Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005562

Physical Location & Seq

Genomic Coordinates Forward (+)

2218433 .. 2218849

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41814

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGGATATAGTAAAACAATTAATATATTTCATACAGTGGTTGGAGTGACGCAGTCGCAAGGCAGAAGTGGCGGTGATTATTGCTATAATGGTCACCAACCCTCCTCTGCAGCTTCGCAGCAAAGTTCCCGATGGAATCCAACCCCAGAGCAGTTACGGGTCCTGGAAGAGCTGTATGGACATGGATTAAAGACACCAACGGCAGAACAAATCCGACAAGTGACTGCGCGGCTTCAACACTTTGGAAAGATTGAATACAAGAATGTCTTCTACTGGTTTCAGAACCACCGAGCGAGGGAGAGACAGAAGAGACGACATGAACTCCTGTCCATGCCTCAGTATCACTCTAAGGAAAAACAACTTTGGAGCAACAAAGAATCTGCAGGAGGTATTGGCCTTGGGACTGTACTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

138

Amino Acids

15.91

Weight (kDa)

9.79

Isoelectric Point (pI)

67.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	43 - 102	8.6e-15	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005562)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450741 RchiOBHm_Chr3g0450831 RchiOBHm_Chr3g0450921 RchiOBHm_Chr3g0450931
rosa_laevigata	RLG00000025699 RLG00000025703 RLG00000025706
rosa_multiflora	Rmu_sc0000078.1_g000007
rosa_roxburghii	Rroxscaffold_6G00428400 Rroxscaffold_6G00428530 Rroxscaffold_7G00179190
rosa_rugosa	Rorug02G0630300 Rorug02G0630700
rosa_samantha	Rh3AG031000 Rh3AG031300 Rh3AG032100 Rh3AG033000 Rh3BG031400 Rh3BG031800 Rh3BG032500 Rh3BG033300 Rh3CG030200 Rh3CG030600 Rh3CG031200 Rh3CG032100 Rh3DG031200 Rh3DG031500 Rh3DG032100 Rh3DG033100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	229
AciI	CCGC	2 cut(s)	72, 229
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	2 cut(s)	236, 254
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	2 cut(s)	113, 172
AluI	AGCT	2 cut(s)	113, 172
Alw26I	GTCTC	2 cut(s)	295, 304
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	2 cut(s)	110, 118
AseI	ATTAAT	1 cut(s)	21
Asp700I	GAANNNNTTC	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	86, 86
AvaII	GGWCC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	259
BbvI	GCAGC	2 cut(s)	122, 130
BccI	CCATC	1 cut(s)	126
BceAI	ACGGC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	164
BcoDI	GTCTC	2 cut(s)	295, 304
BfmI	CTRYAG	2 cut(s)	108, 381
BisI	GCNGC	3 cut(s)	111, 119, 230
BlsI	GCNGC	3 cut(s)	112, 120, 231
Bme1390I	CCNGG	1 cut(s)	164
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	397
BsaXI	ACNNNNNCTCC	4 cut(s)	86, 116, 306, 336
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	397
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMII	CTCAG	1 cut(s)	350
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	122, 130
Bsh1236I	CGCG	1 cut(s)	229
BshFI	GGCC	1 cut(s)	396
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	2 cut(s)	295, 304
BsmBI	CGTCTC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	396
BspACI	CCGC	2 cut(s)	72, 229
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	161
BspMAI	CTGCAG	2 cut(s)	112, 385
BspQI	GCTCTTC	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	397
BssT1I	CCWWGG	1 cut(s)	397
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	3 cut(s)	37, 406, 411
Bst6I	CTCTTC	2 cut(s)	162, 302
BstDEI	CTNAG	2 cut(s)	336, 348
BstEII	GGTNACC	1 cut(s)	92
BstFNI	CGCG	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	229
BstMAI	GTCTC	2 cut(s)	295, 304
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	164
BstPI	GGTNACC	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	162
BstSFI	CTRYAG	2 cut(s)	108, 381
BstUI	CGCG	1 cut(s)	229
BstV1I	GCAGC	2 cut(s)	122, 130
BstV2I	GAAGAC	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	396
