Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005562

Physical Location & Seq

Genomic Coordinates Reverse (-)

47753148 .. 47755187

Gene Structure 2040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025703

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAACAATAATAGGGATATGCATGAGGATGACCGCTACTCTATCAAAGCTGCAAATGTTCATGAGCCCGCTGCAGAAGTAGCATTCACTCCAAAGTTTAGCGCTACTTCCAACATGACCCAAAGTTATGAGTCATCATTCAACCAGCACCATCATCAGGTGGTTGGAGTGACGCCGTCGCAAGGCAGAAGTGGCGGTGATTATTGCTACAATGGTCACCAACCCTCCTCCGCAGTTTCTCAGCAAAGTTCCCGATGGAATCCAACCCCAGAGCAGTTACGGGTCCTGGAAGAGCTGTATGGACATGGATTAAAGACACCAACGGCACAACAAATCCGACAAGTGACTGCGCAGCTTCAACACTTTGGAAAGATTGAATACAAGAATGTCTTCTACTGGTTTCAGAACCACCGAGCGAGGGAGAGACAGAAGAGACGACATGAACTCATGTCCATGCCTCAGTATCACTCTAAGGAAAAACAACTTTGGAGCAACAAAGAATCTGCAGGAGGACAGAGAAGGTCAAGTACTCTTGAAATTGAGCACCAGAATAAATGGACACTATCAAACTGCGGTATTCTTGCTGATCAGGAATTATCTTCAGTGCTGCAAAAGAGGATGAGCATGGTGACCGGCAATTACTCCGGTCAATTGGAGGAGCAATCCTATTTGGCTACACCGACCTCGGAAGCACAACAAACAAACGCATCAGCTACATTAATATACACAAAGCTCTTGGACTATCATCATCCCCATTATGATAATGTTTACGGTATGGTGTTGACTGCACCCAATATTTACGAAGAAGCAGAAAGTAGATTAGAAACTCAAACTCTGGAGCTCTTTCCACTTGAGAGCGACAATGTTAAGGGTGTTATGGATACCGAATCACCTATGATCAGAACCACAAACACAGACAGTAAGGAAGATTTCATGGCATACCAATATTTTCAATTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

321

Amino Acids

36.88

Weight (kDa)

6.1

Isoelectric Point (pI)

