluI AGCT 5 cut(s) 77, 136, 267, 377, 436
Alw21I GWGCWC 1 cut(s) 269
Alw26I GTCTC 3 cut(s) 463, 719, 798
AlwI GGATC 3 cut(s) 417, 514, 678
ApoI RAATTY 1 cut(s) 392
AspLEI GCGC 2 cut(s) 10, 12
AspS9I GGNCC 3 cut(s) 274, 721, 763
AsuHPI GGTGA 6 cut(s) 10, 87, 185, 629, 671, 797
AsuNHI GCTAGC 1 cut(s) 4
AvaII GGWCC 3 cut(s) 274, 721, 763
BaeI ACNNNNGTAYC 2 cut(s) 857, 890
BanII GRGCYC 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 905
Bbv12I GWGCWC 1 cut(s) 269
BccI CCATC 1 cut(s) 482
BciT130I CCWGG 2 cut(s) 321, 719
BcoDI GTCTC 3 cut(s) 463, 719, 798
BfaI CTAG 3 cut(s) 5, 540, 831
BfmI CTRYAG 1 cut(s) 143
BfrI CTTAAG 1 cut(s) 643
BisI GCNGC 1 cut(s) 553
BlsI GCNGC 1 cut(s) 554
Bme1390I CCNGG 2 cut(s) 321, 719
Bme18I GGWCC 3 cut(s) 274, 721, 763
BmgT120I GGNCC 3 cut(s) 274, 721, 763
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 2 cut(s) 321, 719
BmtI GCTAGC 1 cut(s) 8
BpiI GAAGAC 1 cut(s) 905
BplI GAGNNNNNCTC 2 cut(s) 836, 868
BpmI CTGGAG 2 cut(s) 701, 902
BpuEI CTTGAG 4 cut(s) 43, 104, 231, 805
BsaJI CCNNGG 2 cut(s) 320, 835
Bse1I ACTGG 1 cut(s) 411
Bse3DI GCAATG 1 cut(s) 914
BseBI CCWGG 2 cut(s) 321, 719
BseDI CCNNGG 2 cut(s) 320, 835
BseGI GGATG 1 cut(s) 635
BseMI GCAATG 1 cut(s) 914
BseMII CTCAG 3 cut(s) 261, 451, 583
BseNI ACTGG 1 cut(s) 411
BsePI GCGCGC 1 cut(s) 8
Bsh1236I CGCG 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 269
BsmAI GTCTC 3 cut(s) 463, 719, 798
BsmBI CGTCTC 1 cut(s) 798
BsmI GAATGC 1 cut(s) 346
Bsp1286I GDGCHC 1 cut(s) 269
Bsp143I GATC 4 cut(s) 109, 409, 519, 670
Bsp19I CCATGG 1 cut(s) 835
BspACI CCGC 2 cut(s) 553, 696
BspCNI CTCAG 3 cut(s) 262, 450, 582
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 276
BspMAI CTGCAG 1 cut(s) 147
BspOI GCTAGC 1 cut(s) 8
BspPI GGATC 3 cut(s) 417, 514, 678
BspTI CTTAAG 1 cut(s) 643
BsrDI GCAATG 1 cut(s) 914
BsrI ACTGG 1 cut(s) 411
BssECI CCNNGG 2 cut(s) 320, 835
BssHII GCGCGC 1 cut(s) 8
BssMI GATC 4 cut(s) 109, 409, 519, 670
BssT1I CCWWGG 1 cut(s) 835
Bst2UI CCWGG 2 cut(s) 321, 719
Bst4CI ACNGT 1 cut(s) 904
Bst6I CTCTTC 3 cut(s) 113, 370, 837
BstAFI CTTAAG 1 cut(s) 643
BstC8I GCNNGC 3 cut(s) 6, 10, 878
BstDEI CTNAG 4 cut(s) 270, 432, 437, 569
BstDSI CCRYGG 1 cut(s) 835
BstF5I GGATG 1 cut(s) 635
BstFNI CGCG 1 cut(s) 10
BstHHI GCGC 2 cut(s) 10, 12
BstKTI GATC 4 cut(s) 112, 412, 522, 673
BstMAI GTCTC 3 cut(s) 463, 719, 798
BstMBI GATC 4 cut(s) 109, 409, 519, 670
