RLG00000025976

Thioredoxin

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
49589675 .. 49593970
4296 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025976

Sequence Viewer

Length: 1410 bp
ATGGCTCTTCTCCAGTCTGCCACTCTCCCTCCTCTTCGCTCCATTTGCTGCTCCACTTCGTCGAAACATCCTATCACTTACCCTTCTTCCATTTCAAGCTCAGGCTCAAGCTCAAGCTCAAGCTCAAGCTCCAGCTCAAGCTCAAGCTGGGCTCCCAACAAGAAGAATGCTGCCCTTGTGGGCTTGGTGAGGCGGAAGACGGCCTTTGCGGTCAGGTCTAGCTTGGACACTGCCGCCACCGTCGGCCAGGTCACCGAGGTCGACAAGGACACCTTCTGGCCAATCGTCAATGCCGCCGGCGACAAGACCGTCGTCCTTGACATGTACACCCAATGCACAAACGCAAGCCAGGCACAGGCAGTAGTTGAATTCAGAGGTCTAGCCGATGGAATCCTTTTACAGCCATTGGCAAAGGAGCTTGGAATAAGGGTGGTACCGACTTTCAAGATTTTGAAGCATGACAAGGTTGTAAAAGAAGTGACAGGGGCCAAATTTGATGATTTAGTTGCTGCCATAGAGACTTCTCGTAGAAAGGTCGAAGCTGGGTCTCGGAATTGTGCGATTTCTCTCATCTACACCATCAGCAGGGACTGTGTAATTTTGCTCTCAGTTGGATTGGTTAGAATGATATCAGAGGAGGAGGGCAACGCGAGGGTTTTGTGGTGTCTCAAGTGTAAAGAGGGTACTAGTGAAACCAACAGATTGTTGGTTTGTTGTGAGAACGGATGCCCAATTGTTATTCATGAAGAGTGTATGACGGTGCAGCCTCAGTTTGATGATATGGGTCACTTTTACTGCCCTTATTGTGCATACAAGTGGATAAGCCATTTGTGTATGCAGAAAGAGAAAATGTTAAACCTATCCGCTCTTAAATTGACCAACTGGATTTTGAGGGCAACCGAAGGAGACAGTGAGCAGAGGAGGAGGAGGGAGGTTGAAGATGATGAAGAGAATGGCGGTGTATCTGCAAGGCAGGATTTTGAGAATGTTAAAGGTGGAGAAAGACAGGAGGAAAGAGAGCCTTTGGTGGCGGAGCCTCTCCTAACAGTGAGGCTTTCTGATAGACAAGGAATGCCAGATGGAGATGAAGGACTTGGCAAAAGGGTGGCCGAGGAGGAGGACAATGGAACCAGAAAGTTGCCAAAATCTTTGAGCACAAGCTTCGTATGTCTTGATAGAAGGAGAGTATTATGGACCAAGGAAGAGGAACAAGCTTTAAAGGAGGGAGTGAAAGAATTTTGGACCACAAATAGAAAGTCTATACCCTGGGAGAAAATTTGTCAGGCTTACAAAGATAGATTTCACAGTTCACGTACTGCAGCTAACCTCAAGGATAAATGGAAGTTTATGACCAAAATGGCAACAAAAAAAGGTTGTTTTGAGGAATTGCAGGTATCTGAGGTGAAGTAG

Protein Analysis

470

Amino Acids

52.35

Weight (kDa)

