Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0005562

Physical Location & Seq

Genomic Coordinates Forward (+)

2103914 .. 2104707

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG030600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAACTAGGGCTTAACACTAGGCTGGTGAGGCTACCTCCTTTAGCTGCAGGACTGAGAAGGTCAAGTACTCTTGAAATTGAGCACCAGAATAAATGGATACTGTCAAACTGCGGTGTTCTTGTTGATCAGGAATTATCTCCAGGGCTGCGAAAGAGGATGAGCATGGTAACGGGCAATTACTCCGGTCAATTGGAGGAGCAATCCTATTCGGCTACACTGACCTCGGAAGCACAACGAACAAACGCATCAGCTACATTAATATACCCAAAGCTCTTCGACTATCATCATCCCCATTATGATTATGATTACGGTATGGTGTTGAGTGCACCCAATATTTACAAAGGAGCAGAAAGTAGATTAGAATCTCAAACTCTGGAGCTCTTTCCACTTGAGAGCGGCAATGTTAAGGGTGTTAATGATACCAAATCACCAATGATTAGAACCACAAACACAGACAGTAATGAAGATTTCATGGCAGACCAATATTTTCAATTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.89

Weight (kDa)

5.34

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005562)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450741 RchiOBHm_Chr3g0450831 RchiOBHm_Chr3g0450921 RchiOBHm_Chr3g0450931
rosa_laevigata	RLG00000025699 RLG00000025703 RLG00000025706
rosa_multiflora	Rmu_sc0000078.1_g000007
rosa_roxburghii	Rroxscaffold_6G00428400 Rroxscaffold_6G00428530 Rroxscaffold_7G00179190
rosa_rugosa	Rorug02G0630300 Rorug02G0630700
rosa_samantha	Rh3AG031000 Rh3AG031300 Rh3AG032100 Rh3AG033000 Rh3BG031400 Rh3BG031800 Rh3BG032500 Rh3BG033300 Rh3CG030200 Rh3CG030600 Rh3CG031200 Rh3CG032100 Rh3DG031200 Rh3DG031500 Rh3DG032100 Rh3DG033100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	399
AciI	CCGC	2 cut(s)	114, 399
AfaI	GTAC	1 cut(s)	70
AgsI	TTSAA	2 cut(s)	77, 494
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	4 cut(s)	47, 254, 274, 382
AluI	AGCT	4 cut(s)	47, 254, 274, 382
Alw21I	GWGCWC	3 cut(s)	87, 331, 384
Alw44I	GTGCAC	1 cut(s)	327
ApaLI	GTGCAC	1 cut(s)	327
ApeKI	GCWGC	2 cut(s)	47, 148
AseI	ATTAAT	1 cut(s)	260
AsuHPI	GGTGA	2 cut(s)	40, 423
BaeGI	GKGCMC	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	384
BarI	GAAGNNNNNNTAC	2 cut(s)	52, 84
Bbv12I	GWGCWC	3 cut(s)	87, 331, 384
BbvI	GCAGC	2 cut(s)	34, 135
BciT130I	CCWGG	1 cut(s)	144
BciVI	GTATCC	1 cut(s)	93
BclI	TGATCA	1 cut(s)	127
BfaI	CTAG	2 cut(s)	8, 21
BfmI	CTRYAG	1 cut(s)	48
BfuI	GTATCC	1 cut(s)	93
BisI	GCNGC	3 cut(s)	48, 149, 400
BlsI	GCNGC	3 cut(s)	49, 150, 401
BmcAI	AGTACT	1 cut(s)	70
Bme1390I	CCNGG	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	257
BplI	GAGNNNNNCTC	2 cut(s)	22, 54
BpmI	CTGGAG	2 cut(s)	126, 398
BpuEI	CTTGAG	1 cut(s)	413
BsaBI	GATNNNNATC	1 cut(s)	364
BsaJI	CCNNGG	2 cut(s)	143, 225
BsaWI	WCCGGW	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	409
Bse8I	GATNNNNATC	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	2 cut(s)	143, 225
BseGI	GGATG	2 cut(s)	165, 289
BseJI	GATNNNNATC	1 cut(s)	364
BseMI	GCAATG	1 cut(s)	409
BseMII	CTCAG	1 cut(s)	47
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	331
BseXI	GCAGC	2 cut(s)	34, 135
BsiHKAI	GWGCWC	3 cut(s)	87, 331, 384
BsiSI	CCGG	1 cut(s)	186
Bsp1286I	GDGCHC	3 cut(s)	87, 331, 384
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	2 cut(s)	114, 399
BspCNI	CTCAG	1 cut(s)	48
BspMAI	CTGCAG	1 cut(s)	52
BspQI	GCTCTTC	1 cut(s)	281
BsrBI	CCGCTC	1 cut(s)	399
BsrDI	GCAATG	1 cut(s)	409
BssECI	CCNNGG	2 cut(s)	143, 225
BssMI	GATC	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	3 cut(s)	105, 314, 461
Bst6I	CTCTTC	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	165, 289
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	331
