Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005562

Physical Location & Seq

Genomic Coordinates Forward (+)

2221843 .. 2222962

Gene Structure 1120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG033100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAACAATAATCAGGATATGCATGAGGATGACTACTACTCGATCAAAGCTGCAAATCTTCATGAGCCCGCTGCAGAAGTAGCATTCACTCCCAAGCTTACCGCTACTTCCAACATGACCCAAAGTTATGTGTTATCATTCAACCACCAGCAGCATGATCAGGATGTTGACATGGGATATAGTAAAACAATTAATATATTTCATACAGCGGTTGGAGTGAAGTCGTTGCAAGGCCGGAGTGGCGCTGCAGGACTGAGAAGGTCAGGTACTCTTGAAATTGAGCACCAGAATAAATGGACACTATCAAACTGCGGTGTTCTTGCTGATCAGTCCACAGGAATTATCTCCAGGGTTGCGGAAGAGGATGAGCATGGTGACGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

13.97

Weight (kDa)

5.17

Isoelectric Point (pI)

49.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005562)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450741 RchiOBHm_Chr3g0450831 RchiOBHm_Chr3g0450921 RchiOBHm_Chr3g0450931
rosa_laevigata	RLG00000025699 RLG00000025703 RLG00000025706
rosa_multiflora	Rmu_sc0000078.1_g000007
rosa_roxburghii	Rroxscaffold_6G00428400 Rroxscaffold_6G00428530 Rroxscaffold_7G00179190
rosa_rugosa	Rorug02G0630300 Rorug02G0630700
rosa_samantha	Rh3AG031000 Rh3AG031300 Rh3AG032100 Rh3AG033000 Rh3BG031400 Rh3BG031800 Rh3BG032500 Rh3BG033300 Rh3CG030200 Rh3CG030600 Rh3CG031200 Rh3CG032100 Rh3DG031200 Rh3DG031500 Rh3DG032100 Rh3DG033100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	69, 102, 209, 312, 356
AfaI	GTAC	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	142, 275
AjnI	CCWGG	1 cut(s)	347
AluBI	AGCT	2 cut(s)	50, 97
AluI	AGCT	2 cut(s)	50, 97
Alw21I	GWGCWC	1 cut(s)	285
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	4 cut(s)	50, 71, 151, 245
AseI	ATTAAT	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	69
BarI	GAAGNNNNNNTAC	2 cut(s)	250, 282
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	4 cut(s)	37, 58, 163, 232
BciT130I	CCWGG	1 cut(s)	349
BclI	TGATCA	2 cut(s)	157, 325
BfmI	CTRYAG	2 cut(s)	72, 246
BfoI	RGCGCY	1 cut(s)	246
BglI	GCCNNNNNGGC	1 cut(s)	240
BisI	GCNGC	4 cut(s)	51, 72, 152, 246
BlsI	GCNGC	4 cut(s)	52, 73, 153, 247
Bme1390I	CCNGG	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	349
BpmI	CTGGAG	1 cut(s)	331
BsaJI	CCNNGG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	3 cut(s)	34, 169, 370
BseMII	CTCAG	1 cut(s)	245
BseXI	GCAGC	4 cut(s)	37, 58, 163, 232
BshFI	GGCC	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	235
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	234
Bsp1286I	GDGCHC	2 cut(s)	69, 285
Bsp143I	GATC	3 cut(s)	42, 157, 325
BspACI	CCGC	5 cut(s)	69, 102, 209, 312, 356
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	246
BspHI	TCATGA	1 cut(s)	61
BspMAI	CTGCAG	2 cut(s)	76, 250
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	3 cut(s)	42, 157, 325
Bst2UI	CCWGG	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	354
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	254
BstF5I	GGATG	3 cut(s)	34, 169, 370
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	3 cut(s)	45, 160, 328
BstMBI	GATC	3 cut(s)	42, 157, 325
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 240
BstNI	CCWGG	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	347
BstSFI	CTRYAG	2 cut(s)	72, 246
BstV1I	GCAGC	4 cut(s)	37, 58, 163, 232
