Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000391.1

Orthogroup ID

OG0011675

Physical Location & Seq

Genomic Coordinates Reverse (-)

28424 .. 30319

Gene Structure 1896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000391.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

atgatatcagaggaggagggcaacgcgagggttttgtggtgtctcaagtgtaaagagggtactagtgaaaccaacagattgttggtttgttgtgagaatggatgcccaattgttattcatgaagagtgtatgacggtgcagcctcagtttgatgatatggggcaaccgaaggagacagtgagcagaggaggaggagggaggttgaagatgatgaagagaatggcggtgtatctgcaaggcaggattttgagaatgttaaacgatgatgaagacaatggcggtgtatctgcaaggcaggattttgagaatgttaaaggtggagaaagagagcctttggtggtggagcctctgctaacagtgaggctttctgatatacaaggaacgcaggattttgagaatgttaaaggtggagaaagacaggaggaaagagagcctttggtggtggagcctctgctaacagtgaggctttctgatatacaagggacgtcagatggagatgaaggacttggcaaaagggtggccgaggaggaggacaatggaaccagaaagttgccaaaatctttgagcacaagcttcgtatgtcttgatagaaggagagtattatggaccaaggaagaggaacaagctttaaaggagggagtgaaagaattttggaccacaaatagaaagtctataccctgggagaaaatttgtcaggcttacaaagatagatttcacagttcacgtactgcagctaatctcaaggataaatggaagtttatgaccaaaacggcaacaaaaaagggttgttttgaggaattgcaggtacctgaggtgaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

273

Amino Acids

31.08

Weight (kDa)

