Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005562

Physical Location & Seq

Genomic Coordinates Forward (+)

2255076 .. 2255828

Gene Structure 753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41823

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGGATATAGTAAAACAATTAATATATTTCATACAGAGGTTGGAGTGAAGTCGTTGCAAGGCCGGAGTGGCGGTGATGATTGCTATAATGGTCACCAACCTTCCTCTGCAGCTTCGCAGCCAAGTTCCCGATGGAATCCAACCCCAGAGCAGTTACGGGTTCTGGATGAGCTGTTCGGACATGGATTAAAGACACCGACGGCACAGCAAATCCTACAAGTGACTGCACGGCTTCGACACTTTGGAAAGATTGAAGGCAAGAATGTCTTCTACTGGTTTCAGAACCACCGAGCGAGGGAGAGACAGAAGAGACGAAGAGAACTCATGTCCATGCGTCAGTATCACTCTAAGGAACAACAACTTTGGAGTAACAAAGAATCTGCAGGAGGTATTGGTCTTGGGACTGTACTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

138

Amino Acids

15.82

Weight (kDa)

10.06

Isoelectric Point (pI)

69.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	43 - 102	2.9e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005562)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450741 RchiOBHm_Chr3g0450831 RchiOBHm_Chr3g0450921 RchiOBHm_Chr3g0450931
rosa_laevigata	RLG00000025699 RLG00000025703 RLG00000025706
rosa_multiflora	Rmu_sc0000078.1_g000007
rosa_roxburghii	Rroxscaffold_6G00428400 Rroxscaffold_6G00428530 Rroxscaffold_7G00179190
rosa_rugosa	Rorug02G0630300 Rorug02G0630700
rosa_samantha	Rh3AG031000 Rh3AG031300 Rh3AG032100 Rh3AG033000 Rh3BG031400 Rh3BG031800 Rh3BG032500 Rh3BG033300 Rh3CG030200 Rh3CG030600 Rh3CG031200 Rh3CG032100 Rh3DG031200 Rh3DG031500 Rh3DG032100 Rh3DG033100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	72
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	1 cut(s)	254
AloI	GAACNNNNNNTCC	2 cut(s)	158, 190
AluBI	AGCT	2 cut(s)	113, 172
AluI	AGCT	2 cut(s)	113, 172
Alw26I	GTCTC	2 cut(s)	295, 304
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	2 cut(s)	110, 118
AseI	ATTAAT	1 cut(s)	21
Asp700I	GAANNNNTTC	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	86, 86
BbsI	GAAGAC	1 cut(s)	259
BbvI	GCAGC	2 cut(s)	122, 130
BccI	CCATC	1 cut(s)	126
BceAI	ACGGC	2 cut(s)	216, 245
BcoDI	GTCTC	2 cut(s)	295, 304
BfmI	CTRYAG	2 cut(s)	108, 381
BglI	GCCNNNNNGGC	1 cut(s)	69
BisI	GCNGC	2 cut(s)	111, 119
BlsI	GCNGC	2 cut(s)	112, 120
BpiI	GAAGAC	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	58, 88
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseNI	ACTGG	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	122, 130
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	2 cut(s)	295, 304
BsmBI	CGTCTC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	63
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	1 cut(s)	63
BspMAI	CTGCAG	2 cut(s)	112, 385
BsrI	ACTGG	1 cut(s)	278
Bst4CI	ACNGT	2 cut(s)	406, 411
Bst6I	CTCTTC	2 cut(s)	302, 310
BstDEI	CTNAG	1 cut(s)	348
BstEII	GGTNACC	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	172
BstMAI	GTCTC	2 cut(s)	295, 304
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstPI	GGTNACC	1 cut(s)	92
BstSFI	CTRYAG	2 cut(s)	108, 381
BstV1I	GCAGC	2 cut(s)	122, 130
BstV2I	GAAGAC	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	172
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	3 cut(s)	182, 325, 331
CviJI	RGCY	5 cut(s)	63, 113, 121, 172, 232
CviKI_1	RGCY	5 cut(s)	63, 113, 121, 172, 232
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	1 cut(s)	348
Eam1104I	CTCTTC	2 cut(s)	302, 310
EarI	CTCTTC	2 cut(s)	302, 310
Eco91I	GGTNACC	1 cut(s)	92
EcoO65I	GGTNACC	1 cut(s)	92
Esp3I	CGTCTC	1 cut(s)	304
FaeI	CATG	3 cut(s)	185, 328, 334
FaiI	YATR	7 cut(s)	9, 26, 33, 87, 183, 326, 332
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FatI	CATG	3 cut(s)	181, 324, 330
Fnu4HI	GCNGC	2 cut(s)	111, 119
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	2 cut(s)	111, 119
GluI	GCNGC	2 cut(s)	111, 119
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	64
HgaI	GACGC	1 cut(s)	323
Hin1II	CATG	3 cut(s)	185, 328, 334
HinfI	GANTC	2 cut(s)	136, 377
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	2 cut(s)	86, 86
Hpy188I	TCNGA	2 cut(s)	179, 282
Hpy188III	TCNNGA	2 cut(s)	129, 164
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	2 cut(s)	111, 248
HpyCH4III	ACNGT	2 cut(s)	406, 411
HpyCH4V	TGCA	4 cut(s)	58, 110, 227, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	1 cut(s)	348
Hsp92II	CATG	3 cut(s)	185, 328, 334
LpnPI	CCDG	5 cut(s)	77, 149, 159, 259, 369
Lsp1109I	GCAGC	2 cut(s)	122, 130
MaeIII	GTNAC	4 cut(s)	92, 153, 220, 368
MboII	GAAGA	3 cut(s)	259, 319, 327
MluCI	AATT	1 cut(s)	18
MmeI	TCCRAC	2 cut(s)	22, 164
MnlI	CCTC	4 cut(s)	31, 115, 288, 380
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	3 cut(s)	21, 188, 415
MslI	CAYNNNNRTG	1 cut(s)	329
MspI	CCGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	69
NlaIII	CATG	3 cut(s)	185, 328, 334
NmuCI	GTSAC	2 cut(s)	92, 220
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	136, 377
PkrI	GCNGC	2 cut(s)	112, 120
PshBI	ATTAAT	1 cut(s)	21
PspEI	GGTNACC	1 cut(s)	92
PstI	CTGCAG	2 cut(s)	112, 385
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
RseI	CAYNNNNRTG	1 cut(s)	329
SaqAI	TTAA	3 cut(s)	21, 188, 415
SatI	GCNGC	2 cut(s)	111, 119
SetI	ASST	5 cut(s)	42, 103, 115, 174, 391
SfcI	CTRYAG	2 cut(s)	108, 381
SmiMI	CAYNNNNRTG	1 cut(s)	329
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	406, 411
TaqI	TCGA	1 cut(s)	235
TasI	AATT	1 cut(s)	18
TatI	WGTACW	1 cut(s)	406
TfiI	GAWTC	2 cut(s)	136, 377
Tru1I	TTAA	3 cut(s)	21, 188, 415
Tru9I	TTAA	3 cut(s)	21, 188, 415
TseFI	GTSAC	2 cut(s)	92, 220
TseI	GCWGC	2 cut(s)	110, 118
Tsp45I	GTSAC	2 cut(s)	92, 220
TspDTI	ATGAA	1 cut(s)	20
VspI	ATTAAT	1 cut(s)	21
XcmI	CCANNNNNNNNNTGG	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.