8.22

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
Acc36I ACCTGC 1 cut(s) 1381
Acc65I GGTACC 1 cut(s) 433
AccB1I GGYRCC 1 cut(s) 433
AccBSI CCGCTC 1 cut(s) 866
AccI GTMKAC 1 cut(s) 261
AccII CGCG 1 cut(s) 650
AciI CCGC 7 cut(s) 193, 209, 234, 294, 864, 957, 1031
AcoI YGGCCR 3 cut(s) 244, 278, 1107
AcsI RAATTY 4 cut(s) 368, 491, 1235, 1275
AfaI GTAC 4 cut(s) 326, 435, 685, 1315
AfiI CCNNNNNNNGG 2 cut(s) 355, 585
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 5 cut(s) 96, 368, 445, 454, 938
AhlI ACTAGT 1 cut(s) 686
AjnI CCWGG 3 cut(s) 246, 348, 1265
Alw21I GWGCWC 1 cut(s) 1157
Alw26I GTCTC 4 cut(s) 512, 552, 671, 900
AlwNI CAGNNNCTG 1 cut(s) 591
AoxI GGCC 5 cut(s) 201, 244, 278, 486, 1107
ApeKI GCWGC 5 cut(s) 48, 170, 509, 763, 1319
ApoI RAATTY 4 cut(s) 368, 491, 1235, 1275
ArsI GACNNNNNNTTYG 2 cut(s) 1241, 1273
Asp718I GGTACC 1 cut(s) 433
AspS9I GGNCC 3 cut(s) 486, 1194, 1242
AsuHPI GGTGA 2 cut(s) 199, 244
AvaII GGWCC 2 cut(s) 1194, 1242
BalI TGGCCA 1 cut(s) 280
BanI GGYRCC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 154
BbsI GAAGAC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 1157
BbvI GCAGC 5 cut(s) 35, 157, 496, 775, 1331
BccI CCATC 3 cut(s) 380, 587, 1073
BceAI ACGGC 1 cut(s) 216
BcgI CGANNNNNNTGC 2 cut(s) 1144, 1178
BciT130I CCWGG 3 cut(s) 248, 350, 1267
BcoDI GTCTC 4 cut(s) 512, 552, 671, 900
BcuI ACTAGT 1 cut(s) 686
BfaI CTAG 3 cut(s) 219, 380, 687
BfmI CTRYAG 1 cut(s) 1317
BfuAI ACCTGC 1 cut(s) 1381
BisI GCNGC 7 cut(s) 49, 171, 234, 294, 510, 764, 1320
BlsI GCNGC 7 cut(s) 50, 172, 235, 295, 511, 765, 1321
Bme1390I CCNGG 3 cut(s) 248, 350, 1267
Bme18I GGWCC 2 cut(s) 1194, 1242
BmgT120I GGNCC 3 cut(s) 486, 1194, 1242
BmiI GGNNCC 5 cut(s) 153, 435, 487, 1035, 1129
BmrFI CCNGG 3 cut(s) 248, 350, 1267
BmsI GCATC 1 cut(s) 716
BoxI GACNNNNGTC 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 203
BpmI CTGGAG 1 cut(s) 115
Bpu10I CCTNAGC 1 cut(s) 100
BpuEI CTTGAG 8 cut(s) 91, 97, 103, 109, 121, 127, 653, 1313
BsaAI YACGTR 1 cut(s) 1313
BsaI GGTCTC 1 cut(s) 552
BsaJI CCNNGG 5 cut(s) 255, 1110, 1197, 1265, 1266
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 2 cut(s) 355, 585
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 2 cut(s) 13, 887
BseBI CCWGG 3 cut(s) 248, 350, 1267
BseDI CCNNGG 5 cut(s) 255, 1110, 1197, 1265, 1266
BseGI GGATG 2 cut(s) 67, 731
BseLI CCNNNNNNNGG 2 cut(s) 355, 585
BseMII CTCAG 4 cut(s) 114, 621, 782, 1389
BseNI ACTGG 2 cut(s) 13, 887
BseRI GAGGAG 8 cut(s) 21, 650, 653, 934, 937, 940, 1127, 1130
BseXI GCAGC 5 cut(s) 35, 157, 496, 775, 1331
BseYI CCCAGC 2 cut(s) 147, 542