5.6

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011675)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68030
rosa_chinensis	RchiOBHm_Chr3g0447711
rosa_laevigata	RLG00000025976
rosa_multiflora	Rmu_ssc0000391.1_g000008
rosa_roxburghii	Rroxscaffold_6G00425890 Rroxscaffold_6G00425910
rosa_rugosa	Rorug02G0604100 Rorug02G0604200 Rorug02G0604300 Rorug02G0604400 Rorug02G0604400 Rorug02G0604500 Rorug02G0604600
rosa_samantha	Rh3AG004400 Rh3BG004000 Rh3BG004200 Rh3CG004500 Rh3DG004400
rosa_wichuraiana	Rw3G000330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	488
Acc36I	ACCTGC	1 cut(s)	793
Acc65I	GGTACC	1 cut(s)	805
AccB1I	GGYRCC	1 cut(s)	805
AccII	CGCG	1 cut(s)	26
AciI	CCGC	2 cut(s)	224, 279
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	2 cut(s)	647, 687
AcyI	GRCGYC	1 cut(s)	485
AfaI	GTAC	3 cut(s)	61, 727, 807
AgsI	TTSAA	1 cut(s)	205
AhlI	ACTAGT	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	677
AluBI	AGCT	3 cut(s)	573, 626, 734
AluI	AGCT	3 cut(s)	573, 626, 734
Alw21I	GWGCWC	1 cut(s)	569
Alw26I	GTCTC	2 cut(s)	47, 167
AoxI	GGCC	1 cut(s)	519
ApeKI	GCWGC	2 cut(s)	139, 731
ApoI	RAATTY	2 cut(s)	647, 687
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
Asp718I	GGTACC	1 cut(s)	805
AspS9I	GGNCC	2 cut(s)	606, 654
AvaII	GGWCC	2 cut(s)	606, 654
AxyI	CCTNAGG	1 cut(s)	810
BanI	GGYRCC	1 cut(s)	805
BbsI	GAAGAC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	569
BbvI	GCAGC	2 cut(s)	151, 743
BccI	CCATC	1 cut(s)	485
BceAI	ACGGC	1 cut(s)	786
BcgI	CGANNNNNNTGC	2 cut(s)	556, 590
BciT130I	CCWGG	1 cut(s)	679
BcoDI	GTCTC	2 cut(s)	47, 167
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	729
BfuAI	ACCTGC	1 cut(s)	793
BisI	GCNGC	2 cut(s)	140, 732
BlsI	GCNGC	2 cut(s)	141, 733
Bme1390I	CCNGG	1 cut(s)	679
Bme18I	GGWCC	2 cut(s)	606, 654
BmgT120I	GGNCC	2 cut(s)	606, 654
BmiI	GGNNCC	4 cut(s)	345, 447, 541, 807
BmrFI	CCNGG	1 cut(s)	679
BmsI	GCATC	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	276
BpuEI	CTTGAG	2 cut(s)	29, 725
BsaAI	YACGTR	1 cut(s)	725
BsaHI	GRCGYC	1 cut(s)	485
BsaJI	CCNNGG	4 cut(s)	522, 609, 677, 678
Bse21I	CCTNAGG	1 cut(s)	810
BseBI	CCWGG	1 cut(s)	679
BseDI	CCNNGG	4 cut(s)	522, 609, 677, 678
BseGI	GGATG	1 cut(s)	107
BseMII	CTCAG	2 cut(s)	158, 801
BseRI	GAGGAG	7 cut(s)	26, 29, 201, 204, 207, 539, 542
BseXI	GCAGC	2 cut(s)	151, 743
BsgI	GTGCAG	1 cut(s)	158
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	521
BshNI	GGYRCC	1 cut(s)	805
BsiHKAI	GWGCWC	1 cut(s)	569
BslFI	GGGAC	1 cut(s)	496
BsmAI	GTCTC	2 cut(s)	47, 167
BsmFI	GGGAC	1 cut(s)	496
BsnI	GGCC	1 cut(s)	521
Bsp1286I	GDGCHC	1 cut(s)	569
BspACI	CCGC	2 cut(s)	224, 279
BspANI	GGCC	1 cut(s)	521
BspCNI	CTCAG	2 cut(s)	157, 802
BspFNI	CGCG	1 cut(s)	26
BspHI	TCATGA	1 cut(s)	118
BspLI	GGNNCC	4 cut(s)	345, 447, 541, 807
BspMAI	CTGCAG	1 cut(s)	733
BspMI	ACCTGC	1 cut(s)	793
BspT107I	GGYRCC	1 cut(s)	805
BssECI	CCNNGG	4 cut(s)	522, 609, 677, 678
BssNI	GRCGYC	1 cut(s)	485
BssT1I	CCWWGG	1 cut(s)	609
Bst2UI	CCWGG	1 cut(s)	679
Bst4CI	ACNGT	5 cut(s)	136, 178, 358, 460, 719
Bst6I	CTCTTC	3 cut(s)	117, 209, 609
BstACI	GRCGYC	1 cut(s)	485
BstBAI	YACGTR	1 cut(s)	725
BstDEI	CTNAG	2 cut(s)	144, 810
BstF5I	GGATG	1 cut(s)	107
BstFNI	CGCG	1 cut(s)	26
BstMAI	GTCTC	2 cut(s)	47, 167
BstNI	CCWGG	1 cut(s)	679
BstSCI	CCNGG	1 cut(s)	677
BstSFI	CTRYAG	1 cut(s)	729
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	151, 743
BstV2I	GAAGAC	1 cut(s)	276
Bsu36I	CCTNAGG	1 cut(s)	810
BsuRI	GGCC	1 cut(s)	521
