Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005562

Physical Location & Seq

Genomic Coordinates Reverse (-)

74532238 .. 74535072

Gene Structure 2835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0630300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2733 bp

ATGGACACAGACGAAGGGGGCCTTCGGTACAGTGACCATATTTATCATGAGTGTTTATCATCAGACGATGAATCAGAAGATGAAATTTCGATTCGGTTTGGTAAATGCACTAAGGTAACAGCGCGTACAAAGGAGGCAAATGACAGTATAATACCTGGTGAATCGGGTGAATTGAGGAAATCACCAGGCGTAGTTGAAGAGGAGGAAACATTACCTGAGTGCGCTGTTCAAAGAACAGAATATGTGAACCACACGGGGTCCGCACAGCTGAATGGGAAGCACTTCGAAGACCTGACAATGGATGATATGATGGGGGTATACTTCCCAACTGTAGAAGAGGCAGAAAATTTCTACTCGCTGTACTCACGAATACTTGGTTTCAGCGTAAGGAGGGACAGAGTCCAGAAGGAAGGCAATGGTTTGGTGGTAAGGAGGCAGTGGGTCTGTTCAAAACAAGGATTGGCAAGTATCAAGTGCAGGAAGCAAAAAGGTGTGGATAAGAACAAAACTGCAAAGAATGAGAAGATTGGCGAGCAGAAAAAATCGAGGAGGAACATAATACCGAGGGGAGTAAGATACACAAGAGTTAACTGCCCGGTTTCATTTAGTGTTCGATATTGCAAAGATAAGGAGCTATACCGCGTGACTAAGTTTGTACAGGAGCACAATCATGACCTTGCAAAGTCCCATGAAGTTCAGTTCCTGCGGTCAAACCGTCGCGTGGAAGACAAAGATGGTGCTCAGGTGGAGTGCCTGCGCCGCGCACAAGTCCACACTAGTAGGGCGTATGAGCAACTGGTAGAGCAAGCCGGGGGACACGACGGTGTTGGCTTCTTGATGAAGGATCTGTACAACAAGATTTATGAGTTGAGGAAAAATGCTGAGATGGATGGAGATGCACAGGCTGCCATCACTTGGATGAACATGAGGGGAATGGAGTCAGAAGAGTTCTGCTGCAGGTACAGTTTGGATGAAGAAGGCAGACTTGCCAATCTGTTTTGGAGGGACTACCAATCATTTTTGGACTACAGCGCATATAGTGATGTGGTGATTATGGACAGCACATACAAGACAAATTTGTACGGAAAGCCTCTTGTTGTATTTGTTGGGTGCAATAATCACAGAGCTACAGTTGTTTTCGGGTTTGCCCTTATACGGGATGAGAGGGAGGATACGTACACATGGGTGTTTGAGAACTTCCTTGAGTCCATGGATTATAAACAACCTTCATCCATCCTAACCGACGACGATGAGTCAATCAGAAAGGTTGTTGAGCGGGTGATGCCAAGAGCTCGGCACAGTGAATGGGAGGCAGCTTGGCAATCAATTGTGGTTAGAAATGAGTTGTCGGACAATGCATGGGTTATAAGTTTGTATAACAAACGGGAGAGGTGGGCAGAAGCATTCTTCAGAGGGCACTTCTTTGGTGGAATGTGCAGTACCCAGCGCGTCGAAGGCATGCACGCAAAGCTGAAAAAGGAGATTGGGAGGCACACTAGGTTATGTGAAGTTATGCCAAGAATGGAGAGGACACTTGGCCGCATCCGGAACCGCGTACTGTATGACAACTTCAGGTCTAAAAACGGTGCTCCAGTATATGAGACACACATGAGGGGAATAGAGGAAGACGCATGTAGGCTGTTCACACACGACATCTTTGTTATGATTAAGTCCCAAATCTTGTTTGAGAGGAGGTTTGTTCTGGTGCAGAAAGTACCATTTCCCATTTCTGATACAGTGATGTTCTACCTTGCCCAATATGATAGGCCTGAACGACGGTGGTGTGTTGAGTTCCATTCAGACCCGACAAACCCAATATGGCTGTGCTCCTGCAAACTTTTTGAATCAGATGGTATTCCTTGTGGTCACATTTTCTGTGTCTTGAAAGATCAGCTTGTGTCAAGATATCCGGCTTCTTTGATAACCAAACGTTGGACAAAGTGTGTCGGTGATTCAACAGTTGCACCCAAAATTAAGGTCCCCAATCACGACAAGTCAGCTCAGGTGGCCAGGTATTCTGCCCTCATATCAGAAGTGTCCAAAGCGTGCTTAAATTACTCATTTTCAGATGAAGGTTTCAGGGTAGGAATGAATGAATTTGCAAGGCTAGTTCAAAGCTCAAGTGAGTTCAAGATAGATCCACCCATGGACACATCAAGAGTGCCTCCGAGCAGAAACGTTGTGAGGGACCCGAAAATATCCCGCACAAAGGGCATGCCCTCTAATCCCACAACAAACACTGAAAATGCCAACAAAGAGCATCGGATTTGCGGTAAATGTTTTATGCCCGGTCATAACAGGCGCACCTGTACAGCCGGTGAAGAAGGGGTTCGAAATCGTGGATATGCAGATTCCCATCATACGGTACCTTGTGTTGAAGCTTACTCAGGTTCGGTACCTGATGTTGCACCTTCAGTCCCAAATATGGCACACCTATCATCCTATGTGGCAGCCGCAGTCCCTGATCCCCCTGCCTCAGTTCCTCTTCCCGCAGACTTACCATATCATCCCACACCTTGTGTAACTGAGTATGGTATGGAGCTTGATTTTGATGTCAATGGCGCTAGCAGAGTTGGTGGTATTGGTCAATTCCCATTCTTCGTTGCATCCCAGCATTCCTCATCCTTCGGTATTCTGCCTTTTTCATTCAACCTGAACCAGACCGCCCCAGATGATGATGTTACGCAGCTGAAACCTTTATGTTCATATCCACCCCCCAAGTGGATCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

910

Amino Acids

104.03

Weight (kDa)

7.11

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	116 - 227	9.5e-13	FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like	PF21056	320 - 432	2.6e-09	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE	PF10551	349 - 433	1e-20	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005562)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450741 RchiOBHm_Chr3g0450831 RchiOBHm_Chr3g0450921 RchiOBHm_Chr3g0450931
rosa_laevigata	RLG00000025699 RLG00000025703 RLG00000025706
rosa_multiflora	Rmu_sc0000078.1_g000007
rosa_roxburghii	Rroxscaffold_6G00428400 Rroxscaffold_6G00428530 Rroxscaffold_7G00179190
rosa_rugosa	Rorug02G0630300 Rorug02G0630700
rosa_samantha	Rh3AG031000 Rh3AG031300 Rh3AG032100 Rh3AG033000 Rh3BG031400 Rh3BG031800 Rh3BG032500 Rh3BG033300 Rh3CG030200 Rh3CG030600 Rh3CG031200 Rh3CG032100 Rh3DG031200 Rh3DG031500 Rh3DG032100 Rh3DG033100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1218, 1367
Acc36I	ACCTGC	1 cut(s)	948
Acc65I	GGTACC	2 cut(s)	2365, 2395
AccB1I	GGYRCC	2 cut(s)	2365, 2395
AccB7I	CCANNNNNTGG	2 cut(s)	915, 1932
AccBSI	CCGCTC	1 cut(s)	1276
AccI	GTMKAC	1 cut(s)	318
AccII	CGCG	6 cut(s)	124, 642, 720, 762, 1449, 1554
AccIII	TCCGGA	1 cut(s)	1545
AclI	AACGTT	2 cut(s)	1930, 2178
AclWI	GGATC	5 cut(s)	852, 2132, 2459, 2719, 2732
AcoI	YGGCCR	2 cut(s)	1537, 2007
AcsI	RAATTY	4 cut(s)	84, 346, 1075, 2096
AcuI	CTGAAG	3 cut(s)	1393, 1555, 2397
AdeI	CACNNNGTG	1 cut(s)	2519
AhdI	GACNNNNNGTC	1 cut(s)	1252
AhlI	ACTAGT	1 cut(s)	776