BstMWI GCNNNNNNNGC 1 cut(s) 142
BstNI CCWGG 2 cut(s) 321, 719
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 2 cut(s) 319, 717
BstSFI CTRYAG 1 cut(s) 143
BstUI CGCG 1 cut(s) 10
BstV2I GAAGAC 1 cut(s) 905
BstX2I RGATCY 1 cut(s) 670
BstYI RGATCY 1 cut(s) 670
BtgI CCRYGG 1 cut(s) 835
BtsCI GGATG 1 cut(s) 635
BtsI GCAGTG 1 cut(s) 140
BtsIMutI CAGTG 3 cut(s) 140, 445, 909
Cac8I GCNNGC 3 cut(s) 6, 10, 878
CfoI GCGC 2 cut(s) 10, 12
Cfr13I GGNCC 3 cut(s) 274, 721, 763
Csp6I GTAC 1 cut(s) 471
CviAII CATG 5 cut(s) 254, 291, 500, 517, 836
CviQI GTAC 1 cut(s) 471
DdeI CTNAG 4 cut(s) 270, 432, 437, 569
DpnI GATC 4 cut(s) 111, 411, 521, 672
DpnII GATC 4 cut(s) 109, 409, 519, 670
DraI TTTAAA 1 cut(s) 666
Eam1104I CTCTTC 3 cut(s) 113, 370, 837
EarI CTCTTC 3 cut(s) 113, 370, 837
Ecl136II GAGCTC 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 835
Eco24I GRGCYC 1 cut(s) 269
Eco47I GGWCC 3 cut(s) 274, 721, 763
Eco53kI GAGCTC 1 cut(s) 267
Eco57I CTGAAG 3 cut(s) 470, 659, 743
EcoICRI GAGCTC 1 cut(s) 267
EcoO109I RGGNCCY 3 cut(s) 274, 721, 763
EcoRII CCWGG 2 cut(s) 319, 717
EcoT14I CCWWGG 1 cut(s) 835
EcoT38I GRGCYC 1 cut(s) 269
ErhI CCWWGG 1 cut(s) 835
Esp3I CGTCTC 1 cut(s) 798
FaeI CATG 5 cut(s) 257, 294, 503, 520, 839
FatI CATG 5 cut(s) 253, 290, 499, 516, 835
FauNDI CATATG 1 cut(s) 491
Fnu4HI GCNGC 1 cut(s) 553
FokI GGATG 1 cut(s) 622
FriOI GRGCYC 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 553
FspBI CTAG 3 cut(s) 5, 540, 831
GlaI GCGC 2 cut(s) 9, 11
GluI GCNGC 1 cut(s) 553
GsuI CTGGAG 2 cut(s) 701, 902
HhaI GCGC 2 cut(s) 10, 12
Hin1II CATG 5 cut(s) 257, 294, 503, 520, 839
Hin6I GCGC 2 cut(s) 8, 10
HinP1I GCGC 2 cut(s) 8, 10
HinfI GANTC 6 cut(s) 55, 481, 620, 746, 776, 788
HphI GGTGA 6 cut(s) 10, 87, 185, 629, 671, 797
Hpy188I TCNGA 5 cut(s) 271, 463, 572, 678, 793
Hpy188III TCNNGA 4 cut(s) 113, 448, 478, 761
HpyAV CCTTC 4 cut(s) 164, 569, 734, 767
HpyCH4III ACNGT 1 cut(s) 904
HpyCH4V TGCA 5 cut(s) 145, 495, 599, 907, 912
HpyF10VI GCNNNNNNNGC 1 cut(s) 142
HpyF3I CTNAG 4 cut(s) 270, 432, 437, 569
Hsp92II CATG 5 cut(s) 257, 294, 503, 520, 839
HspAI GCGC 2 cut(s) 8, 10
Kzo9I GATC 4 cut(s) 109, 409, 519, 670
LmnI GCTCC 1 cut(s) 74
MaeI CTAG 3 cut(s) 5, 540, 831
MaeIII GTNAC 4 cut(s) 93, 256, 440, 889
MalI GATC 4 cut(s) 111, 411, 521, 672
MboI GATC 4 cut(s) 109, 409, 519, 670
MboII GAAGA 5 cut(s) 130, 357, 665, 854, 910
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 3 cut(s) 62, 352, 392
