Rh3CG030200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0005562
Physical Location & Seq
Forward (+)
2074315 .. 2075226
912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG030200.1

Sequence Viewer

Length: 522 bp
ATGTCCATACCTCAGTATCAGTCAAAGGAACAACAACTTTGGAGTAACAAAGAATCTGCCGGAGCTGCAGGACTGAGAAGGTCAAGTACTCTTGAAATTGAGCACCAGAATAAATGGATACTGTCAAACTGCGGTGTTCTTGTTGATCAGGAATTATCTCCAGGGCTGCGAAAGAGGATGAGCATGGTAACGGGCAATTACTCCGGTCAATTGGAGGAGCAATCCTATTCGGCTACACTGACCTCGGAAGCACAACGAACAAACGCATCAGCTACATTAATATACCCAAAGCTCTTCGACTATCATCATCCCCATTATGATTATGATTACGGTATGGTGTTGAGTGCACCCAATATTTACAAAGGAGCAGAAAGTAGATTAGAATCTCAAACTCTGGAGCTCTTTCCACTTGAGAGCGGCAATGTTAAGGGTGTTAATGATACCAAATCACCAATGATTAGAACCACAAACACAGACAGTAATGAAGATTTCATGGCAGACCAATATTTTCAATTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

19.61

Weight (kDa)

5.19

Isoelectric Point (pI)