AjnI	CCWGG	3 cut(s)	154, 184, 2009
AleI	CACNNNNGTG	2 cut(s)	822, 1184
Alw21I	GWGCWC	5 cut(s)	666, 742, 1294, 1591, 1829
Alw26I	GTCTC	1 cut(s)	1595
AlwI	GGATC	5 cut(s)	852, 2132, 2459, 2719, 2732
AlwNI	CAGNNNCTG	2 cut(s)	703, 2462
Aor13HI	TCCGGA	1 cut(s)	1545
AoxI	GGCC	4 cut(s)	19, 1537, 1766, 2007
ApeKI	GCWGC	5 cut(s)	905, 954, 1313, 2450, 2686
ApoI	RAATTY	4 cut(s)	84, 346, 1075, 2096
ArsI	GACNNNNNNTTYG	2 cut(s)	1962, 1994
Asp700I	GAANNNNTTC	2 cut(s)	281, 2328
Asp718I	GGTACC	2 cut(s)	2365, 2395
AspLEI	GCGC	8 cut(s)	124, 224, 759, 764, 1034, 1449, 2304, 2564
AspS9I	GGNCC	4 cut(s)	19, 258, 1978, 2188
AsuC2I	CCSGG	3 cut(s)	596, 811, 2289
AsuHPI	GGTGA	7 cut(s)	170, 174, 179, 1060, 1291, 1961, 2330
AsuII	TTCGAA	2 cut(s)	285, 2332
AsuNHI	GCTAGC	1 cut(s)	2564
AvaII	GGWCC	3 cut(s)	258, 1978, 2188
BaeGI	GKGCMC	1 cut(s)	1419
BalI	TGGCCA	1 cut(s)	2009
BamHI	GGATCC	1 cut(s)	2724
BanI	GGYRCC	2 cut(s)	2365, 2395
BanII	GRGCYC	1 cut(s)	1294
BarI	GAAGNNNNNNTAC	4 cut(s)	833, 865, 1553, 1585
BbsI	GAAGAC	3 cut(s)	294, 732, 1632
Bbv12I	GWGCWC	5 cut(s)	666, 742, 1294, 1591, 1829
BbvI	GCAGC	5 cut(s)	892, 941, 1325, 2462, 2698
BccI	CCATC	8 cut(s)	304, 728, 880, 884, 917, 1241, 1844, 2364
BciT130I	CCWGG	3 cut(s)	156, 186, 2011
BciVI	GTATCC	1 cut(s)	1165
BcnI	CCSGG	3 cut(s)	596, 811, 2289
BcoDI	GTCTC	1 cut(s)	1595
BcuI	ACTAGT	1 cut(s)	776
BfaI	CTAG	4 cut(s)	777, 1497, 2108, 2565
BfmI	CTRYAG	4 cut(s)	330, 955, 1027, 1128
BfoI	RGCGCY	1 cut(s)	2565
BfuAI	ACCTGC	1 cut(s)	948
BfuI	GTATCC	1 cut(s)	1165
BisI	GCNGC	8 cut(s)	760, 906, 955, 1314, 1540, 2451, 2454, 2687
BlsI	GCNGC	8 cut(s)	761, 907, 956, 1315, 1541, 2452, 2455, 2688
Bme1390I	CCNGG	6 cut(s)	156, 186, 596, 811, 2011, 2289
Bme18I	GGWCC	3 cut(s)	258, 1978, 2188
BmeRI	GACNNNNNGTC	1 cut(s)	1252
BmgT120I	GGNCC	4 cut(s)	19, 258, 1978, 2188
BmiI	GGNNCC	9 cut(s)	20, 259, 1550, 1980, 2189, 2190, 2367, 2397, 2726
BmrFI	CCNGG	6 cut(s)	156, 186, 596, 811, 2011, 2289
BmsI	GCATC	5 cut(s)	886, 1272, 1551, 2269, 2615
BmtI	GCTAGC	1 cut(s)	2568
BpiI	GAAGAC	3 cut(s)	294, 732, 1632
BpmI	CTGGAG	1 cut(s)	1575
Bpu10I	CCTNAGC	2 cut(s)	741, 2001
Bpu14I	TTCGAA	2 cut(s)	285, 2332
BpuEI	CTTGAG	2 cut(s)	1223, 2104
BpuMI	CCSGG	3 cut(s)	596, 811, 2289
BsaAI	YACGTR	1 cut(s)	1176
BsaBI	GATNNNNATC	1 cut(s)	2355
BsaJI	CCNNGG	4 cut(s)	563, 810, 1209, 2145