60.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	84 - 143	2.5e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005562)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450741 RchiOBHm_Chr3g0450831 RchiOBHm_Chr3g0450921 RchiOBHm_Chr3g0450931
rosa_laevigata	RLG00000025699 RLG00000025703 RLG00000025706
rosa_multiflora	Rmu_sc0000078.1_g000007
rosa_roxburghii	Rroxscaffold_6G00428400 Rroxscaffold_6G00428530 Rroxscaffold_7G00179190
rosa_rugosa	Rorug02G0630300 Rorug02G0630700
rosa_samantha	Rh3AG031000 Rh3AG031300 Rh3AG032100 Rh3AG033000 Rh3BG031400 Rh3BG031800 Rh3BG032500 Rh3BG033300 Rh3CG030200 Rh3CG030600 Rh3CG031200 Rh3CG032100 Rh3DG031200 Rh3DG031500 Rh3DG032100 Rh3DG033100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	351
AciI	CCGC	5 cut(s)	34, 69, 195, 231, 573
AcuI	CTGAAG	1 cut(s)	585
AcyI	GRCGYC	1 cut(s)	173
AfaI	GTAC	1 cut(s)	529
AfeI	AGCGCT	1 cut(s)	103
AfiI	CCNNNNNNNGG	3 cut(s)	157, 182, 418
AgsI	TTSAA	5 cut(s)	142, 359, 377, 536, 953
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	6 cut(s)	50, 295, 355, 713, 733, 841
AluI	AGCT	6 cut(s)	50, 295, 355, 713, 733, 841
Alw21I	GWGCWC	2 cut(s)	546, 843
Alw26I	GTCTC	2 cut(s)	418, 427
Aor51HI	AGCGCT	1 cut(s)	103
ApeKI	GCWGC	4 cut(s)	50, 71, 352, 607
AseI	ATTAAT	1 cut(s)	719
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	2 cut(s)	104, 352
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	4 cut(s)	209, 209, 640, 882
AvaII	GGWCC	1 cut(s)	283
BanII	GRGCYC	2 cut(s)	69, 843
BarI	GAAGNNNNNNTAC	2 cut(s)	511, 543
BbsI	GAAGAC	1 cut(s)	382
Bbv12I	GWGCWC	2 cut(s)	546, 843
BbvI	GCAGC	4 cut(s)	37, 58, 364, 594
BccI	CCATC	2 cut(s)	159, 249
BceAI	ACGGC	2 cut(s)	160, 339
BciT130I	CCWGG	1 cut(s)	287
BciVI	GTATCC	1 cut(s)	874
BclI	TGATCA	2 cut(s)	586, 897
BcoDI	GTCTC	2 cut(s)	418, 427
BfmI	CTRYAG	2 cut(s)	72, 504
BfoI	RGCGCY	1 cut(s)	105
BfuI	GTATCC	1 cut(s)	874
BisI	GCNGC	4 cut(s)	51, 72, 353, 608
BlsI	GCNGC	4 cut(s)	52, 73, 354, 609
BmcAI	AGTACT	1 cut(s)	529
Bme1390I	CCNGG	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	716
BpiI	GAAGAC	1 cut(s)	382
BpmI	CTGGAG	1 cut(s)	857
BpuEI	CTTGAG	1 cut(s)	872
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	684
BsaWI	WCCGGW	1 cut(s)	644
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 182, 418
Bse118I	RCCGGY	1 cut(s)	632
Bse1I	ACTGG	1 cut(s)	401
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	684
BseGI	GGATG	3 cut(s)	34, 624, 748
BseLI	CCNNNNNNNGG	3 cut(s)	157, 182, 418
BseMII	CTCAG	2 cut(s)	254, 473
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	2 cut(s)	217, 671
BseXI	GCAGC	4 cut(s)	37, 58, 364, 594
BsgI	GTGCAG	1 cut(s)	771
BsiHKAI	GWGCWC	2 cut(s)	546, 843
BsiSI	CCGG	2 cut(s)	633, 645
BslI	CCNNNNNNNGG	3 cut(s)	157, 182, 418
BsmAI	GTCTC	2 cut(s)	418, 427
BsmBI	CGTCTC	1 cut(s)	427
BsmI	GAATGC	1 cut(s)	83
Bsp1286I	GDGCHC	3 cut(s)	69, 546, 843
Bsp143I	GATC	2 cut(s)	586, 897
BspACI	CCGC	5 cut(s)	34, 69, 195, 231, 573
BspCNI	CTCAG	2 cut(s)	253, 472
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	284
BspMAI	CTGCAG	2 cut(s)	76, 508
BspQI	GCTCTTC	1 cut(s)	285
BsrFI	RCCGGY	1 cut(s)	632
BsrI	ACTGG	1 cut(s)	401
BssAI	RCCGGY	1 cut(s)	632
BssECI	CCNNGG	1 cut(s)	684
BssMI	GATC	2 cut(s)	586, 897
