Rorug02G0604600
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011675
Physical Location & Seq
Reverse (-)
72252234 .. 72255693
3460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0604600.1

Sequence Viewer

Length: 1482 bp
ATGGATGACCTTGTTCCTTCCCGTCAGCTCTTCATCGCCGGTGAATGGAGAGAACCAGTTCTGAAGAAACGGATCCCAATCGTGAACCCTGCTACTGAAGATATTGTTGGGGACTTACCAGCTGCTACTGCTGAAGATGTGGATATTGCAGTGGATGCAGCTCGCATGGCTTTCTTCAGTAATAAAGGGAAGGATTGGGCCTCTGCTTCTGGTGCTTATCGTGCTAAGTTTCTTCGTGCCATCGCTGACATGATCTTGGAGAGGAAGTCTCTACTGGCCAAACTGGAAACCATTGATACCGGGAAGCCACTAGATGAAGCAGTATCTGATATGGAAAGTTCTGCTTCCTGTTTCAAGTATTATGCAGAACTTGCAGAAGCATTGGATTTGAAGGAAAGGACTCCTGTCTCTATAAAGCAGCAATCATTTAAGACCCATGTCCTTAAGGAACCCATTGGAGTTGTTGCCCTCATTACTCCTTGGAACTACCCTCTTTTGATGGCTGCCTGGAAGGTCGCTCCTGCTCTGGCTGCCGGATGTACCACTATACTTAAGCCATCTGAGTTGGCATCTGTACAGGTGGGTCTGCCTTCTGGTGTCCTTAATGTCGTTACTGGGTTAGGCTCAGAAGTTGGTGCCCCTTTGTCATCTCATCCTCATGTCGACAAGATAGCATTTACTGGAAGTACAGCAACCGGAATCAAGGTCATGACAGCTGCAGCTCAAACTATCAAGCCTGTATCATTGGAACTTGGCGGGAAGAGTCCAATTCTTGTGTTTCAGGATGCAGACCTCGATAATGCTGCTGAATGGACTGTCTATGGCTGCTTTGCGACAAGTGGCCAAATCTGTAGTGCAACATCTCGTCTTCTCGTTCATGAAAACATTGCAGCCAAATTCTTAGAAAAGCTTATTGACTGGAGTAAGAACATCAAAATCTCTGATCCCATGGAAGAAGGTTGCAGGCTTGGTTCCGTAATAAGTAAAACACAGTACGAGAAGATATTGAATTTTATTACTACAGCAAAAGGTGAAGGTGCAACCGTTCTACACGGAGGTGGCCGTCCTCAACATCTGAATCAAGGATTTTTCATTGAACCAACAATCATTACAGATGTTGGCACCTCAATGTCAATATGGAAGGAGGAGGTTTTTGGACCTGTTTTATGTGTCAAAACATTTACTACAGAGGATGAAGCCCTTGAACTAGCAAATGACACTGATTATGGTTTGGGAGCTGCAGTGATTTCTAAGGATCCAGAAATGTGTGAACGCTTCGCCAAGGCTATTCAGTCGGGGGTTGTACGGAAAAACTGCTCACAACCCTGCTTTAATGAAGCCCCTTGGGGAGGCAAAAAGCGCAGCGGAATTGGGCGCGAATTAGGAGAATGGGGTCTGGAAAACTACTTGAGCATAAAGCAGGTGACTGAGTACACCTCTGATGAGCCGTACGGGTGGTATTCCCCTCCCAAGAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

493

Amino Acids

53.41

Weight (kDa)

5.36

Isoelectric Point (pI)