BsaWI	WCCGGW	1 cut(s)	1545
BsaXI	ACNNNNNCTCC	2 cut(s)	1160, 1190
Bse118I	RCCGGY	1 cut(s)	2315
Bse1I	ACTGG	2 cut(s)	801, 1592
Bse3DI	GCAATG	1 cut(s)	421
Bse8I	GATNNNNATC	1 cut(s)	2355
BseAI	TCCGGA	1 cut(s)	1545
BseBI	CCWGG	3 cut(s)	156, 186, 2011
BseDI	CCNNGG	4 cut(s)	563, 810, 1209, 2145
BseJI	GATNNNNATC	1 cut(s)	2355
BseMI	GCAATG	1 cut(s)	421
BseMII	CTCAG	7 cut(s)	207, 755, 873, 2015, 2400, 2490, 2517
BseNI	ACTGG	2 cut(s)	801, 1592
BseRI	GAGGAG	3 cut(s)	215, 562, 1705
BseSI	GKGCMC	1 cut(s)	1419
BseXI	GCAGC	5 cut(s)	892, 941, 1325, 2462, 2698
BseYI	CCCAGC	2 cut(s)	1443, 2610
BsgI	GTGCAG	3 cut(s)	496, 1456, 1727
Bsh1236I	CGCG	6 cut(s)	124, 642, 720, 762, 1449, 1554
BshFI	GGCC	4 cut(s)	21, 1539, 1768, 2009
BshNI	GGYRCC	2 cut(s)	2365, 2395
BsiHKAI	GWGCWC	5 cut(s)	666, 742, 1294, 1591, 1829
BsiSI	CCGG	6 cut(s)	596, 810, 1546, 1910, 2289, 2316
BslFI	GGGAC	9 cut(s)	407, 670, 828, 1019, 1657, 1964, 2201, 2402, 2444
BsmAI	GTCTC	1 cut(s)	1595
BsmFI	GGGAC	9 cut(s)	407, 670, 828, 1019, 1657, 1964, 2201, 2402, 2444
BsmI	GAATGC	2 cut(s)	1403, 2614
BsnI	GGCC	4 cut(s)	21, 1539, 1768, 2009
Bsp119I	TTCGAA	2 cut(s)	285, 2332
Bsp1286I	GDGCHC	6 cut(s)	666, 742, 1294, 1419, 1591, 1829
Bsp13I	TCCGGA	1 cut(s)	1545
Bsp1407I	TGTACA	3 cut(s)	655, 849, 2309
Bsp143I	GATC	5 cut(s)	844, 1888, 2137, 2464, 2724
Bsp19I	CCATGG	2 cut(s)	1209, 2145
BspANI	GGCC	4 cut(s)	21, 1539, 1768, 2009
BspCNI	CTCAG	7 cut(s)	208, 754, 874, 2014, 2399, 2489, 2518
BspEI	TCCGGA	1 cut(s)	1545
BspFNI	CGCG	6 cut(s)	124, 642, 720, 762, 1449, 1554
BspHI	TCATGA	2 cut(s)	46, 670
BspLI	GGNNCC	9 cut(s)	20, 259, 1550, 1980, 2189, 2190, 2367, 2397, 2726
BspMAI	CTGCAG	1 cut(s)	959
BspMI	ACCTGC	1 cut(s)	948
BspOI	GCTAGC	1 cut(s)	2568
BspPI	GGATC	5 cut(s)	852, 2132, 2459, 2719, 2732
BspT104I	TTCGAA	2 cut(s)	285, 2332
BspT107I	GGYRCC	2 cut(s)	2365, 2395
BsrBI	CCGCTC	1 cut(s)	1276
BsrDI	GCAATG	1 cut(s)	421
BsrFI	RCCGGY	1 cut(s)	2315
BsrGI	TGTACA	3 cut(s)	655, 849, 2309
BsrI	ACTGG	2 cut(s)	801, 1592
BssAI	RCCGGY	1 cut(s)	2315
BssECI	CCNNGG	4 cut(s)	563, 810, 1209, 2145
BssMI	GATC	5 cut(s)	844, 1888, 2137, 2464, 2724
BssNAI	GTATAC	1 cut(s)	319
BssT1I	CCWWGG	2 cut(s)	1209, 2145
Bst1107I	GTATAC	1 cut(s)	319
Bst2UI	CCWGG	3 cut(s)	156, 186, 2011
Bst6I	CTCTTC	4 cut(s)	192, 330, 939, 2490
BstAPI	GCANNNNNTGC	1 cut(s)	905