BssNI	GRCGYC	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	2 cut(s)	773, 920
Bst6I	CTCTTC	2 cut(s)	285, 425
BstACI	GRCGYC	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	3 cut(s)	240, 459, 471
BstEII	GGTNACC	2 cut(s)	215, 628
BstF5I	GGATG	3 cut(s)	34, 624, 748
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	2 cut(s)	104, 352
BstKTI	GATC	2 cut(s)	589, 900
BstMAI	GTCTC	2 cut(s)	418, 427
BstMBI	GATC	2 cut(s)	586, 897
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 192
BstNI	CCWGG	1 cut(s)	287
BstPI	GGTNACC	2 cut(s)	215, 628
BstSCI	CCNGG	1 cut(s)	285
BstSFI	CTRYAG	2 cut(s)	72, 504
BstV1I	GCAGC	4 cut(s)	37, 58, 364, 594
BstV2I	GAAGAC	1 cut(s)	382
BsuI	GTATCC	1 cut(s)	874
BtsCI	GGATG	3 cut(s)	34, 624, 748
BtsIMutI	CAGTG	1 cut(s)	609
Cac8I	GCNNGC	1 cut(s)	69
CciI	TCATGA	1 cut(s)	61
CfoI	GCGC	2 cut(s)	104, 352
Cfr10I	RCCGGY	1 cut(s)	632
Cfr13I	GGNCC	1 cut(s)	283
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	528
CviAII	CATG	9 cut(s)	23, 62, 115, 305, 440, 448, 454, 625, 934
CviJI	RGCY	8 cut(s)	50, 67, 295, 355, 674, 713, 733, 841
CviKI_1	RGCY	8 cut(s)	50, 67, 295, 355, 674, 713, 733, 841
CviQI	GTAC	1 cut(s)	528
DdeI	CTNAG	3 cut(s)	240, 459, 471
DpnI	GATC	2 cut(s)	588, 899
DpnII	GATC	2 cut(s)	586, 897
Eam1104I	CTCTTC	2 cut(s)	285, 425
EarI	CTCTTC	2 cut(s)	285, 425
Ecl136II	GAGCTC	1 cut(s)	841
Eco24I	GRGCYC	2 cut(s)	69, 843
Eco47I	GGWCC	1 cut(s)	283
Eco47III	AGCGCT	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	841
Eco57I	CTGAAG	1 cut(s)	585
Eco91I	GGTNACC	2 cut(s)	215, 628
EcoICRI	GAGCTC	1 cut(s)	841
EcoO109I	RGGNCCY	1 cut(s)	283
EcoO65I	GGTNACC	2 cut(s)	215, 628
EcoRII	CCWGG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	24
EcoT38I	GRGCYC	2 cut(s)	69, 843
Esp3I	CGTCTC	1 cut(s)	427
FaeI	CATG	9 cut(s)	26, 65, 118, 308, 443, 451, 457, 628, 937
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FatI	CATG	9 cut(s)	22, 61, 114, 304, 439, 447, 453, 624, 933
FauI	CCCGC	1 cut(s)	76
FbaI	TGATCA	2 cut(s)	586, 897
Fnu4HI	GCNGC	4 cut(s)	51, 72, 353, 608
FokI	GGATG	3 cut(s)	41, 631, 735
FriOI	GRGCYC	2 cut(s)	69, 843
Fsp4HI	GCNGC	4 cut(s)	51, 72, 353, 608
FspI	TGCGCA	1 cut(s)	351
GlaI	GCGC	2 cut(s)	103, 351
GluI	GCNGC	4 cut(s)	51, 72, 353, 608
GsuI	CTGGAG	1 cut(s)	857
HaeII	RGCGCY	1 cut(s)	105
HapII	CCGG	2 cut(s)	633, 645
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	2 cut(s)	104, 352
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	9 cut(s)	26, 65, 118, 308, 443, 451, 457, 628, 937
Hin6I	GCGC	2 cut(s)	102, 350
HinP1I	GCGC	2 cut(s)	102, 350
HincII	GTYRAC	1 cut(s)	783
HindII	GTYRAC	1 cut(s)	783
HinfI	GANTC	4 cut(s)	131, 259, 500, 887
HpaII	CCGG	2 cut(s)	633, 645
HphI	GGTGA	4 cut(s)	209, 209, 640, 882
Hpy166II	GTNNAC	2 cut(s)	769, 783
Hpy188I	TCNGA	4 cut(s)	338, 405, 688, 902
Hpy188III	TCNNGA	5 cut(s)	62, 252, 533, 590, 836
Hpy8I	GTNNAC	2 cut(s)	769, 783
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	1 cut(s)	513
HpyCH4III	ACNGT	2 cut(s)	773, 920
HpyCH4V	TGCA	6 cut(s)	22, 53, 74, 506, 610, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 192
HpyF3I	CTNAG	3 cut(s)	240, 459, 471
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	9 cut(s)	26, 65, 118, 308, 443, 451, 457, 628, 937