MmeI TCCRAC 3 cut(s) 533, 554, 752
MnlI CCTC 9 cut(s) 20, 108, 255, 265, 533, 555, 566, 650, 862
MseI TTAA 3 cut(s) 216, 644, 665
MspA1I CMGCKG 1 cut(s) 696
MspCI CTTAAG 1 cut(s) 643
MspR9I CCNGG 2 cut(s) 321, 719
Mva1269I GAATGC 1 cut(s) 346
MvaI CCWGG 2 cut(s) 321, 719
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 142
NcoI CCATGG 1 cut(s) 835
NdeI CATATG 1 cut(s) 491
NdeII GATC 4 cut(s) 109, 409, 519, 670
NheI GCTAGC 1 cut(s) 4
NlaIII CATG 5 cut(s) 257, 294, 503, 520, 839
NlaIV GGNNCC 1 cut(s) 276
NmuCI GTSAC 3 cut(s) 93, 440, 889
NspI RCATGY 1 cut(s) 257
PauI GCGCGC 1 cut(s) 8
PciI ACATGT 1 cut(s) 253
PctI GAATGC 1 cut(s) 346
PfeI GAWTC 6 cut(s) 55, 481, 620, 746, 776, 788
PfoI TCCNGGA 1 cut(s) 717
PkrI GCNGC 1 cut(s) 554
PpuMI RGGWCCY 3 cut(s) 274, 721, 763
PscI ACATGT 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 269
Psp5II RGGWCCY 3 cut(s) 274, 721, 763
Psp6I CCWGG 2 cut(s) 319, 717
PspGI CCWGG 2 cut(s) 319, 717
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 3 cut(s) 274, 721, 763
PspPPI RGGWCCY 3 cut(s) 274, 721, 763
PstI CTGCAG 1 cut(s) 147
PsuI RGATCY 1 cut(s) 670
PteI GCGCGC 1 cut(s) 8
RsaI GTAC 1 cut(s) 472
RsaNI GTAC 1 cut(s) 471
SacI GAGCTC 1 cut(s) 269
SaqAI TTAA 3 cut(s) 216, 644, 665
SatI GCNGC 1 cut(s) 553
Sau3AI GATC 4 cut(s) 109, 409, 519, 670
Sau96I GGNCC 3 cut(s) 274, 721, 763
ScrFI CCNGG 2 cut(s) 321, 719
SduI GDGCHC 1 cut(s) 269
SfcI CTRYAG 1 cut(s) 143
SinI GGWCC 3 cut(s) 274, 721, 763
SmlI CTYRAG 5 cut(s) 22, 83, 246, 643, 820
SmoI CTYRAG 5 cut(s) 22, 83, 246, 643, 820
Sse9I AATT 3 cut(s) 62, 352, 392
SsiI CCGC 2 cut(s) 553, 696
SspI AATATT 1 cut(s) 163
SspMI CTAG 3 cut(s) 5, 540, 831
SstI GAGCTC 1 cut(s) 269
StyD4I CCNGG 2 cut(s) 319, 717
StyI CCWWGG 1 cut(s) 835
TaaI ACNGT 1 cut(s) 904
TaqI TCGA 1 cut(s) 477
TasI AATT 3 cut(s) 62, 352, 392
TauI GCSGC 1 cut(s) 555
TfiI GAWTC 6 cut(s) 55, 481, 620, 746, 776, 788
Tru1I TTAA 3 cut(s) 216, 644, 665
Tru9I TTAA 3 cut(s) 216, 644, 665
TscAI CASTG 3 cut(s) 147, 445, 909
TseFI GTSAC 3 cut(s) 93, 440, 889
Tsp45I GTSAC 3 cut(s) 93, 440, 889
TspDTI ATGAA 2 cut(s) 624, 911
TspGWI ACGGA 1 cut(s) 515
TspRI CASTG 3 cut(s) 147, 445, 909
Vha464I CTTAAG 1 cut(s) 643
VpaK11BI GGWCC 3 cut(s) 274, 721, 763
XapI RAATTY 1 cut(s) 392
XceI RCATGY 1 cut(s) 257
XspI CTAG 3 cut(s) 5, 540, 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.