29.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 16 - 475 7.8e-157 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1411
Acc36I ACCTGC 1 cut(s) 1411
AccB1I GGYRCC 2 cut(s) 635, 1121
AccI GTMKAC 1 cut(s) 663
AccII CGCG 1 cut(s) 1377
AciI CCGC 2 cut(s) 756, 1365
AclWI GGATC 5 cut(s) 67, 80, 938, 1250, 1263
AcoI YGGCCR 3 cut(s) 276, 841, 1060
AcsI RAATTY 2 cut(s) 896, 1009
AcuI CTGAAG 4 cut(s) 83, 117, 153, 160
AfaI GTAC 7 cut(s) 541, 576, 688, 995, 1305, 1433, 1451
AfiI CCNNNNNNNGG 2 cut(s) 45, 1349
AflII CTTAAG 2 cut(s) 443, 551
AgsI TTSAA 5 cut(s) 355, 391, 1009, 1097, 1205
AjnI CCWGG 1 cut(s) 506
AjuI GAANNNNNNNTTGG 2 cut(s) 90, 122
AleI CACNNNNGTG 1 cut(s) 1056
AluBI AGCT 7 cut(s) 28, 122, 161, 716, 722, 910, 1238
AluI AGCT 7 cut(s) 28, 122, 161, 716, 722, 910, 1238
Alw26I GTCTC 2 cut(s) 273, 412
AlwI GGATC 5 cut(s) 67, 80, 938, 1250, 1263
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 4 cut(s) 198, 276, 841, 1060
ApoI RAATTY 2 cut(s) 896, 1009
Asp700I GAANNNNTTC 1 cut(s) 57
AspLEI GCGC 2 cut(s) 1362, 1377
AspS9I GGNCC 2 cut(s) 198, 1157
AsuC2I CCSGG 1 cut(s) 301
AsuHPI GGTGA 3 cut(s) 53, 1043, 1435
AvaII GGWCC 1 cut(s) 1157
BaeGI GKGCMC 1 cut(s) 640
BalI TGGCCA 2 cut(s) 278, 843
BamHI GGATCC 2 cut(s) 72, 1255
BanI GGYRCC 2 cut(s) 635, 1121
BbsI GAAGAC 1 cut(s) 860
BccI CCATC 3 cut(s) 248, 493, 565
BceAI ACGGC 2 cut(s) 1047, 1432
BcgI CGANNNNNNTGC 2 cut(s) 785, 819
BciT130I CCWGG 1 cut(s) 508
BcnI CCSGG 1 cut(s) 301
BcoDI GTCTC 2 cut(s) 273, 412
BfaI CTAG 2 cut(s) 311, 1208
BfmI CTRYAG 5 cut(s) 717, 850, 1020, 1185, 1239
BfrI CTTAAG 2 cut(s) 443, 551
BfuAI ACCTGC 1 cut(s) 1411
Bme1390I CCNGG 2 cut(s) 301, 508
Bme18I GGWCC 1 cut(s) 1157
BmgT120I GGNCC 2 cut(s) 198, 1157
BmiI GGNNCC 6 cut(s) 74, 450, 637, 973, 1123, 1257
BmrFI CCNGG 2 cut(s) 301, 508
BmrI ACTGGG 1 cut(s) 624
BmsI GCATC 3 cut(s) 145, 578, 775
BmuI ACTGGG 1 cut(s) 624
BoxI GACNNNNGTC 2 cut(s) 404, 437
BpiI GAAGAC 1 cut(s) 860
BplI GAGNNNNNCTC 4 cut(s) 253, 285, 1421, 1453
BpmI CTGGAG 1 cut(s) 940
BpuEI CTTGAG 1 cut(s) 1429
BpuMI CCSGG 1 cut(s) 301
BsaBI GATNNNNATC 1 cut(s) 77
BsaJI CCNNGG 4 cut(s) 479, 948, 1281, 1343
BsaWI WCCGGW 1 cut(s) 695
BsaXI ACNNNNNCTCC 4 cut(s) 251, 281, 1227, 1257
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 1349
Bse118I RCCGGY 1 cut(s) 38
Bse1I ACTGG 6 cut(s) 56, 279, 288, 619, 685, 923
Bse3DI GCAATG 1 cut(s) 885
Bse8I GATNNNNATC 1 cut(s) 77
BseBI CCWGG 1 cut(s) 508
BseDI CCNNGG 4 cut(s) 479, 948, 1281, 1343
BseGI GGATG 6 cut(s) 10, 160, 542, 652, 790, 1198
BseJI GATNNNNATC 1 cut(s) 77
BseLI CCNNNNNNNGG 2 cut(s) 45, 1349
BseMI GCAATG 1 cut(s) 885