62.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 417
AciI CCGC 2 cut(s) 132, 417
AfaI GTAC 1 cut(s) 88
AgsI TTSAA 2 cut(s) 95, 512
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 4 cut(s) 65, 272, 292, 400
AluI AGCT 4 cut(s) 65, 272, 292, 400
Alw21I GWGCWC 3 cut(s) 105, 349, 402
Alw44I GTGCAC 1 cut(s) 345
ApaLI GTGCAC 1 cut(s) 345
ApeKI GCWGC 2 cut(s) 65, 166
AseI ATTAAT 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 441
BaeGI GKGCMC 1 cut(s) 349
BaeI ACNNNNGTAYC 1 cut(s) 32
BanII GRGCYC 1 cut(s) 402
BarI GAAGNNNNNNTAC 2 cut(s) 70, 102
Bbv12I GWGCWC 3 cut(s) 105, 349, 402
BbvI GCAGC 2 cut(s) 52, 153
BciT130I CCWGG 1 cut(s) 162
BciVI GTATCC 1 cut(s) 111
BclI TGATCA 1 cut(s) 145
BfmI CTRYAG 1 cut(s) 66
BfuI GTATCC 1 cut(s) 111
BisI GCNGC 3 cut(s) 66, 167, 418
BlsI GCNGC 3 cut(s) 67, 168, 419
BmcAI AGTACT 1 cut(s) 88
Bme1390I CCNGG 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 275
BpmI CTGGAG 2 cut(s) 144, 416
BpuEI CTTGAG 1 cut(s) 431
BsaBI GATNNNNATC 1 cut(s) 382
BsaJI CCNNGG 2 cut(s) 161, 243
BsaWI WCCGGW 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 427
Bse8I GATNNNNATC 1 cut(s) 382
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 2 cut(s) 161, 243
BseGI GGATG 2 cut(s) 183, 307
BseJI GATNNNNATC 1 cut(s) 382
BseMI GCAATG 1 cut(s) 427
BseMII CTCAG 2 cut(s) 26, 65
BseRI GAGGAG 1 cut(s) 230
BseSI GKGCMC 1 cut(s) 349
BseXI GCAGC 2 cut(s) 52, 153
BsiHKAI GWGCWC 3 cut(s) 105, 349, 402
BsiSI CCGG 2 cut(s) 60, 204
Bsp1286I GDGCHC 3 cut(s) 105, 349, 402
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 2 cut(s) 132, 417
BspCNI CTCAG 2 cut(s) 25, 66
BspMAI CTGCAG 1 cut(s) 70
BspQI GCTCTTC 1 cut(s) 299
BsrBI CCGCTC 1 cut(s) 417
BsrDI GCAATG 1 cut(s) 427
BssECI CCNNGG 2 cut(s) 161, 243
BssMI GATC 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 3 cut(s) 123, 332, 479
Bst6I CTCTTC 1 cut(s) 299
BstDEI CTNAG 2 cut(s) 12, 74
BstF5I GGATG 2 cut(s) 183, 307
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 66
BstSLI GKGCMC 1 cut(s) 349
BstV1I GCAGC 2 cut(s) 52, 153
BsuI GTATCC 1 cut(s) 111
BtsCI GGATG 2 cut(s) 183, 307
BtsIMutI CAGTG 1 cut(s) 236
Csp6I GTAC 1 cut(s) 87
CviAII CATG 2 cut(s) 184, 493
CviJI RGCY 6 cut(s) 65, 166, 233, 272, 292, 400
CviKI_1 RGCY 6 cut(s) 65, 166, 233, 272, 292, 400
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 2 cut(s) 12, 74
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 299
EarI CTCTTC 1 cut(s) 299
Ecl136II GAGCTC 1 cut(s) 400
Eco24I GRGCYC 1 cut(s) 402
Eco53kI GAGCTC 1 cut(s) 400
EcoICRI GAGCTC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 402
FaeI CATG 2 cut(s) 187, 496
FaiI YATR 7 cut(s) 8, 185, 283, 318, 324, 335, 494
FatI CATG 2 cut(s) 183, 492
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 3 cut(s) 66, 167, 418
FokI GGATG 2 cut(s) 190, 294
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 3 cut(s) 66, 167, 418
GluI GCNGC 3 cut(s) 66, 167, 418
GsuI CTGGAG 2 cut(s) 144, 416
HapII CCGG 2 cut(s) 60, 204
Hin1II CATG 2 cut(s) 187, 496
HinfI GANTC 2 cut(s) 53, 383
HpaII CCGG 2 cut(s) 60, 204
HphI GGTGA 1 cut(s) 441
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 1 cut(s) 247
Hpy188III TCNNGA 3 cut(s) 92, 149, 395
Hpy8I GTNNAC 1 cut(s) 347
HpyAV CCTTC 1 cut(s) 72
HpyCH4III ACNGT 3 cut(s) 123, 332, 479
HpyCH4V TGCA 2 cut(s) 68, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 2 cut(s) 12, 74
Hsp92II CATG 2 cut(s) 187, 496
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 1 cut(s) 145
LguI GCTCTTC 1 cut(s) 299
LmnI GCTCC 4 cut(s) 62, 217, 365, 397
LpnPI CCDG 8 cut(s) 54, 73, 119, 134, 147, 174, 217, 380
Lsp1109I GCAGC 2 cut(s) 52, 153
LweI GCATC 1 cut(s) 275
MaeIII GTNAC 2 cut(s) 44, 187
MalI GATC 1 cut(s) 147
MbiI CCGCTC 1 cut(s) 417
MboI GATC 1 cut(s) 145
MboII GAAGA 2 cut(s) 286, 497
MfeI CAATTG 1 cut(s) 209
MhlI GDGCHC 3 cut(s) 105, 349, 402
MluCI AATT 5 cut(s) 96, 152, 196, 209, 512
MnlI CCTC 4 cut(s) 21, 168, 208, 253
MseI TTAA 3 cut(s) 278, 426, 435
MspI CCGG 2 cut(s) 60, 204
MspR9I CCNGG 1 cut(s) 162
MunI CAATTG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 1 cut(s) 145
NlaIII CATG 2 cut(s) 187, 496
PciSI GCTCTTC 1 cut(s) 299
PfeI GAWTC 2 cut(s) 53, 383
PkrI GCNGC 3 cut(s) 67, 168, 419
PshBI ATTAAT 1 cut(s) 278
Psp124BI GAGCTC 1 cut(s) 402
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PstI CTGCAG 1 cut(s) 70
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SacI GAGCTC 1 cut(s) 402
SapI GCTCTTC 1 cut(s) 299
SaqAI TTAA 3 cut(s) 278, 426, 435
SatI GCNGC 3 cut(s) 66, 167, 418
Sau3AI GATC 1 cut(s) 145
ScaI AGTACT 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 3 cut(s) 105, 349, 402
SetI ASST 7 cut(s) 13, 67, 83, 245, 274, 294, 402
SfaNI GCATC 1 cut(s) 275
SfcI CTRYAG 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
Sse9I AATT 5 cut(s) 96, 152, 196, 209, 512
SsiI CCGC 2 cut(s) 132, 417
SspI AATATT 2 cut(s) 355, 506
SstI GAGCTC 1 cut(s) 402
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 3 cut(s) 123, 332, 479
TaqI TCGA 1 cut(s) 297
TasI AATT 5 cut(s) 96, 152, 196, 209, 512
TatI WGTACW 1 cut(s) 86
TauI GCSGC 1 cut(s) 420
TfiI GAWTC 2 cut(s) 53, 383
Tru1I TTAA 3 cut(s) 278, 426, 435
Tru9I TTAA 3 cut(s) 278, 426, 435
TscAI CASTG 1 cut(s) 243
TseI GCWGC 2 cut(s) 65, 166
TspDTI ATGAA 2 cut(s) 481, 498
TspRI CASTG 1 cut(s) 243
VneI GTGCAC 1 cut(s) 345
VspI ATTAAT 1 cut(s) 278
ZrmI AGTACT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.