Rh3BG004000
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011675
Physical Location & Seq
Reverse (-)
342656 .. 343213
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG004000.1

Sequence Viewer

Length: 558 bp
ATGATCTCAGAGGAGGAGGGCAACGCGAGGGTTTTGTGGTGTCTCAAGTGTAAAGAGGGTACTAGTGAAACCAACAGATTGTTGGTTTGTTGTGAGAATGGATGCCCAATTGTTATTCATGAAGAGTGTATGACGGTGCAGCCTCAGTTTGATGATATGGGTCACTTTTACTGCCCTTATTGTGCATACAAGTGGATAAGCCATTTGTGTAAGCAGAAAGAGAAAATGTTAAACCTATCCGCTCTTAAATTGACCAACTGGATTTTGAGGGCAACCGAAGGAGTCAGTGAGCAGAGGAGGAGGGAGGTTGACGATGATGAAGAGAATGGCGGTGTATCTGCAAGGCAGGATTTTGAGAATGTTAAAGGTGGAGAAAGACAGGAGGAAAGAGAGCCTTTGGTGGTGGAGCCTCTGCTAACAGTGAGGCTTTCTGATATACAAGGAACGTCAGATGGAGATGAAGGACTTGGCAAAAGGGTGGCCGAGGAGGAGGACAATGGAACCAGAAAGTTGCCAAAATCTTTGAGGTCGTTTCTGAGTTATATAATCAGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

185

Amino Acids

21.12

Weight (kDa)

4.92

Isoelectric Point (pI)

54.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 242
AccII CGCG 1 cut(s) 26
AciI CCGC 2 cut(s) 240, 330
AcoI YGGCCR 1 cut(s) 480
AfaI GTAC 1 cut(s) 61
AhlI ACTAGT 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 47
AoxI GGCC 1 cut(s) 480
ApeKI GCWGC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 151
BccI CCATC 1 cut(s) 446
BcoDI GTCTC 1 cut(s) 47
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 1 cut(s) 63
BisI GCNGC 1 cut(s) 140
BlsI GCNGC 1 cut(s) 141
BmiI GGNNCC 2 cut(s) 408, 502
BmsI GCATC 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 483
Bse1I ACTGG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 483
BseGI GGATG 1 cut(s) 107
BseMII CTCAG 3 cut(s) 21, 158, 527
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 6 cut(s) 26, 29, 310, 313, 500, 503
BseXI GCAGC 1 cut(s) 151
BsgI GTGCAG 1 cut(s) 158
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 1 cut(s) 482
BsmAI GTCTC 1 cut(s) 47
BsnI GGCC 1 cut(s) 482
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 2 cut(s) 240, 330
BspANI GGCC 1 cut(s) 482
BspCNI CTCAG 3 cut(s) 20, 157, 528
BspFNI CGCG 1 cut(s) 26
BspHI TCATGA 1 cut(s) 118
BspLI GGNNCC 2 cut(s) 408, 502
BsrBI CCGCTC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 483
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 2 cut(s) 136, 421
Bst6I CTCTTC 2 cut(s) 117, 315
BstDEI CTNAG 3 cut(s) 7, 144, 536
BstF5I GGATG 1 cut(s) 107
BstFNI CGCG 1 cut(s) 26
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 1 cut(s) 3
BstUI CGCG 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 151
BsuRI GGCC 1 cut(s) 482
BtsCI GGATG 1 cut(s) 107
BtsIMutI CAGTG 2 cut(s) 292, 426
CciI TCATGA 1 cut(s) 118
Csp6I GTAC 1 cut(s) 60
CviAII CATG 1 cut(s) 119
CviJI RGCY 6 cut(s) 142, 201, 394, 409, 427, 482
CviKI_1 RGCY 6 cut(s) 142, 201, 394, 409, 427, 482
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 3 cut(s) 7, 144, 536
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EaeI YGGCCR 1 cut(s) 480
Eam1104I CTCTTC 2 cut(s) 117, 315
EarI CTCTTC 2 cut(s) 117, 315
FaeI CATG 1 cut(s) 122
FaiI YATR 7 cut(s) 120, 131, 158, 187, 437, 543, 545
FalI AAGNNNNNCTT 2 cut(s) 379, 411
FatI CATG 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 140
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 140
FspBI CTAG 1 cut(s) 63
GluI GCNGC 1 cut(s) 140
HaeIII GGCC 1 cut(s) 482
Hin1II CATG 1 cut(s) 122
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 1 cut(s) 282
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 4 cut(s) 10, 433, 451, 537
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 2 cut(s) 272, 455
HpyCH4III ACNGT 2 cut(s) 136, 421
HpyCH4IV ACGT 1 cut(s) 446
HpyCH4V TGCA 3 cut(s) 139, 185, 341
HpyF3I CTNAG 3 cut(s) 7, 144, 536
HpySE526I ACGT 1 cut(s) 446
Hsp92II CATG 1 cut(s) 122
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 406
LpnPI CCDG 4 cut(s) 244, 332, 365, 517
Lsp1109I GCAGC 1 cut(s) 151
LweI GCATC 1 cut(s) 92
MaeI CTAG 1 cut(s) 63
MaeII ACGT 1 cut(s) 446
MaeIII GTNAC 1 cut(s) 161
MalI GATC 1 cut(s) 5
MbiI CCGCTC 1 cut(s) 242
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 134, 332
MfeI CAATTG 1 cut(s) 108
MluCI AATT 2 cut(s) 108, 248
MlyI GAGTC 1 cut(s) 291
MseI TTAA 3 cut(s) 230, 246, 363
MslI CAYNNNNRTG 1 cut(s) 190
MunI CAATTG 1 cut(s) 108
MvnI CGCG 1 cut(s) 26
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 2 cut(s) 408, 502
NmeAIII GCCGAG 1 cut(s) 508
NmuCI GTSAC 1 cut(s) 161
PagI TCATGA 1 cut(s) 118
PkrI GCNGC 1 cut(s) 141
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PspN4I GGNNCC 2 cut(s) 408, 502
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
RseI CAYNNNNRTG 1 cut(s) 190
SaqAI TTAA 3 cut(s) 230, 246, 363
SatI GCNGC 1 cut(s) 140
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 1 cut(s) 291
SetI ASST 5 cut(s) 237, 309, 370, 449, 530
SfaNI GCATC 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 190
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 2 cut(s) 108, 248
SsiI CCGC 2 cut(s) 240, 330
SspMI CTAG 1 cut(s) 63
TaaI ACNGT 2 cut(s) 136, 421
TaiI ACGT 1 cut(s) 449
TasI AATT 2 cut(s) 108, 248
Tru1I TTAA 3 cut(s) 230, 246, 363
Tru9I TTAA 3 cut(s) 230, 246, 363
TscAI CASTG 2 cut(s) 292, 426
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 1 cut(s) 139
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 4 cut(s) 107, 135, 333, 474
TspRI CASTG 2 cut(s) 292, 426
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.