BseMII CTCAG 3 cut(s) 552, 639, 1419
BseNI ACTGG 6 cut(s) 56, 279, 288, 619, 685, 923
BseRI GAGGAG 1 cut(s) 1160
BseSI GKGCMC 1 cut(s) 640
Bsh1236I CGCG 1 cut(s) 1377
BshFI GGCC 4 cut(s) 200, 278, 843, 1062
BshNI GGYRCC 2 cut(s) 635, 1121
BsiSI CCGG 4 cut(s) 39, 300, 534, 696
BsiWI CGTACG 1 cut(s) 1449
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 2 cut(s) 45, 1349
BsmAI GTCTC 2 cut(s) 273, 412
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 4 cut(s) 200, 278, 843, 1062
Bsp1286I GDGCHC 1 cut(s) 640
Bsp1407I TGTACA 1 cut(s) 574
Bsp143I GATC 4 cut(s) 72, 252, 943, 1255
Bsp19I CCATGG 1 cut(s) 948
BspACI CCGC 2 cut(s) 756, 1365
BspANI GGCC 4 cut(s) 200, 278, 843, 1062
BspCNI CTCAG 3 cut(s) 553, 638, 1420
BspFNI CGCG 1 cut(s) 1377
BspHI TCATGA 2 cut(s) 708, 877
BspLI GGNNCC 6 cut(s) 74, 450, 637, 973, 1123, 1257
BspMAI CTGCAG 2 cut(s) 721, 1243
BspMI ACCTGC 1 cut(s) 1411
BspPI GGATC 5 cut(s) 67, 80, 938, 1250, 1263
BspQI GCTCTTC 1 cut(s) 35
BspT107I GGYRCC 2 cut(s) 635, 1121
BspTI CTTAAG 2 cut(s) 443, 551
BsrDI GCAATG 1 cut(s) 885
BsrFI RCCGGY 1 cut(s) 38
BsrGI TGTACA 1 cut(s) 574
BsrI ACTGG 6 cut(s) 56, 279, 288, 619, 685, 923
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 4 cut(s) 479, 948, 1281, 1343
BssMI GATC 4 cut(s) 72, 252, 943, 1255
BssT1I CCWWGG 4 cut(s) 479, 948, 1281, 1343
Bst2UI CCWGG 1 cut(s) 508
Bst4CI ACNGT 3 cut(s) 817, 993, 1045
Bst6I CTCTTC 2 cut(s) 35, 755
BstAFI CTTAAG 2 cut(s) 443, 551
BstAPI GCANNNNNTGC 2 cut(s) 155, 371
BstAUI TGTACA 1 cut(s) 574
BstC8I GCNNGC 2 cut(s) 163, 965
BstDEI CTNAG 6 cut(s) 225, 561, 625, 901, 1251, 1428
BstDSI CCRYGG 1 cut(s) 948
BstENI CCTNNNNNAGG 1 cut(s) 1347
BstF5I GGATG 6 cut(s) 10, 160, 542, 652, 790, 1198
BstFNI CGCG 1 cut(s) 1377
BstHHI GCGC 2 cut(s) 1362, 1377
BstKTI GATC 4 cut(s) 75, 255, 946, 1258
BstMAI GTCTC 2 cut(s) 273, 412
BstMBI GATC 4 cut(s) 72, 252, 943, 1255
BstMWI GCNNNNNNNGC 8 cut(s) 128, 155, 167, 212, 221, 371, 530, 1359
BstNI CCWGG 1 cut(s) 508
BstPAI GACNNNNGTC 2 cut(s) 404, 437
BstSCI CCNGG 2 cut(s) 299, 506
BstSFI CTRYAG 5 cut(s) 717, 850, 1020, 1185, 1239
BstSLI GKGCMC 1 cut(s) 640
BstUI CGCG 1 cut(s) 1377
BstV2I GAAGAC 1 cut(s) 860
BstX2I RGATCY 2 cut(s) 72, 1255
BstYI RGATCY 2 cut(s) 72, 1255
BsuRI GGCC 4 cut(s) 200, 278, 843, 1062
BtgI CCRYGG 1 cut(s) 948
BtgZI GCGATG 2 cut(s) 19, 226
BtsCI GGATG 6 cut(s) 10, 160, 542, 652, 790, 1198
BtsI GCAGTG 2 cut(s) 156, 1248
BtsIMutI CAGTG 3 cut(s) 156, 1218, 1248
BveI ACCTGC 1 cut(s) 1411
Cac8I GCNNGC 2 cut(s) 163, 965
CaiI CAGNNNCTG 1 cut(s) 326
CciI TCATGA 2 cut(s) 708, 877
CfoI GCGC 2 cut(s) 1362, 1377
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 198, 1157
