Rroxscaffold_7G00179190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0005562
Physical Location & Seq
Forward (+)
18808628 .. 18816487
7860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00179190.1

Sequence Viewer

Length: 414 bp
ATGTTCTTGGCTGGAAACAAGGCTGACTTGGAAGAGAAGAGAAAAGTAGGGATTGAGGAGCATCCTCATTGCTGGGCTGATGCTGCTGCATGTGCTCTTCCAGGACCCGTAGCTGTTCTAGGGTTGGATTCCATCGGGAACTTCGCTGCTGAGCTGCAGAGGCGGGTTGGTGATCAATATAGCAATAATCACCGCCACTTCTGCCTTGCACAGACGACGCCCGACCGGCCACTGAATCATCTTCAGTTGCAAAAGAGGAAGAGCATGGGGACCGGCAATTACTCCGGTCAATTGGTGGAGCAATCCTTCTCGGCTACACCGACCTCGAAAGCACAACGAACAAACGCATCAGCTACACTAATACACACAAAACTCTTGGACTATCATCACCACCATTACGATGTATGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.2

Weight (kDa)

8.39

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 163, 193
AcoI YGGCCR 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 227
AcyI GRCGYC 1 cut(s) 218
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 3 cut(s) 113, 154, 353
AluI AGCT 3 cut(s) 113, 154, 353
Alw21I GWGCWC 1 cut(s) 97
AoxI GGCC 1 cut(s) 227
ApeKI GCWGC 4 cut(s) 83, 86, 146, 154
AspS9I GGNCC 2 cut(s) 104, 270
AsuHPI GGTGA 3 cut(s) 182, 182, 380
AvaII GGWCC 2 cut(s) 104, 270
Bbv12I GWGCWC 1 cut(s) 97
BbvI GCAGC 4 cut(s) 70, 73, 133, 141
BccI CCATC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 102
BclI TGATCA 1 cut(s) 172
BfaI CTAG 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 155
BglI GCCNNNNNGGC 1 cut(s) 226
BisI GCNGC 4 cut(s) 84, 87, 147, 155
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 4 cut(s) 85, 88, 148, 156
Bme1390I CCNGG 1 cut(s) 102
Bme18I GGWCC 2 cut(s) 104, 270
BmgT120I GGNCC 2 cut(s) 104, 270
BmiI GGNNCC 2 cut(s) 106, 271
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 3 cut(s) 70, 70, 356
Bpu1102I GCTNAGC 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 218
BsaWI WCCGGW 1 cut(s) 284
Bse118I RCCGGY 2 cut(s) 225, 272
Bse3DI GCAATG 1 cut(s) 67
BseBI CCWGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 141
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 4 cut(s) 70, 73, 133, 141
BseYI CCCAGC 1 cut(s) 72
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 1 cut(s) 229
BsiEI CGRYCG 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 97
BsiSI CCGG 3 cut(s) 226, 273, 285
BslFI GGGAC 1 cut(s) 283
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 1 cut(s) 229
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 1 cut(s) 172
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 2 cut(s) 163, 193
BspANI GGCC 1 cut(s) 229
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 106, 271
BspMAI CTGCAG 1 cut(s) 159
BspQI GCTCTTC 2 cut(s) 102, 254
BsrDI GCAATG 1 cut(s) 67
BsrFI RCCGGY 2 cut(s) 225, 272
BssAI RCCGGY 2 cut(s) 225, 272
BssMI GATC 1 cut(s) 172
BssNI GRCGYC 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 102
Bst6I CTCTTC 4 cut(s) 27, 32, 102, 254
BstACI GRCGYC 1 cut(s) 218
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMCI CGRYCG 1 cut(s) 226
BstMWI GCNNNNNNNGC 5 cut(s) 83, 92, 160, 201, 226
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 100
BstSFI CTRYAG 1 cut(s) 155
BstV1I GCAGC 4 cut(s) 70, 73, 133, 141
BsuRI GGCC 1 cut(s) 229
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 230
Cfr10I RCCGGY 2 cut(s) 225, 272
Cfr13I GGNCC 2 cut(s) 104, 270
CseI GACGC 1 cut(s) 226
CviAII CATG 2 cut(s) 90, 265
CviJI RGCY 8 cut(s) 11, 23, 77, 113, 154, 229, 314, 353