BstAUI	TGTACA	3 cut(s)	655, 849, 2309
BstBAI	YACGTR	1 cut(s)	1176
BstBI	TTCGAA	2 cut(s)	285, 2332
BstC8I	GCNNGC	8 cut(s)	533, 755, 807, 1460, 1464, 2047, 2216, 2566
BstDEI	CTNAG	9 cut(s)	111, 216, 648, 741, 882, 2001, 2386, 2476, 2526
BstDSI	CCRYGG	2 cut(s)	1209, 2145
BstFNI	CGCG	6 cut(s)	124, 642, 720, 762, 1449, 1554
BstH2I	RGCGCY	1 cut(s)	2565
BstHHI	GCGC	8 cut(s)	124, 224, 759, 764, 1034, 1449, 2304, 2564
BstKTI	GATC	5 cut(s)	847, 1891, 2140, 2467, 2727
BstMAI	GTCTC	1 cut(s)	1595
BstMBI	GATC	5 cut(s)	844, 1888, 2137, 2464, 2724
BstMWI	GCNNNNNNNGC	7 cut(s)	759, 905, 1282, 1455, 1468, 2006, 2211
BstNI	CCWGG	3 cut(s)	156, 186, 2011
BstNSI	RCATGY	3 cut(s)	1462, 1635, 2218
BstSCI	CCNGG	6 cut(s)	154, 184, 594, 809, 2009, 2287
BstSFI	CTRYAG	4 cut(s)	330, 955, 1027, 1128
BstSLI	GKGCMC	1 cut(s)	1419
BstSNI	TACGTA	1 cut(s)	1176
BstUI	CGCG	6 cut(s)	124, 642, 720, 762, 1449, 1554
BstV1I	GCAGC	5 cut(s)	892, 941, 1325, 2462, 2698
BstV2I	GAAGAC	3 cut(s)	294, 732, 1632
BstX2I	RGATCY	3 cut(s)	844, 2137, 2724
BstYI	RGATCY	3 cut(s)	844, 2137, 2724
BstZ17I	GTATAC	1 cut(s)	319
BsuI	GTATCC	1 cut(s)	1165
BsuRI	GGCC	4 cut(s)	21, 1539, 1768, 2009
BtgI	CCRYGG	2 cut(s)	1209, 2145
BtsI	GCAGTG	1 cut(s)	443
BtsIMutI	CAGTG	5 cut(s)	37, 443, 1306, 1743, 2238
BveI	ACCTGC	1 cut(s)	948
Cac8I	GCNNGC	8 cut(s)	533, 755, 807, 1460, 1464, 2047, 2216, 2566
CaiI	CAGNNNCTG	2 cut(s)	703, 2462
CciI	TCATGA	2 cut(s)	46, 670
CfoI	GCGC	8 cut(s)	124, 224, 759, 764, 1034, 1449, 2304, 2564
Cfr10I	RCCGGY	1 cut(s)	2315
Cfr13I	GGNCC	4 cut(s)	19, 258, 1978, 2188
CseI	GACGC	2 cut(s)	1438, 1637
CsiI	ACCWGGT	1 cut(s)	154
DdeI	CTNAG	9 cut(s)	111, 216, 648, 741, 882, 2001, 2386, 2476, 2526
DpnI	GATC	5 cut(s)	846, 1890, 2139, 2466, 2726
DpnII	GATC	5 cut(s)	844, 1888, 2137, 2464, 2724
DraIII	CACNNNGTG	1 cut(s)	2519
DriI	GACNNNNNGTC	1 cut(s)	1252
EaeI	YGGCCR	2 cut(s)	1537, 2007
Eam1104I	CTCTTC	4 cut(s)	192, 330, 939, 2490
Eam1105I	GACNNNNNGTC	1 cut(s)	1252
EarI	CTCTTC	4 cut(s)	192, 330, 939, 2490
Ecl136II	GAGCTC	1 cut(s)	1292
Eco105I	TACGTA	1 cut(s)	1176
Eco130I	CCWWGG	2 cut(s)	1209, 2145
Eco147I	AGGCCT	1 cut(s)	1768
Eco24I	GRGCYC	1 cut(s)	1294
Eco32I	GATATC	1 cut(s)	1907
Eco47I	GGWCC	3 cut(s)	258, 1978, 2188
Eco53kI	GAGCTC	1 cut(s)	1292
Eco57I	CTGAAG	3 cut(s)	1393, 1555, 2397
EcoICRI	GAGCTC	1 cut(s)	1292