HspAI	GCGC	2 cut(s)	102, 350
Ksp22I	TGATCA	2 cut(s)	586, 897
Kzo9I	GATC	2 cut(s)	586, 897
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	3 cut(s)	489, 658, 838
Lsp1109I	GCAGC	4 cut(s)	37, 58, 364, 594
LweI	GCATC	1 cut(s)	716
MaeIII	GTNAC	5 cut(s)	169, 215, 276, 343, 628
MalI	GATC	2 cut(s)	588, 899
MboI	GATC	2 cut(s)	586, 897
MboII	GAAGA	6 cut(s)	302, 382, 442, 591, 815, 938
MfeI	CAATTG	1 cut(s)	650
MhlI	GDGCHC	3 cut(s)	69, 546, 843
MluCI	AATT	5 cut(s)	537, 593, 637, 650, 953
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	4 cut(s)	135, 145, 287, 361
MnlI	CCTC	9 cut(s)	19, 235, 238, 411, 468, 503, 609, 649, 694
Mph1103I	ATGCAT	1 cut(s)	24
MroXI	GAANNNNTTC	1 cut(s)	389
MseI	TTAA	3 cut(s)	311, 719, 867
MslI	CAYNNNNRTG	2 cut(s)	27, 452
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	2 cut(s)	633, 645
MspR9I	CCNGG	1 cut(s)	287
MunI	CAATTG	1 cut(s)	650
Mva1269I	GAATGC	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	2 cut(s)	80, 192
NdeII	GATC	2 cut(s)	586, 897
NlaIII	CATG	9 cut(s)	26, 65, 118, 308, 443, 451, 457, 628, 937
NlaIV	GGNNCC	1 cut(s)	284
NmuCI	GTSAC	4 cut(s)	169, 215, 343, 628
NsbI	TGCGCA	1 cut(s)	351
NsiI	ATGCAT	1 cut(s)	24
PagI	TCATGA	1 cut(s)	61
PciSI	GCTCTTC	1 cut(s)	285
PctI	GAATGC	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	3 cut(s)	259, 500, 887
PflFI	GACNNNGTC	1 cut(s)	175
PfoI	TCCNGGA	1 cut(s)	285
PkrI	GCNGC	4 cut(s)	52, 73, 354, 609
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PpuMI	RGGWCCY	1 cut(s)	283
PshBI	ATTAAT	1 cut(s)	719
Psp124BI	GAGCTC	1 cut(s)	843
Psp5II	RGGWCCY	1 cut(s)	283
Psp6I	CCWGG	1 cut(s)	285
PspEI	GGTNACC	2 cut(s)	215, 628
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	283
PspPPI	RGGWCCY	1 cut(s)	283
PstI	CTGCAG	2 cut(s)	76, 508
PsyI	GACNNNGTC	1 cut(s)	175
RsaI	GTAC	1 cut(s)	529
RsaNI	GTAC	1 cut(s)	528
RseI	CAYNNNNRTG	2 cut(s)	27, 452
SacI	GAGCTC	1 cut(s)	843
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	3 cut(s)	311, 719, 867
SatI	GCNGC	4 cut(s)	51, 72, 353, 608
Sau3AI	GATC	2 cut(s)	586, 897
Sau96I	GGNCC	1 cut(s)	283
ScaI	AGTACT	1 cut(s)	529
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	3 cut(s)	69, 546, 843
SfaNI	GCATC	1 cut(s)	716
SfcI	CTRYAG	2 cut(s)	72, 504
SinI	GGWCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	2 cut(s)	27, 452
SmlI	CTYRAG	1 cut(s)	851
SmoI	CTYRAG	1 cut(s)	851
Sse9I	AATT	5 cut(s)	537, 593, 637, 650, 953
SsiI	CCGC	5 cut(s)	34, 69, 195, 231, 573
SspI	AATATT	2 cut(s)	796, 947
SstI	GAGCTC	1 cut(s)	843
StyD4I	CCNGG	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	773, 920
TasI	AATT	5 cut(s)	537, 593, 637, 650, 953
TatI	WGTACW	1 cut(s)	527
TfiI	GAWTC	3 cut(s)	259, 500, 887
Tru1I	TTAA	3 cut(s)	311, 719, 867
Tru9I	TTAA	3 cut(s)	311, 719, 867
TscAI	CASTG	1 cut(s)	609
TseFI	GTSAC	4 cut(s)	169, 215, 343, 628
TseI	GCWGC	4 cut(s)	50, 71, 352, 607
Tsp45I	GTSAC	4 cut(s)	169, 215, 343, 628
TspDTI	ATGAA	4 cut(s)	17, 50, 456, 922
TspRI	CASTG	1 cut(s)	609
Tth111I	GACNNNGTC	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	283
VspI	ATTAAT	1 cut(s)	719
XmnI	GAANNNNTTC	1 cut(s)	389
ZrmI	AGTACT	1 cut(s)	529
Zsp2I	ATGCAT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.