BtsIMutI	CAGTG	1 cut(s)	42
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	160
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	3 cut(s)	182, 317, 331
CviJI	RGCY	4 cut(s)	113, 172, 232, 396
CviKI_1	RGCY	4 cut(s)	113, 172, 232, 396
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	2 cut(s)	336, 348
Eam1104I	CTCTTC	2 cut(s)	162, 302
EarI	CTCTTC	2 cut(s)	162, 302
Eco130I	CCWWGG	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	160
Eco91I	GGTNACC	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	160
EcoO65I	GGTNACC	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	162
EcoT14I	CCWWGG	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	397
Esp3I	CGTCTC	1 cut(s)	304
FaeI	CATG	3 cut(s)	185, 320, 334
FaiI	YATR	8 cut(s)	9, 26, 33, 87, 177, 183, 318, 332
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FatI	CATG	3 cut(s)	181, 316, 330
Fnu4HI	GCNGC	3 cut(s)	111, 119, 230
Fsp4HI	GCNGC	3 cut(s)	111, 119, 230
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	3 cut(s)	111, 119, 230
HaeIII	GGCC	1 cut(s)	396
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	3 cut(s)	185, 320, 334
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HinfI	GANTC	2 cut(s)	136, 377
HphI	GGTGA	2 cut(s)	86, 86
Hpy188I	TCNGA	2 cut(s)	215, 282
Hpy188III	TCNNGA	1 cut(s)	129
HpyCH4III	ACNGT	3 cut(s)	37, 406, 411
HpyCH4V	TGCA	2 cut(s)	110, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	2 cut(s)	336, 348
Hsp92II	CATG	3 cut(s)	185, 320, 334
HspAI	GCGC	1 cut(s)	227
LguI	GCTCTTC	1 cut(s)	162
LmnI	GCTCC	1 cut(s)	366
LpnPI	CCDG	6 cut(s)	149, 159, 176, 259, 338, 369
Lsp1109I	GCAGC	2 cut(s)	122, 130
MaeIII	GTNAC	4 cut(s)	46, 92, 153, 220
MboII	GAAGA	3 cut(s)	179, 259, 319
MluCI	AATT	1 cut(s)	18
MmeI	TCCRAC	3 cut(s)	22, 164, 238
MnlI	CCTC	5 cut(s)	112, 115, 288, 345, 380
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	3 cut(s)	21, 188, 415
MspR9I	CCNGG	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	164
MvnI	CGCG	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	69
NlaIII	CATG	3 cut(s)	185, 320, 334
NlaIV	GGNNCC	1 cut(s)	161
NmuCI	GTSAC	3 cut(s)	46, 92, 220
PciSI	GCTCTTC	1 cut(s)	162
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	136, 377
PflFI	GACNNNGTC	1 cut(s)	52
PfoI	TCCNGGA	1 cut(s)	162
PkrI	GCNGC	3 cut(s)	112, 120, 231
PpuMI	RGGWCCY	1 cut(s)	160
PshBI	ATTAAT	1 cut(s)	21
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	162
PspEI	GGTNACC	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	160
PspPPI	RGGWCCY	1 cut(s)	160
PstI	CTGCAG	2 cut(s)	112, 385
PsyI	GACNNNGTC	1 cut(s)	52
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SapI	GCTCTTC	1 cut(s)	162
SaqAI	TTAA	3 cut(s)	21, 188, 415
SatI	GCNGC	3 cut(s)	111, 119, 230
Sau96I	GGNCC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	164
SetI	ASST	3 cut(s)	115, 174, 391
SfcI	CTRYAG	2 cut(s)	108, 381
SinI	GGWCC	1 cut(s)	160
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	2 cut(s)	72, 229
StyD4I	CCNGG	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	397
TaaI	ACNGT	3 cut(s)	37, 406, 411
TasI	AATT	1 cut(s)	18
TatI	WGTACW	1 cut(s)	406
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	2 cut(s)	136, 377
Tru1I	TTAA	3 cut(s)	21, 188, 415
Tru9I	TTAA	3 cut(s)	21, 188, 415
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	3 cut(s)	46, 92, 220
TseI	GCWGC	2 cut(s)	110, 118
Tsp45I	GTSAC	3 cut(s)	46, 92, 220
TspDTI	ATGAA	2 cut(s)	20, 333
TspRI	CASTG	1 cut(s)	42
Tth111I	GACNNNGTC	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	160
VspI	ATTAAT	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.