BsuRI	GGCC	1 cut(s)	234
BtsCI	GGATG	3 cut(s)	34, 169, 370
Cac8I	GCNNGC	1 cut(s)	69
CciI	TCATGA	1 cut(s)	61
CfoI	GCGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	267
CviAII	CATG	6 cut(s)	23, 62, 115, 155, 172, 371
CviJI	RGCY	4 cut(s)	50, 67, 97, 234
CviKI_1	RGCY	4 cut(s)	50, 67, 97, 234
CviQI	GTAC	1 cut(s)	267
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	3 cut(s)	44, 159, 327
DpnII	GATC	3 cut(s)	42, 157, 325
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	347
EcoT22I	ATGCAT	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	69
FaeI	CATG	6 cut(s)	26, 65, 118, 158, 175, 374
FatI	CATG	6 cut(s)	22, 61, 114, 154, 171, 370
FauI	CCCGC	1 cut(s)	76
FbaI	TGATCA	2 cut(s)	157, 325
Fnu4HI	GCNGC	4 cut(s)	51, 72, 152, 246
FokI	GGATG	3 cut(s)	41, 176, 377
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	4 cut(s)	51, 72, 152, 246
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	4 cut(s)	51, 72, 152, 246
GsuI	CTGGAG	1 cut(s)	331
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	1 cut(s)	235
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	6 cut(s)	26, 65, 118, 158, 175, 374
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	95
HpaII	CCGG	1 cut(s)	235
Hpy166II	GTNNAC	2 cut(s)	169, 333
Hpy188III	TCNNGA	4 cut(s)	14, 62, 161, 272
Hpy8I	GTNNAC	2 cut(s)	169, 333
HpyAV	CCTTC	1 cut(s)	252
HpyCH4V	TGCA	5 cut(s)	22, 53, 74, 229, 248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 240
HpyF3I	CTNAG	1 cut(s)	254
Hsp92II	CATG	6 cut(s)	26, 65, 118, 158, 175, 374
HspAI	GCGC	1 cut(s)	243
Ksp22I	TGATCA	2 cut(s)	157, 325
Kzo9I	GATC	3 cut(s)	42, 157, 325
LpnPI	CCDG	9 cut(s)	146, 161, 234, 248, 249, 299, 321, 334, 361
Lsp1109I	GCAGC	4 cut(s)	37, 58, 163, 232
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	3 cut(s)	44, 159, 327
MboI	GATC	3 cut(s)	42, 157, 325
MboII	GAAGA	2 cut(s)	50, 371
MhlI	GDGCHC	2 cut(s)	69, 285
MluCI	AATT	3 cut(s)	189, 276, 339
MmeI	TCCRAC	2 cut(s)	135, 193
MnlI	CCTC	2 cut(s)	19, 355
Mph1103I	ATGCAT	1 cut(s)	24
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	27
MspA1I	CMGCKG	2 cut(s)	71, 209
MspI	CCGG	1 cut(s)	235
MspR9I	CCNGG	1 cut(s)	349
Mva1269I	GAATGC	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	2 cut(s)	80, 240
NdeII	GATC	3 cut(s)	42, 157, 325
NlaIII	CATG	6 cut(s)	26, 65, 118, 158, 175, 374
NmuCI	GTSAC	1 cut(s)	374
NsiI	ATGCAT	1 cut(s)	24
PagI	TCATGA	1 cut(s)	61
PctI	GAATGC	1 cut(s)	83
PkrI	GCNGC	4 cut(s)	52, 73, 153, 247
PshBI	ATTAAT	1 cut(s)	192
Psp6I	CCWGG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	347
PstI	CTGCAG	2 cut(s)	76, 250
RsaI	GTAC	1 cut(s)	268
RsaNI	GTAC	1 cut(s)	267
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	192
SatI	GCNGC	4 cut(s)	51, 72, 152, 246
Sau3AI	GATC	3 cut(s)	42, 157, 325
ScrFI	CCNGG	1 cut(s)	349
SduI	GDGCHC	2 cut(s)	69, 285
SetI	ASST	4 cut(s)	52, 99, 263, 268
SfcI	CTRYAG	2 cut(s)	72, 246
SmiMI	CAYNNNNRTG	1 cut(s)	27
Sse9I	AATT	3 cut(s)	189, 276, 339
SsiI	CCGC	5 cut(s)	69, 102, 209, 312, 356
StyD4I	CCNGG	1 cut(s)	347
TaqI	TCGA	1 cut(s)	41
TasI	AATT	3 cut(s)	189, 276, 339
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	4 cut(s)	50, 71, 151, 245
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	3 cut(s)	17, 50, 191
VspI	ATTAAT	1 cut(s)	192
Zsp2I	ATGCAT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.