EcoO109I	RGGNCCY	3 cut(s)	19, 1978, 2188
EcoRII	CCWGG	3 cut(s)	154, 184, 2009
EcoRV	GATATC	1 cut(s)	1907
EcoT14I	CCWWGG	2 cut(s)	1209, 2145
EcoT22I	ATGCAT	1 cut(s)	1360
EcoT38I	GRGCYC	1 cut(s)	1294
ErhI	CCWWGG	2 cut(s)	1209, 2145
FalI	AAGNNNNNCTT	5 cut(s)	38, 969, 1001, 1878, 1910
FaqI	GGGAC	9 cut(s)	407, 670, 828, 1019, 1657, 1964, 2201, 2402, 2444
FauI	CCCGC	3 cut(s)	1269, 2210, 2497
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	8 cut(s)	760, 906, 955, 1314, 1540, 2451, 2454, 2687
FriOI	GRGCYC	1 cut(s)	1294
Fsp4HI	GCNGC	8 cut(s)	760, 906, 955, 1314, 1540, 2451, 2454, 2687
FspBI	CTAG	4 cut(s)	777, 1497, 2108, 2565
GlaI	GCGC	8 cut(s)	123, 223, 758, 763, 1033, 1448, 2303, 2563
GluI	GCNGC	8 cut(s)	760, 906, 955, 1314, 1540, 2451, 2454, 2687
GsaI	CCCAGC	2 cut(s)	1447, 2614
GsuI	CTGGAG	1 cut(s)	1575
HaeII	RGCGCY	1 cut(s)	2565
HaeIII	GGCC	4 cut(s)	21, 1539, 1768, 2009
HapII	CCGG	6 cut(s)	596, 810, 1546, 1910, 2289, 2316
HgaI	GACGC	2 cut(s)	1438, 1637
HhaI	GCGC	8 cut(s)	124, 224, 759, 764, 1034, 1449, 2304, 2564
Hin6I	GCGC	8 cut(s)	122, 222, 757, 762, 1032, 1447, 2302, 2562
HinP1I	GCGC	8 cut(s)	122, 222, 757, 762, 1032, 1447, 2302, 2562
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	1 cut(s)	2379
HpaI	GTTAAC	1 cut(s)	589
HpaII	CCGG	6 cut(s)	596, 810, 1546, 1910, 2289, 2316
HphI	GGTGA	7 cut(s)	170, 174, 179, 1060, 1291, 1961, 2330
Hpy166II	GTNNAC	6 cut(s)	247, 319, 589, 772, 1179, 1644
Hpy8I	GTNNAC	6 cut(s)	247, 319, 589, 772, 1179, 1644
Hpy99I	CGWCG	6 cut(s)	720, 824, 1247, 1250, 1454, 1779
HpyCH4IV	ACGT	3 cut(s)	1175, 1930, 2178
HpyF10VI	GCNNNNNNNGC	7 cut(s)	759, 905, 1282, 1455, 1468, 2006, 2211
HpyF3I	CTNAG	9 cut(s)	111, 216, 648, 741, 882, 2001, 2386, 2476, 2526
HpySE526I	ACGT	3 cut(s)	1175, 1930, 2178
HspAI	GCGC	8 cut(s)	122, 222, 757, 762, 1032, 1447, 2302, 2562
KflI	GGGWCCC	1 cut(s)	2188
Kpn2I	TCCGGA	1 cut(s)	1545
KpnI	GGTACC	2 cut(s)	2369, 2399
KspAI	GTTAAC	1 cut(s)	589
Kzo9I	GATC	5 cut(s)	844, 1888, 2137, 2464, 2724
LmnI	GCTCC	5 cut(s)	631, 661, 1594, 1832, 2539
Lsp1109I	GCAGC	5 cut(s)	892, 941, 1325, 2462, 2698
LweI	GCATC	5 cut(s)	886, 1272, 1551, 2269, 2615
MabI	ACCWGGT	1 cut(s)	154
MaeI	CTAG	4 cut(s)	777, 1497, 2108, 2565
MaeII	ACGT	3 cut(s)	1175, 1930, 2178
MaeIII	GTNAC	6 cut(s)	32, 115, 643, 1865, 2521, 2680
