Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005562

Physical Location & Seq

Genomic Coordinates Reverse (-)

47718078 .. 47719131

Gene Structure 1054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025699

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGACCCAAAGTTATGTGTTATCGTTCAACCACCACCATCATAAGGTGCCAATGATTATTGTTGCAGCTTCGCAGCGAAGTTCCCGTTGGAATCCAACCCCGGAGCAATTACGGGTCCTGGAAGAGCTGCAAGAATGTCTTCTACTGGTTCAGAACCACCGAGCGAGGGAGAGACAGAAGAGACGAAGAGAACTCATGTCCATGCCTCAGTATCACTCTATCGATTGGAGTAACAAAGAATCTGCAGGAGCTGCAGGACAGAGAAGGTCAAGTACTCTTGAAATTGAGCACCAGAATAAATGGACACTGTCAAACTGCGGTGTTCTTGCTGATCAGTCGGCGGGAATTATCTTTAGTGCTGCAAAAGAGGATGAGCATGGTGACCGGCAATTACTCCGGTCAATTGGAGGAGCAACCCTATTCGGCTACACCCACCATACGTATCAGCTACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

152

Amino Acids

17.41

Weight (kDa)

9.06

Isoelectric Point (pI)

76.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005562)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450741 RchiOBHm_Chr3g0450831 RchiOBHm_Chr3g0450921 RchiOBHm_Chr3g0450931
rosa_laevigata	RLG00000025699 RLG00000025703 RLG00000025706
rosa_multiflora	Rmu_sc0000078.1_g000007
rosa_roxburghii	Rroxscaffold_6G00428400 Rroxscaffold_6G00428530 Rroxscaffold_7G00179190
rosa_rugosa	Rorug02G0630300 Rorug02G0630700
rosa_samantha	Rh3AG031000 Rh3AG031300 Rh3AG032100 Rh3AG033000 Rh3BG031400 Rh3BG031800 Rh3BG032500 Rh3BG033300 Rh3CG030200 Rh3CG030600 Rh3CG031200 Rh3CG032100 Rh3DG031200 Rh3DG031500 Rh3DG032100 Rh3DG033100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	46
AciI	CCGC	2 cut(s)	318, 341
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	43, 166
AgsI	TTSAA	2 cut(s)	28, 281
AjnI	CCWGG	1 cut(s)	117
AjuI	GAANNNNNNNTTGG	2 cut(s)	70, 102
AluBI	AGCT	4 cut(s)	68, 127, 251, 448
AluI	AGCT	4 cut(s)	68, 127, 251, 448
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	2 cut(s)	166, 175
AlwNI	CAGNNNCTG	1 cut(s)	251
ApeKI	GCWGC	5 cut(s)	65, 73, 127, 251, 359
Asp700I	GAANNNNTTC	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	2 cut(s)	256, 288
BbsI	GAAGAC	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	5 cut(s)	77, 85, 114, 238, 346
BccI	CCATC	1 cut(s)	45
BciT130I	CCWGG	1 cut(s)	119
BclI	TGATCA	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	2 cut(s)	166, 175
BfmI	CTRYAG	2 cut(s)	243, 252
BisI	GCNGC	5 cut(s)	66, 74, 128, 252, 360
BlsI	GCNGC	5 cut(s)	67, 75, 129, 253, 361
BmcAI	AGTACT	1 cut(s)	274
Bme1390I	CCNGG	2 cut(s)	101, 119
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	2 cut(s)	48, 116
BmrFI	CCNGG	2 cut(s)	101, 119
BpiI	GAAGAC	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	101
Bsa29I	ATCGAT	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 166
Bse118I	RCCGGY	1 cut(s)	384
Bse1I	ACTGG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	119
BseCI	ATCGAT	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	376
BseLI	CCNNNNNNNGG	2 cut(s)	43, 166
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	423
BseXI	GCAGC	5 cut(s)	77, 85, 114, 238, 346
BshNI	GGYRCC	1 cut(s)	46
BshVI	ATCGAT	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	3 cut(s)	101, 385, 397
BslI	CCNNNNNNNGG	2 cut(s)	43, 166
BsmAI	GTCTC	2 cut(s)	166, 175
BsmBI	CGTCTC	1 cut(s)	175
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	2 cut(s)	318, 341
BspCNI	CTCAG	1 cut(s)	220
BspDI	ATCGAT	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	48, 116
BspMAI	CTGCAG	2 cut(s)	247, 256
BspQI	GCTCTTC	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	384
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	309
Bst6I	CTCTTC	3 cut(s)	117, 173, 181
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstBAI	YACGTR	1 cut(s)	441
BstDEI	CTNAG	1 cut(s)	207
BstEII	GGTNACC	1 cut(s)	380
BstF5I	GGATG	1 cut(s)	376
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	2 cut(s)	166, 175
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstNI	CCWGG	1 cut(s)	119
BstPI	GGTNACC	1 cut(s)	380
BstSCI	CCNGG	2 cut(s)	99, 117
BstSFI	CTRYAG	2 cut(s)	243, 252
BstSNI	TACGTA	1 cut(s)	441
BstV1I	GCAGC	5 cut(s)	77, 85, 114, 238, 346
BstV2I	GAAGAC	1 cut(s)	131
Bsu15I	ATCGAT	1 cut(s)	222
BsuTUI	ATCGAT	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	305