BsgI GTGCAG 1 cut(s) 782
Bsh1236I CGCG 1 cut(s) 650
BshFI GGCC 5 cut(s) 203, 246, 280, 488, 1109
BshNI GGYRCC 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 1157
BsiSI CCGG 1 cut(s) 297
BslFI GGGAC 1 cut(s) 602
BslI CCNNNNNNNGG 2 cut(s) 355, 585
BsmAI GTCTC 4 cut(s) 512, 552, 671, 900
BsmFI GGGAC 1 cut(s) 602
BsmI GAATGC 2 cut(s) 172, 1077
BsnI GGCC 5 cut(s) 203, 246, 280, 488, 1109
Bso31I GGTCTC 1 cut(s) 552
Bsp1286I GDGCHC 2 cut(s) 154, 1157
Bsp1407I TGTACA 1 cut(s) 324
BspACI CCGC 7 cut(s) 193, 209, 234, 294, 864, 957, 1031
BspANI GGCC 5 cut(s) 203, 246, 280, 488, 1109
BspCNI CTCAG 4 cut(s) 113, 620, 781, 1390
BspFNI CGCG 1 cut(s) 650
BspHI TCATGA 1 cut(s) 742
BspLI GGNNCC 5 cut(s) 153, 435, 487, 1035, 1129
BspMAI CTGCAG 1 cut(s) 1321
BspMI ACCTGC 1 cut(s) 1381
BspQI GCTCTTC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 433
BspTNI GGTCTC 1 cut(s) 552
BsrBI CCGCTC 1 cut(s) 866
BsrFI RCCGGY 1 cut(s) 296
BsrGI TGTACA 1 cut(s) 324
BsrI ACTGG 2 cut(s) 13, 887
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 5 cut(s) 255, 1110, 1197, 1265, 1266
BssT1I CCWWGG 1 cut(s) 1197
Bst2UI CCWGG 3 cut(s) 248, 350, 1267
Bst4CI ACNGT 7 cut(s) 241, 310, 593, 760, 911, 1048, 1307
Bst6I CTCTTC 5 cut(s) 12, 39, 741, 942, 1197
BstAUI TGTACA 1 cut(s) 324
BstBAI YACGTR 1 cut(s) 1313
BstC8I GCNNGC 2 cut(s) 298, 346
BstDEI CTNAG 4 cut(s) 100, 607, 768, 1398
BstEII GGTNACC 1 cut(s) 250
BstF5I GGATG 2 cut(s) 67, 731
BstFNI CGCG 1 cut(s) 650
BstMAI GTCTC 4 cut(s) 512, 552, 671, 900
BstMWI GCNNNNNNNGC 2 cut(s) 45, 350
BstNI CCWGG 3 cut(s) 248, 350, 1267
BstNSI RCATGY 1 cut(s) 325
BstPAI GACNNNNGTC 1 cut(s) 311
BstPI GGTNACC 1 cut(s) 250
BstSCI CCNGG 3 cut(s) 246, 348, 1265
BstSFI CTRYAG 1 cut(s) 1317
BstUI CGCG 1 cut(s) 650
BstV1I GCAGC 5 cut(s) 35, 157, 496, 775, 1331
BstV2I GAAGAC 1 cut(s) 203
BsuRI GGCC 5 cut(s) 203, 246, 280, 488, 1109
BtsCI GGATG 2 cut(s) 67, 731
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 3 cut(s) 228, 916, 1053
BveI ACCTGC 1 cut(s) 1381
Cac8I GCNNGC 2 cut(s) 298, 346
CaiI CAGNNNCTG 1 cut(s) 591
CciI TCATGA 1 cut(s) 742
Cfr10I RCCGGY 1 cut(s) 296
Cfr13I GGNCC 3 cut(s) 486, 1194, 1242
Csp6I GTAC 4 cut(s) 325, 434, 684, 1314
CviAII CATG 3 cut(s) 322, 458, 743
CviQI GTAC 4 cut(s) 325, 434, 684, 1314
DdeI CTNAG 4 cut(s) 100, 607, 768, 1398
DraI TTTAAA 1 cut(s) 1218
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
EaeI YGGCCR 3 cut(s) 244, 278, 1107
Eam1104I CTCTTC 5 cut(s) 12, 39, 741, 942, 1197
EarI CTCTTC 5 cut(s) 12, 39, 741, 942, 1197
EciI GGCGGA 2 cut(s) 208, 1046
Eco130I CCWWGG 1 cut(s) 1197