MalI	GATC	5 cut(s)	846, 1890, 2139, 2466, 2726
MbiI	CCGCTC	1 cut(s)	1276
MboI	GATC	5 cut(s)	844, 1888, 2137, 2464, 2724
MfeI	CAATTG	1 cut(s)	1326
MflI	RGATCY	3 cut(s)	844, 2137, 2724
MhlI	GDGCHC	6 cut(s)	666, 742, 1294, 1419, 1591, 1829
MlsI	TGGCCA	1 cut(s)	2009
MluCI	AATT	9 cut(s)	84, 170, 346, 1075, 1326, 1971, 2053, 2096, 2588
MluNI	TGGCCA	1 cut(s)	2009
MlyI	GAGTC	4 cut(s)	408, 947, 1214, 1262
MmeI	TCCRAC	2 cut(s)	1329, 1913
Mox20I	TGGCCA	1 cut(s)	2009
Mph1103I	ATGCAT	1 cut(s)	1360
MroI	TCCGGA	1 cut(s)	1545
MroXI	GAANNNNTTC	2 cut(s)	281, 2328
MscI	TGGCCA	1 cut(s)	2009
MseI	TTAA	4 cut(s)	588, 1668, 1974, 2051
MslI	CAYNNNNRTG	4 cut(s)	669, 822, 917, 1184
Msp20I	TGGCCA	1 cut(s)	2009
MspA1I	CMGCKG	2 cut(s)	268, 2689
MspI	CCGG	6 cut(s)	596, 810, 1546, 1910, 2289, 2316
MspR9I	CCNGG	6 cut(s)	156, 186, 596, 811, 2011, 2289
MteI	GCGCNGCGC	1 cut(s)	760
MunI	CAATTG	1 cut(s)	1326
Mva1269I	GAATGC	2 cut(s)	1403, 2614
MvaI	CCWGG	3 cut(s)	156, 186, 2011
MvnI	CGCG	6 cut(s)	124, 642, 720, 762, 1449, 1554
MwoI	GCNNNNNNNGC	7 cut(s)	759, 905, 1282, 1455, 1468, 2006, 2211
NciI	CCSGG	3 cut(s)	596, 811, 2289
NcoI	CCATGG	2 cut(s)	1209, 2145
NdeII	GATC	5 cut(s)	844, 1888, 2137, 2464, 2724
NheI	GCTAGC	1 cut(s)	2564
NlaIV	GGNNCC	9 cut(s)	20, 259, 1550, 1980, 2189, 2190, 2367, 2397, 2726
NmeAIII	GCCGAG	1 cut(s)	1273
NmuCI	GTSAC	3 cut(s)	32, 643, 1865
NsiI	ATGCAT	1 cut(s)	1360
NspI	RCATGY	3 cut(s)	1462, 1635, 2218
NspV	TTCGAA	2 cut(s)	285, 2332
OliI	CACNNNNGTG	2 cut(s)	822, 1184
PaeI	GCATGC	2 cut(s)	1462, 2218
PagI	TCATGA	2 cut(s)	46, 670
PceI	AGGCCT	1 cut(s)	1768
PctI	GAATGC	2 cut(s)	1403, 2614
PdmI	GAANNNNTTC	2 cut(s)	281, 2328
PfeI	GAWTC	6 cut(s)	71, 91, 161, 1844, 1952, 2351
PflFI	GACNNNGTC	1 cut(s)	398
PflMI	CCANNNNNTGG	2 cut(s)	915, 1932
PkrI	GCNGC	8 cut(s)	761, 907, 956, 1315, 1541, 2452, 2455, 2688
PleI	GAGTC	4 cut(s)	407, 946, 1213, 1261
PpsI	GAGTC	4 cut(s)	407, 946, 1213, 1261
Ppu21I	YACGTR	1 cut(s)	1176
PpuMI	RGGWCCY	2 cut(s)	1978, 2188
PsiI	TTATAA	2 cut(s)	1218, 1367
Psp124BI	GAGCTC	1 cut(s)	1294
Psp1406I	AACGTT	2 cut(s)	1930, 2178
Psp5II	RGGWCCY	2 cut(s)	1978, 2188
Psp6I	CCWGG	3 cut(s)	154, 184, 2009
PspFI	CCCAGC	2 cut(s)	1443, 2610
PspGI	CCWGG	3 cut(s)	154, 184, 2009
PspN4I	GGNNCC	9 cut(s)	20, 259, 1550, 1980, 2189, 2190, 2367, 2397, 2726
PspPI	GGNCC	4 cut(s)	19, 258, 1978, 2188