CaiI	CAGNNNCTG	1 cut(s)	251
Cfr10I	RCCGGY	1 cut(s)	384
Cfr13I	GGNCC	1 cut(s)	115
ClaI	ATCGAT	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	3 cut(s)	196, 202, 377
CviJI	RGCY	5 cut(s)	68, 127, 251, 426, 448
CviKI_1	RGCY	5 cut(s)	68, 127, 251, 426, 448
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	1 cut(s)	207
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
Eam1104I	CTCTTC	3 cut(s)	117, 173, 181
EarI	CTCTTC	3 cut(s)	117, 173, 181
Eco105I	TACGTA	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	115
Eco91I	GGTNACC	1 cut(s)	380
EcoO109I	RGGNCCY	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	117
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	3 cut(s)	199, 205, 380
FaiI	YATR	6 cut(s)	15, 42, 197, 203, 378, 438
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FatI	CATG	3 cut(s)	195, 201, 376
FauI	CCCGC	1 cut(s)	334
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	5 cut(s)	66, 74, 128, 252, 360
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	5 cut(s)	66, 74, 128, 252, 360
GluI	GCNGC	5 cut(s)	66, 74, 128, 252, 360
HapII	CCGG	3 cut(s)	101, 385, 397
Hin1II	CATG	3 cut(s)	199, 205, 380
HinfI	GANTC	2 cut(s)	91, 239
HpaII	CCGG	3 cut(s)	101, 385, 397
HphI	GGTGA	1 cut(s)	392
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	1 cut(s)	309
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	5 cut(s)	65, 130, 245, 254, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	207
HpySE526I	ACGT	1 cut(s)	440
Hsp92II	CATG	3 cut(s)	199, 205, 380
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	1 cut(s)	331
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	3 cut(s)	103, 248, 410
LpnPI	CCDG	9 cut(s)	104, 114, 131, 131, 231, 240, 305, 398, 410
Lsp1109I	GCAGC	5 cut(s)	77, 85, 114, 238, 346
MaeII	ACGT	1 cut(s)	440
MaeIII	GTNAC	2 cut(s)	230, 380
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	4 cut(s)	131, 134, 190, 198
MfeI	CAATTG	1 cut(s)	402
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	5 cut(s)	107, 282, 345, 389, 402
MmeI	TCCRAC	2 cut(s)	68, 119
MnlI	CCTC	4 cut(s)	159, 216, 361, 401
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	1 cut(s)	454
MslI	CAYNNNNRTG	1 cut(s)	200
MspI	CCGG	3 cut(s)	101, 385, 397
MspR9I	CCNGG	2 cut(s)	101, 119
MunI	CAATTG	1 cut(s)	402
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	251
NciI	CCSGG	1 cut(s)	101
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	3 cut(s)	199, 205, 380
NlaIV	GGNNCC	2 cut(s)	48, 116
NmuCI	GTSAC	1 cut(s)	380
PciSI	GCTCTTC	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	91, 239
PflFI	GACNNNGTC	1 cut(s)	307
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	5 cut(s)	67, 75, 129, 253, 361
Ppu21I	YACGTR	1 cut(s)	441
PpuMI	RGGWCCY	1 cut(s)	115
Psp5II	RGGWCCY	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	117
PspEI	GGTNACC	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	48, 116
PspPI	GGNCC	1 cut(s)	115
PspPPI	RGGWCCY	1 cut(s)	115
PstI	CTGCAG	2 cut(s)	247, 256
PstNI	CAGNNNCTG	1 cut(s)	251
PsyI	GACNNNGTC	1 cut(s)	307
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	200
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	454
SatI	GCNGC	5 cut(s)	66, 74, 128, 252, 360
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	1 cut(s)	115
ScaI	AGTACT	1 cut(s)	274
ScrFI	CCNGG	2 cut(s)	101, 119
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	7 cut(s)	48, 70, 129, 253, 269, 443, 450
SfcI	CTRYAG	2 cut(s)	243, 252
SinI	GGWCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	200
SnaBI	TACGTA	1 cut(s)	441
Sse9I	AATT	5 cut(s)	107, 282, 345, 389, 402
SsiI	CCGC	2 cut(s)	318, 341
StyD4I	CCNGG	2 cut(s)	99, 117
TaaI	ACNGT	1 cut(s)	309
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	1 cut(s)	222
TasI	AATT	5 cut(s)	107, 282, 345, 389, 402
TatI	WGTACW	1 cut(s)	272
TfiI	GAWTC	2 cut(s)	91, 239
Tru1I	TTAA	1 cut(s)	454
Tru9I	TTAA	1 cut(s)	454
TscAI	CASTG	1 cut(s)	312
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	5 cut(s)	65, 73, 127, 251, 359
Tsp45I	GTSAC	1 cut(s)	380
TspRI	CASTG	1 cut(s)	312
Tth111I	GACNNNGTC	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	138
ZrmI	AGTACT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.