CviKI_1 RGCY 8 cut(s) 11, 23, 77, 113, 154, 229, 314, 353
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EaeI YGGCCR 1 cut(s) 227
Eam1104I CTCTTC 4 cut(s) 27, 32, 102, 254
EarI CTCTTC 4 cut(s) 27, 32, 102, 254
Eco47I GGWCC 2 cut(s) 104, 270
Eco57I CTGAAG 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 104
EcoRII CCWGG 1 cut(s) 100
FaeI CATG 2 cut(s) 93, 268
FaiI YATR 4 cut(s) 91, 180, 266, 406
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FaqI GGGAC 1 cut(s) 283
FatI CATG 2 cut(s) 89, 264
FauI CCCGC 1 cut(s) 156
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 4 cut(s) 84, 87, 147, 155
FokI GGATG 1 cut(s) 48
Fsp4HI GCNGC 4 cut(s) 84, 87, 147, 155
FspBI CTAG 1 cut(s) 119
GluI GCNGC 4 cut(s) 84, 87, 147, 155
GsaI CCCAGC 1 cut(s) 76
HaeIII GGCC 1 cut(s) 229
HapII CCGG 3 cut(s) 226, 273, 285
HgaI GACGC 1 cut(s) 226
Hin1I GRCGYC 1 cut(s) 218
Hin1II CATG 2 cut(s) 93, 268
HinfI GANTC 2 cut(s) 128, 235
HpaII CCGG 3 cut(s) 226, 273, 285
HphI GGTGA 3 cut(s) 182, 182, 380
Hpy188III TCNNGA 1 cut(s) 136
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 316
HpyCH4V TGCA 4 cut(s) 89, 157, 209, 250
HpyF10VI GCNNNNNNNGC 5 cut(s) 83, 92, 160, 201, 226
HpyF3I CTNAG 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 218
Hsp92II CATG 2 cut(s) 93, 268
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 1 cut(s) 172
LguI GCTCTTC 2 cut(s) 102, 254
LmnI GCTCC 2 cut(s) 58, 298
LpnPI CCDG 6 cut(s) 58, 87, 114, 239, 286, 298
Lsp1109I GCAGC 4 cut(s) 70, 73, 133, 141
LweI GCATC 3 cut(s) 70, 70, 356
MaeI CTAG 1 cut(s) 119
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 5 cut(s) 44, 49, 89, 233, 271
MfeI CAATTG 1 cut(s) 290
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 2 cut(s) 277, 290
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 5 cut(s) 49, 75, 153, 249, 334
MslI CAYNNNNRTG 1 cut(s) 399
MspI CCGG 3 cut(s) 226, 273, 285
MspR9I CCNGG 1 cut(s) 102
MunI CAATTG 1 cut(s) 290
MvaI CCWGG 1 cut(s) 102
MwoI GCNNNNNNNGC 5 cut(s) 83, 92, 160, 201, 226
NdeII GATC 1 cut(s) 172
NlaIII CATG 2 cut(s) 93, 268
NlaIV GGNNCC 2 cut(s) 106, 271
NmeAIII GCCGAG 1 cut(s) 290
NspI RCATGY 1 cut(s) 93
PciSI GCTCTTC 2 cut(s) 102, 254
PcsI WCGNNNNNNNCGW 1 cut(s) 317
PfeI GAWTC 2 cut(s) 128, 235
PfoI TCCNGGA 1 cut(s) 100
PkrI GCNGC 4 cut(s) 85, 88, 148, 156
PpuMI RGGWCCY 1 cut(s) 104
Psp5II RGGWCCY 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 100
PspFI CCCAGC 1 cut(s) 72
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 106, 271
PspPI GGNCC 2 cut(s) 104, 270
PspPPI RGGWCCY 1 cut(s) 104
PstI CTGCAG 1 cut(s) 159
RseI CAYNNNNRTG 1 cut(s) 399
SapI GCTCTTC 2 cut(s) 102, 254
SatI GCNGC 4 cut(s) 84, 87, 147, 155
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 2 cut(s) 104, 270
ScrFI CCNGG 1 cut(s) 102
SduI GDGCHC 1 cut(s) 97
SetI ASST 4 cut(s) 115, 156, 326, 355
SfaNI GCATC 3 cut(s) 70, 70, 356
SfcI CTRYAG 1 cut(s) 155
SinI GGWCC 2 cut(s) 104, 270
SmiMI CAYNNNNRTG 1 cut(s) 399
Sse9I AATT 2 cut(s) 277, 290
SsiI CCGC 2 cut(s) 163, 193
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 100
TaqI TCGA 1 cut(s) 326
TasI AATT 2 cut(s) 277, 290
TfiI GAWTC 2 cut(s) 128, 235
TscAI CASTG 1 cut(s) 237
TseI GCWGC 4 cut(s) 83, 86, 146, 154
TspRI CASTG 1 cut(s) 237
VpaK11BI GGWCC 2 cut(s) 104, 270
XceI RCATGY 1 cut(s) 93
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.