PspPPI	RGGWCCY	2 cut(s)	1978, 2188
PstI	CTGCAG	1 cut(s)	959
PstNI	CAGNNNCTG	2 cut(s)	703, 2462
PsuI	RGATCY	3 cut(s)	844, 2137, 2724
PsyI	GACNNNGTC	1 cut(s)	398
PvuII	CAGCTG	2 cut(s)	268, 2689
RseI	CAYNNNNRTG	4 cut(s)	669, 822, 917, 1184
SacI	GAGCTC	1 cut(s)	1294
SaqAI	TTAA	4 cut(s)	588, 1668, 1974, 2051
SatI	GCNGC	8 cut(s)	760, 906, 955, 1314, 1540, 2451, 2454, 2687
Sau3AI	GATC	5 cut(s)	844, 1888, 2137, 2464, 2724
Sau96I	GGNCC	4 cut(s)	19, 258, 1978, 2188
SchI	GAGTC	4 cut(s)	408, 947, 1214, 1262
ScrFI	CCNGG	6 cut(s)	156, 186, 596, 811, 2011, 2289
SduI	GDGCHC	6 cut(s)	666, 742, 1294, 1419, 1591, 1829
SexAI	ACCWGGT	1 cut(s)	154
SfaNI	GCATC	5 cut(s)	886, 1272, 1551, 2269, 2615
SfcI	CTRYAG	4 cut(s)	330, 955, 1027, 1128
SfuI	TTCGAA	2 cut(s)	285, 2332
SinI	GGWCC	3 cut(s)	258, 1978, 2188
SmiMI	CAYNNNNRTG	4 cut(s)	669, 822, 917, 1184
SmlI	CTYRAG	2 cut(s)	1202, 2119
SmoI	CTYRAG	2 cut(s)	1202, 2119
SnaBI	TACGTA	1 cut(s)	1176
SpeI	ACTAGT	1 cut(s)	776
SphI	GCATGC	2 cut(s)	1462, 2218
Sse9I	AATT	9 cut(s)	84, 170, 346, 1075, 1326, 1971, 2053, 2096, 2588
SseBI	AGGCCT	1 cut(s)	1768
SspMI	CTAG	4 cut(s)	777, 1497, 2108, 2565
SstI	GAGCTC	1 cut(s)	1294
StuI	AGGCCT	1 cut(s)	1768
StyD4I	CCNGG	6 cut(s)	154, 184, 594, 809, 2009, 2287
StyI	CCWWGG	2 cut(s)	1209, 2145
TaiI	ACGT	3 cut(s)	1178, 1933, 2181
TaqI	TCGA	6 cut(s)	89, 285, 545, 613, 1452, 2332
TasI	AATT	9 cut(s)	84, 170, 346, 1075, 1326, 1971, 2053, 2096, 2588
TatI	WGTACW	4 cut(s)	360, 655, 849, 2309
TauI	GCSGC	3 cut(s)	762, 1542, 2456
TfiI	GAWTC	6 cut(s)	71, 91, 161, 1844, 1952, 2351
Tru1I	TTAA	4 cut(s)	588, 1668, 1974, 2051
Tru9I	TTAA	4 cut(s)	588, 1668, 1974, 2051
TscAI	CASTG	5 cut(s)	37, 443, 1306, 1743, 2245
TseFI	GTSAC	3 cut(s)	32, 643, 1865
TseI	GCWGC	5 cut(s)	905, 954, 1313, 2450, 2686
Tsp45I	GTSAC	3 cut(s)	32, 643, 1865
TspGWI	ACGGA	1 cut(s)	1098
TspRI	CASTG	5 cut(s)	37, 443, 1306, 1743, 2245
Tth111I	GACNNNGTC	1 cut(s)	398
Van91I	CCANNNNNTGG	2 cut(s)	915, 1932
VpaK11BI	GGWCC	3 cut(s)	258, 1978, 2188
XapI	RAATTY	4 cut(s)	84, 346, 1075, 2096
XceI	RCATGY	3 cut(s)	1462, 1635, 2218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2718
XmiI	GTMKAC	1 cut(s)	318
XmnI	GAANNNNTTC	2 cut(s)	281, 2328
XspI	CTAG	4 cut(s)	777, 1497, 2108, 2565
Zsp2I	ATGCAT	1 cut(s)	1360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.