Csp6I GTAC 7 cut(s) 540, 575, 687, 994, 1304, 1432, 1450
CviAII CATG 7 cut(s) 166, 250, 437, 659, 709, 878, 949
CviQI GTAC 7 cut(s) 540, 575, 687, 994, 1304, 1432, 1450
DdeI CTNAG 6 cut(s) 225, 561, 625, 901, 1251, 1428
DpnI GATC 4 cut(s) 74, 254, 945, 1257
DpnII GATC 4 cut(s) 72, 252, 943, 1255
EaeI YGGCCR 3 cut(s) 276, 841, 1060
Eam1104I CTCTTC 2 cut(s) 35, 755
EarI CTCTTC 2 cut(s) 35, 755
Eco130I CCWWGG 4 cut(s) 479, 948, 1281, 1343
Eco47I GGWCC 1 cut(s) 1157
Eco57I CTGAAG 4 cut(s) 83, 117, 153, 160
EcoNI CCTNNNNNAGG 1 cut(s) 1347
EcoRII CCWGG 1 cut(s) 506
EcoT14I CCWWGG 4 cut(s) 479, 948, 1281, 1343
ErhI CCWWGG 4 cut(s) 479, 948, 1281, 1343
FaeI CATG 7 cut(s) 169, 253, 440, 662, 712, 881, 952
FalI AAGNNNNNCTT 2 cut(s) 328, 360
FaqI GGGAC 1 cut(s) 125
FatI CATG 7 cut(s) 165, 249, 436, 658, 708, 877, 948
FauI CCCGC 1 cut(s) 749
FblI GTMKAC 1 cut(s) 663
FokI GGATG 6 cut(s) 17, 167, 549, 639, 797, 1205
FspBI CTAG 2 cut(s) 311, 1208
GlaI GCGC 2 cut(s) 1361, 1376
GsuI CTGGAG 1 cut(s) 940
HaeIII GGCC 4 cut(s) 200, 278, 843, 1062
HapII CCGG 4 cut(s) 39, 300, 534, 696
HhaI GCGC 2 cut(s) 1362, 1377
Hin1II CATG 7 cut(s) 169, 253, 440, 662, 712, 881, 952
Hin6I GCGC 2 cut(s) 1360, 1375
HinP1I GCGC 2 cut(s) 1360, 1375
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 908
HinfI GANTC 4 cut(s) 400, 699, 763, 1078
HpaII CCGG 4 cut(s) 39, 300, 534, 696
HphI GGTGA 3 cut(s) 53, 1043, 1435
Hpy166II GTNNAC 4 cut(s) 85, 664, 1271, 1434
Hpy188I TCNGA 7 cut(s) 63, 328, 562, 628, 943, 1077, 1441
Hpy188III TCNNGA 6 cut(s) 82, 709, 782, 878, 1259, 1397
Hpy8I GTNNAC 4 cut(s) 85, 664, 1271, 1434
HpyAV CCTTC 8 cut(s) 27, 184, 385, 505, 600, 950, 1028, 1135
HpyCH4III ACNGT 3 cut(s) 817, 993, 1045
HpyF10VI GCNNNNNNNGC 8 cut(s) 128, 155, 167, 212, 221, 371, 530, 1359
HpyF3I CTNAG 6 cut(s) 225, 561, 625, 901, 1251, 1428
Hsp92II CATG 7 cut(s) 169, 253, 440, 662, 712, 881, 952
HspAI GCGC 2 cut(s) 1360, 1375
Kzo9I GATC 4 cut(s) 72, 252, 943, 1255
LguI GCTCTTC 1 cut(s) 35
LmnI GCTCC 2 cut(s) 523, 1235
LweI GCATC 3 cut(s) 145, 578, 775
MaeI CTAG 2 cut(s) 311, 1208
MaeIII GTNAC 2 cut(s) 610, 1423
MalI GATC 4 cut(s) 74, 254, 945, 1257
MboI GATC 4 cut(s) 72, 252, 943, 1255
MflI RGATCY 2 cut(s) 72, 1255
MhlI GDGCHC 1 cut(s) 640
MlsI TGGCCA 2 cut(s) 278, 843
MluCI AATT 5 cut(s) 768, 896, 1009, 1368, 1379
MluNI TGGCCA 2 cut(s) 278, 843
MlyI GAGTC 2 cut(s) 394, 772
Mox20I TGGCCA 2 cut(s) 278, 843
MroXI GAANNNNTTC 1 cut(s) 57
MscI TGGCCA 2 cut(s) 278, 843
MseI TTAA 5 cut(s) 429, 444, 552, 603, 1332
MslI CAYNNNNRTG 3 cut(s) 657, 1056, 1127
Msp20I TGGCCA 2 cut(s) 278, 843
MspA1I CMGCKG 3 cut(s) 122, 716, 1365