Eco24I GRGCYC 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 552
Eco32I GATATC 1 cut(s) 630
Eco47I GGWCC 2 cut(s) 1194, 1242
Eco91I GGTNACC 1 cut(s) 250
EcoO65I GGTNACC 1 cut(s) 250
EcoRI GAATTC 1 cut(s) 368
EcoRII CCWGG 3 cut(s) 246, 348, 1265
EcoRV GATATC 1 cut(s) 630
EcoT14I CCWWGG 1 cut(s) 1197
EcoT38I GRGCYC 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 1197
FaeI CATG 3 cut(s) 325, 461, 746
FalI AAGNNNNNCTT 6 cut(s) 188, 220, 257, 289, 1006, 1038
FaqI GGGAC 1 cut(s) 602
FatI CATG 3 cut(s) 321, 457, 742
FblI GTMKAC 1 cut(s) 261
Fnu4HI GCNGC 7 cut(s) 49, 171, 234, 294, 510, 764, 1320
FokI GGATG 2 cut(s) 54, 738
FriOI GRGCYC 1 cut(s) 154
Fsp4HI GCNGC 7 cut(s) 49, 171, 234, 294, 510, 764, 1320
FspBI CTAG 3 cut(s) 219, 380, 687
GluI GCNGC 7 cut(s) 49, 171, 234, 294, 510, 764, 1320
GsaI CCCAGC 2 cut(s) 151, 546
GsuI CTGGAG 1 cut(s) 115
HaeIII GGCC 5 cut(s) 203, 246, 280, 488, 1109
HapII CCGG 1 cut(s) 297
Hin1II CATG 3 cut(s) 325, 461, 746
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HindIII AAGCTT 2 cut(s) 1159, 1212
HinfI GANTC 1 cut(s) 390
HpaII CCGG 1 cut(s) 297
HphI GGTGA 2 cut(s) 199, 244
Hpy166II GTNNAC 3 cut(s) 262, 327, 1310
Hpy188I TCNGA 5 cut(s) 374, 552, 634, 1060, 1399
Hpy188III TCNNGA 3 cut(s) 445, 743, 1172
Hpy8I GTNNAC 3 cut(s) 262, 327, 1310
Hpy99I CGWCG 3 cut(s) 64, 245, 314
HpyAV CCTTC 5 cut(s) 93, 283, 896, 1082, 1173
HpyCH4III ACNGT 7 cut(s) 241, 310, 593, 760, 911, 1048, 1307
HpyCH4IV ACGT 1 cut(s) 1312
HpyCH4V TGCA 7 cut(s) 336, 763, 809, 838, 968, 1319, 1390
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 350
HpyF3I CTNAG 4 cut(s) 100, 607, 768, 1398
HpySE526I ACGT 1 cut(s) 1312
Hsp92II CATG 3 cut(s) 325, 461, 746
KpnI GGTACC 1 cut(s) 437
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 6 cut(s) 44, 56, 134, 157, 415, 1033
Lsp1109I GCAGC 5 cut(s) 35, 157, 496, 775, 1331
LweI GCATC 1 cut(s) 716
MaeI CTAG 3 cut(s) 219, 380, 687
MaeII ACGT 1 cut(s) 1312
MaeIII GTNAC 3 cut(s) 250, 478, 785
MbiI CCGCTC 1 cut(s) 866
MboII GAAGA 8 cut(s) 26, 78, 175, 208, 758, 950, 959, 1214
MfeI CAATTG 1 cut(s) 732
MhlI GDGCHC 2 cut(s) 154, 1157
MlsI TGGCCA 1 cut(s) 280
MluCI AATT 9 cut(s) 368, 491, 553, 597, 732, 872, 1235, 1275, 1385
MluNI TGGCCA 1 cut(s) 280
MmeI TCCRAC 1 cut(s) 592
Mox20I TGGCCA 1 cut(s) 280
MreI CGCCGGCG 1 cut(s) 296
MroNI GCCGGC 1 cut(s) 296
MscI TGGCCA 1 cut(s) 280
MseI TTAA 4 cut(s) 854, 870, 990, 1217
MslI CAYNNNNRTG 1 cut(s) 814
Msp20I TGGCCA 1 cut(s) 280
MspI CCGG 1 cut(s) 297
MspR9I CCNGG 3 cut(s) 248, 350, 1267
MunI CAATTG 1 cut(s) 732
Mva1269I GAATGC 2 cut(s) 172, 1077
MvaI CCWGG 3 cut(s) 248, 350, 1267
MvnI CGCG 1 cut(s) 650