BtsCI	GGATG	1 cut(s)	107
BtsIMutI	CAGTG	3 cut(s)	183, 363, 465
BveI	ACCTGC	1 cut(s)	793
CciI	TCATGA	1 cut(s)	118
Cfr13I	GGNCC	2 cut(s)	606, 654
Csp6I	GTAC	3 cut(s)	60, 726, 806
CviAII	CATG	1 cut(s)	119
CviQI	GTAC	3 cut(s)	60, 726, 806
DdeI	CTNAG	2 cut(s)	144, 810
DraI	TTTAAA	1 cut(s)	630
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	3 cut(s)	117, 209, 609
EarI	CTCTTC	3 cut(s)	117, 209, 609
Eco130I	CCWWGG	1 cut(s)	609
Eco32I	GATATC	1 cut(s)	6
Eco47I	GGWCC	2 cut(s)	606, 654
Eco81I	CCTNAGG	1 cut(s)	810
EcoRII	CCWGG	1 cut(s)	677
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	1 cut(s)	122
FaiI	YATR	9 cut(s)	120, 131, 158, 374, 476, 580, 604, 674, 761
FalI	AAGNNNNNCTT	4 cut(s)	316, 348, 418, 450
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	1 cut(s)	118
Fnu4HI	GCNGC	2 cut(s)	140, 732
FokI	GGATG	1 cut(s)	114
Fsp4HI	GCNGC	2 cut(s)	140, 732
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	2 cut(s)	140, 732
HaeIII	GGCC	1 cut(s)	521
Hin1I	GRCGYC	1 cut(s)	485
Hin1II	CATG	1 cut(s)	122
HindIII	AAGCTT	2 cut(s)	571, 624
Hpy166II	GTNNAC	1 cut(s)	722
Hpy188I	TCNGA	4 cut(s)	10, 370, 472, 490
Hpy188III	TCNNGA	2 cut(s)	119, 584
Hpy8I	GTNNAC	1 cut(s)	722
HpyAV	CCTTC	3 cut(s)	163, 494, 585
HpyCH4III	ACNGT	5 cut(s)	136, 178, 358, 460, 719
HpyCH4IV	ACGT	2 cut(s)	485, 724
HpyCH4V	TGCA	5 cut(s)	139, 235, 290, 731, 802
HpyF3I	CTNAG	2 cut(s)	144, 810
HpySE526I	ACGT	2 cut(s)	485, 724
Hsp92I	GRCGYC	1 cut(s)	485
Hsp92II	CATG	1 cut(s)	122
KpnI	GGTACC	1 cut(s)	809
LmnI	GCTCC	2 cut(s)	343, 445
LpnPI	CCDG	9 cut(s)	226, 281, 371, 404, 556, 664, 680, 691, 788
Lsp1109I	GCAGC	2 cut(s)	151, 743
LweI	GCATC	1 cut(s)	92
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	2 cut(s)	485, 724
MboII	GAAGA	5 cut(s)	134, 217, 226, 281, 626
MfeI	CAATTG	1 cut(s)	108
MhlI	GDGCHC	1 cut(s)	569
MluCI	AATT	4 cut(s)	108, 647, 687, 797
MseI	TTAA	4 cut(s)	257, 312, 402, 629
MspR9I	CCNGG	1 cut(s)	679
MunI	CAATTG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	679
MvnI	CGCG	1 cut(s)	26
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	4 cut(s)	345, 447, 541, 807
NmeAIII	GCCGAG	1 cut(s)	547
PagI	TCATGA	1 cut(s)	118
PasI	CCCWGGG	1 cut(s)	678
PkrI	GCNGC	2 cut(s)	141, 733
Ppu21I	YACGTR	1 cut(s)	725
Psp6I	CCWGG	1 cut(s)	677
PspGI	CCWGG	1 cut(s)	677
PspN4I	GGNNCC	4 cut(s)	345, 447, 541, 807
PspPI	GGNCC	2 cut(s)	606, 654
PstI	CTGCAG	1 cut(s)	733
RsaI	GTAC	3 cut(s)	61, 727, 807
RsaNI	GTAC	3 cut(s)	60, 726, 806
SaqAI	TTAA	4 cut(s)	257, 312, 402, 629
SatI	GCNGC	2 cut(s)	140, 732
Sau96I	GGNCC	2 cut(s)	606, 654
ScrFI	CCNGG	1 cut(s)	679
SduI	GDGCHC	1 cut(s)	569
SfaNI	GCATC	1 cut(s)	92
SfcI	CTRYAG	1 cut(s)	729
SinI	GGWCC	2 cut(s)	606, 654
SmlI	CTYRAG	2 cut(s)	44, 740
SmoI	CTYRAG	2 cut(s)	44, 740
SpeI	ACTAGT	1 cut(s)	62
Sse9I	AATT	4 cut(s)	108, 647, 687, 797
SsiI	CCGC	2 cut(s)	224, 279
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	677
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	5 cut(s)	136, 178, 358, 460, 719
TaiI	ACGT	2 cut(s)	488, 727
TasI	AATT	4 cut(s)	108, 647, 687, 797
Tru1I	TTAA	4 cut(s)	257, 312, 402, 629
Tru9I	TTAA	4 cut(s)	257, 312, 402, 629
TscAI	CASTG	3 cut(s)	183, 363, 465
TseI	GCWGC	2 cut(s)	139, 731
TspDTI	ATGAA	5 cut(s)	107, 135, 227, 282, 513
TspRI	CASTG	3 cut(s)	183, 363, 465
VpaK11BI	GGWCC	2 cut(s)	606, 654
XapI	RAATTY	2 cut(s)	647, 687
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XspI	CTAG	1 cut(s)	63
ZraI	GACGTC	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.