MspCI CTTAAG 2 cut(s) 443, 551
MspI CCGG 4 cut(s) 39, 300, 534, 696
MspR9I CCNGG 2 cut(s) 301, 508
MvaI CCWGG 1 cut(s) 508
MvnI CGCG 1 cut(s) 1377
MwoI GCNNNNNNNGC 8 cut(s) 128, 155, 167, 212, 221, 371, 530, 1359
NciI CCSGG 1 cut(s) 301
NcoI CCATGG 1 cut(s) 948
NdeII GATC 4 cut(s) 72, 252, 943, 1255
NlaIII CATG 7 cut(s) 169, 253, 440, 662, 712, 881, 952
NlaIV GGNNCC 6 cut(s) 74, 450, 637, 973, 1123, 1257
NmuCI GTSAC 1 cut(s) 1423
OliI CACNNNNGTG 1 cut(s) 1056
PagI TCATGA 2 cut(s) 708, 877
PaqCI CACCTGC 1 cut(s) 1411
PciSI GCTCTTC 1 cut(s) 35
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 699, 1078
Pfl23II CGTACG 1 cut(s) 1449
PleI GAGTC 2 cut(s) 394, 771
PpsI GAGTC 2 cut(s) 394, 771
PshAI GACNNNNGTC 2 cut(s) 404, 437
Psp6I CCWGG 1 cut(s) 506
PspGI CCWGG 1 cut(s) 506
PspLI CGTACG 1 cut(s) 1449
PspN4I GGNNCC 6 cut(s) 74, 450, 637, 973, 1123, 1257
PspPI GGNCC 2 cut(s) 198, 1157
PstI CTGCAG 2 cut(s) 721, 1243
PstNI CAGNNNCTG 1 cut(s) 326
PsuI RGATCY 2 cut(s) 72, 1255
PvuII CAGCTG 2 cut(s) 122, 716
RsaI GTAC 7 cut(s) 541, 576, 688, 995, 1305, 1433, 1451
RsaNI GTAC 7 cut(s) 540, 575, 687, 994, 1304, 1432, 1450
RseI CAYNNNNRTG 3 cut(s) 657, 1056, 1127
SalI GTCGAC 1 cut(s) 662
SapI GCTCTTC 1 cut(s) 35
SaqAI TTAA 5 cut(s) 429, 444, 552, 603, 1332
Sau3AI GATC 4 cut(s) 72, 252, 943, 1255
Sau96I GGNCC 2 cut(s) 198, 1157
SchI GAGTC 2 cut(s) 394, 772
ScrFI CCNGG 2 cut(s) 301, 508
SduI GDGCHC 1 cut(s) 640
SfaNI GCATC 3 cut(s) 145, 578, 775
SfcI CTRYAG 5 cut(s) 717, 850, 1020, 1185, 1239
SgrAI CRCCGGYG 1 cut(s) 38
SinI GGWCC 1 cut(s) 1157
SmiMI CAYNNNNRTG 3 cut(s) 657, 1056, 1127
SmlI CTYRAG 3 cut(s) 443, 551, 1408
SmoI CTYRAG 3 cut(s) 443, 551, 1408
Sse9I AATT 5 cut(s) 768, 896, 1009, 1368, 1379
SsiI CCGC 2 cut(s) 756, 1365
SspMI CTAG 2 cut(s) 311, 1208
StyD4I CCNGG 2 cut(s) 299, 506
StyI CCWWGG 4 cut(s) 479, 948, 1281, 1343
TaaI ACNGT 3 cut(s) 817, 993, 1045
TaqI TCGA 2 cut(s) 663, 795
TasI AATT 5 cut(s) 768, 896, 1009, 1368, 1379
TatI WGTACW 3 cut(s) 574, 686, 1431
TfiI GAWTC 2 cut(s) 699, 1078
Tru1I TTAA 5 cut(s) 429, 444, 552, 603, 1332
Tru9I TTAA 5 cut(s) 429, 444, 552, 603, 1332
TscAI CASTG 3 cut(s) 156, 1225, 1248
TseFI GTSAC 1 cut(s) 1423
Tsp45I GTSAC 1 cut(s) 1423
TspDTI ATGAA 7 cut(s) 22, 330, 866, 894, 1081, 1209, 1350
TspGWI ACGGA 4 cut(s) 85, 964, 1068, 1321
TspRI CASTG 3 cut(s) 156, 1225, 1248
Vha464I CTTAAG 2 cut(s) 443, 551
VpaK11BI GGWCC 1 cut(s) 1157
XagI CCTNNNNNAGG 1 cut(s) 1347
XapI RAATTY 2 cut(s) 896, 1009
XmiI GTMKAC 1 cut(s) 663
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 2 cut(s) 311, 1208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.