MwoI GCNNNNNNNGC 2 cut(s) 45, 350
NaeI GCCGGC 1 cut(s) 298
NgoMIV GCCGGC 1 cut(s) 296
NlaIII CATG 3 cut(s) 325, 461, 746
NlaIV GGNNCC 5 cut(s) 153, 435, 487, 1035, 1129
NmeAIII GCCGAG 1 cut(s) 1135
NmuCI GTSAC 3 cut(s) 250, 478, 785
NspI RCATGY 1 cut(s) 325
PagI TCATGA 1 cut(s) 742
PasI CCCWGGG 1 cut(s) 1266
PciI ACATGT 1 cut(s) 321
PciSI GCTCTTC 1 cut(s) 12
PctI GAATGC 2 cut(s) 172, 1077
PdiI GCCGGC 1 cut(s) 298
PfeI GAWTC 1 cut(s) 390
PkrI GCNGC 7 cut(s) 50, 172, 235, 295, 511, 765, 1321
Ppu21I YACGTR 1 cut(s) 1313
PscI ACATGT 1 cut(s) 321
PshAI GACNNNNGTC 1 cut(s) 311
Psp6I CCWGG 3 cut(s) 246, 348, 1265
PspEI GGTNACC 1 cut(s) 250
PspFI CCCAGC 2 cut(s) 147, 542
PspGI CCWGG 3 cut(s) 246, 348, 1265
PspN4I GGNNCC 5 cut(s) 153, 435, 487, 1035, 1129
PspPI GGNCC 3 cut(s) 486, 1194, 1242
PstI CTGCAG 1 cut(s) 1321
PstNI CAGNNNCTG 1 cut(s) 591
RsaI GTAC 4 cut(s) 326, 435, 685, 1315
RsaNI GTAC 4 cut(s) 325, 434, 684, 1314
RseI CAYNNNNRTG 1 cut(s) 814
SalI GTCGAC 1 cut(s) 260
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 4 cut(s) 854, 870, 990, 1217
SatI GCNGC 7 cut(s) 49, 171, 234, 294, 510, 764, 1320
Sau96I GGNCC 3 cut(s) 486, 1194, 1242
ScrFI CCNGG 3 cut(s) 248, 350, 1267
SduI GDGCHC 2 cut(s) 154, 1157
SfaNI GCATC 1 cut(s) 716
SfcI CTRYAG 1 cut(s) 1317
SgrAI CRCCGGYG 1 cut(s) 296
SinI GGWCC 2 cut(s) 1194, 1242
SmiMI CAYNNNNRTG 1 cut(s) 814
SmlI CTYRAG 8 cut(s) 106, 112, 118, 124, 136, 142, 668, 1328
SmoI CTYRAG 8 cut(s) 106, 112, 118, 124, 136, 142, 668, 1328
SpeI ACTAGT 1 cut(s) 686
Sse9I AATT 9 cut(s) 368, 491, 553, 597, 732, 872, 1235, 1275, 1385
SsiI CCGC 7 cut(s) 193, 209, 234, 294, 864, 957, 1031
SspMI CTAG 3 cut(s) 219, 380, 687
StyD4I CCNGG 3 cut(s) 246, 348, 1265
StyI CCWWGG 1 cut(s) 1197
TaaI ACNGT 7 cut(s) 241, 310, 593, 760, 911, 1048, 1307
TaiI ACGT 1 cut(s) 1315
TaqI TCGA 3 cut(s) 62, 261, 537
TasI AATT 9 cut(s) 368, 491, 553, 597, 732, 872, 1235, 1275, 1385
TatI WGTACW 1 cut(s) 324
TauI GCSGC 2 cut(s) 236, 296
TfiI GAWTC 1 cut(s) 390
Tru1I TTAA 4 cut(s) 854, 870, 990, 1217
Tru9I TTAA 4 cut(s) 854, 870, 990, 1217
TscAI CASTG 3 cut(s) 235, 916, 1053
TseFI GTSAC 3 cut(s) 250, 478, 785
TseI GCWGC 5 cut(s) 48, 170, 509, 763, 1319
Tsp45I GTSAC 3 cut(s) 250, 478, 785
TspDTI ATGAA 4 cut(s) 731, 759, 960, 1101
TspGWI ACGGA 1 cut(s) 738
TspRI CASTG 3 cut(s) 235, 916, 1053
VpaK11BI GGWCC 2 cut(s) 1194, 1242
XapI RAATTY 4 cut(s) 368, 491, 1235, 1275
XceI RCATGY 1 cut(s) 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 703
XmiI GTMKAC 1 cut(s) 261
XspI CTAG 3 cut(s) 219, 380, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.