BstV1I	GCAGC	2 cut(s)	34, 135
BsuI	GTATCC	1 cut(s)	93
BtsCI	GGATG	2 cut(s)	165, 289
BtsIMutI	CAGTG	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	2 cut(s)	166, 475
CviJI	RGCY	9 cut(s)	13, 25, 34, 47, 148, 215, 254, 274, 382
CviKI_1	RGCY	9 cut(s)	13, 25, 34, 47, 148, 215, 254, 274, 382
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Ecl136II	GAGCTC	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	384
Eco53kI	GAGCTC	1 cut(s)	382
EcoICRI	GAGCTC	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	384
FaeI	CATG	2 cut(s)	169, 478
FaiI	YATR	6 cut(s)	167, 265, 300, 306, 317, 476
FatI	CATG	2 cut(s)	165, 474
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	3 cut(s)	48, 149, 400
FokI	GGATG	2 cut(s)	172, 276
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	3 cut(s)	48, 149, 400
FspBI	CTAG	2 cut(s)	8, 21
GluI	GCNGC	3 cut(s)	48, 149, 400
GsuI	CTGGAG	2 cut(s)	126, 398
HapII	CCGG	1 cut(s)	186
Hin1II	CATG	2 cut(s)	169, 478
HinfI	GANTC	1 cut(s)	365
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	2 cut(s)	40, 423
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	3 cut(s)	74, 131, 377
Hpy8I	GTNNAC	1 cut(s)	329
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	3 cut(s)	105, 314, 461
HpyCH4V	TGCA	2 cut(s)	50, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	169, 478
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	127
LguI	GCTCTTC	1 cut(s)	281
LmnI	GCTCC	3 cut(s)	199, 347, 379
LpnPI	CCDG	8 cut(s)	11, 36, 101, 116, 129, 156, 199, 362
Lsp1109I	GCAGC	2 cut(s)	34, 135
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	2 cut(s)	8, 21
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	1 cut(s)	129
MbiI	CCGCTC	1 cut(s)	399
MboI	GATC	1 cut(s)	127
MboII	GAAGA	2 cut(s)	268, 479
MfeI	CAATTG	1 cut(s)	191
MhlI	GDGCHC	3 cut(s)	87, 331, 384
MluCI	AATT	5 cut(s)	78, 134, 178, 191, 494
MnlI	CCTC	5 cut(s)	24, 48, 150, 190, 235
MseI	TTAA	4 cut(s)	15, 260, 408, 417
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	144
MunI	CAATTG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	31
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	2 cut(s)	169, 478
PciSI	GCTCTTC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	3 cut(s)	49, 150, 401
PshBI	ATTAAT	1 cut(s)	260
Psp124BI	GAGCTC	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	52
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
SacI	GAGCTC	1 cut(s)	384
SapI	GCTCTTC	1 cut(s)	281
SaqAI	TTAA	4 cut(s)	15, 260, 408, 417
SatI	GCNGC	3 cut(s)	48, 149, 400
Sau3AI	GATC	1 cut(s)	127
ScaI	AGTACT	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	3 cut(s)	87, 331, 384
SetI	ASST	7 cut(s)	40, 49, 65, 227, 256, 276, 384
SfaNI	GCATC	1 cut(s)	257
SfcI	CTRYAG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	5 cut(s)	78, 134, 178, 191, 494
SsiI	CCGC	2 cut(s)	114, 399
SspI	AATATT	2 cut(s)	337, 488
SspMI	CTAG	2 cut(s)	8, 21
SstI	GAGCTC	1 cut(s)	384
StyD4I	CCNGG	1 cut(s)	142
TaaI	ACNGT	3 cut(s)	105, 314, 461
TaqI	TCGA	1 cut(s)	279
TasI	AATT	5 cut(s)	78, 134, 178, 191, 494
TatI	WGTACW	1 cut(s)	68
TauI	GCSGC	1 cut(s)	402
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	4 cut(s)	15, 260, 408, 417
Tru9I	TTAA	4 cut(s)	15, 260, 408, 417
TscAI	CASTG	1 cut(s)	225
TseI	GCWGC	2 cut(s)	47, 148
TspDTI	ATGAA	2 cut(s)	463, 480
TspRI	CASTG	1 cut(s)	225
VneI	GTGCAC	1 cut(s)	327
VspI	ATTAAT	1 cut(s)	260
XspI	CTAG	2 cut(s)	8, 21
ZrmI	AGTACT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.