Rh3CG031200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0005562
Physical Location & Seq
Forward (+)
2168063 .. 2169510
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG031200.1

Sequence Viewer

Length: 618 bp
ATGAACAACAATAGGGATATGCATGAGGATGACTACTACTCGATCAAAGCTGCAAATGTTCATGAGCCCGCTGCAGAAGTAGCATTCACTCCAAAGCTTAGCGCTACTTCCAACATGACCCAAAGTTATGTGTTATCATCCAACCACCACCATCATCAGGCTGTAGGACAGAGAAGGTCAAGTACTCTTGAAATTGAGCACCAGAATAAATGGACACTATCAAACTGCGGTATTCTTGCTGATCAGGAATTATCTTCAGTGCTGCAAAAGAGGATGAGCATGGTGACCGGCAATTACTCCGGTCAATTGGAGGAGCAATCCTATTTGGCTACACCGACCTCGGAAGAACAACGAACAAACGCATCAGCTACATTAATATACACAAAGCTCTTGGACTATCATCATCTCCATTATGATAACGATTACGGTATGGTGTTGACTGCACCCAATATTTACAAAGAAGCAGAAAGTAGATTAGAAACTCAAACTCTGGAGCTCTTTCCACTTGAGAGCGACAATGTTAAGGGTGTTATGGATACCGAATCACCTATGATCAGAACCACAAACACAGACAGTAAGGAAGATTTCATGGCATACCAATATTTTCAATTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.47

Weight (kDa)

5.09

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 69, 228
AcuI CTGAAG 1 cut(s) 240
AfaI GTAC 1 cut(s) 184
AfeI AGCGCT 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 157
AgsI TTSAA 2 cut(s) 191, 608
AluBI AGCT 5 cut(s) 50, 97, 368, 388, 496
AluI AGCT 5 cut(s) 50, 97, 368, 388, 496
Alw21I GWGCWC 2 cut(s) 201, 498
Aor51HI AGCGCT 1 cut(s) 103
ApeKI GCWGC 3 cut(s) 50, 71, 262
AseI ATTAAT 1 cut(s) 374
AspLEI GCGC 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 295, 537
BanII GRGCYC 2 cut(s) 69, 498
BarI GAAGNNNNNNTAC 2 cut(s) 166, 198
Bbv12I GWGCWC 2 cut(s) 201, 498
BbvI GCAGC 3 cut(s) 37, 58, 249
BccI CCATC 1 cut(s) 159
BciVI GTATCC 1 cut(s) 529
BclI TGATCA 2 cut(s) 241, 552
BfmI CTRYAG 2 cut(s) 72, 162
BfoI RGCGCY 1 cut(s) 105
BfuI GTATCC 1 cut(s) 529
BisI GCNGC 3 cut(s) 51, 72, 263
BlpI GCTNAGC 1 cut(s) 98
BlsI GCNGC 3 cut(s) 52, 73, 264
BmcAI AGTACT 1 cut(s) 184
BmsI GCATC 1 cut(s) 371
BpmI CTGGAG 1 cut(s) 512
Bpu1102I GCTNAGC 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 527
BsaJI CCNNGG 1 cut(s) 339
BsaWI WCCGGW 1 cut(s) 299
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse118I RCCGGY 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 3 cut(s) 34, 137, 279
BseLI CCNNNNNNNGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 3 cut(s) 37, 58, 249
BsgI GTGCAG 1 cut(s) 426
BsiHKAI GWGCWC 2 cut(s) 201, 498
BsiSI CCGG 2 cut(s) 288, 300
BslI CCNNNNNNNGG 1 cut(s) 157
BsmI GAATGC 1 cut(s) 83
Bsp1286I GDGCHC 3 cut(s) 69, 201, 498
Bsp143I GATC 3 cut(s) 42, 241, 552
Bsp1720I GCTNAGC 1 cut(s) 98
BspACI CCGC 2 cut(s) 69, 228
BspHI TCATGA 1 cut(s) 61
BspMAI CTGCAG 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 287
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 3 cut(s) 42, 241, 552
Bst4CI ACNGT 2 cut(s) 428, 575
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 98
BstEII GGTNACC 1 cut(s) 283
BstF5I GGATG 3 cut(s) 34, 137, 279
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 3 cut(s) 45, 244, 555
BstMBI GATC 3 cut(s) 42, 241, 552
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstPI GGTNACC 1 cut(s) 283
BstSFI CTRYAG 2 cut(s) 72, 162
BstV1I GCAGC 3 cut(s) 37, 58, 249
BsuI GTATCC 1 cut(s) 529
BtsCI GGATG 3 cut(s) 34, 137, 279
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 69
CciI TCATGA 1 cut(s) 61
CfoI GCGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 287
Csp6I GTAC 1 cut(s) 183
CviAII CATG 5 cut(s) 23, 62, 115, 280, 589
CviJI RGCY 8 cut(s) 50, 67, 97, 161, 329, 368, 388, 496
CviKI_1 RGCY 8 cut(s) 50, 67, 97, 161, 329, 368, 388, 496
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 1 cut(s) 98
DpnI GATC 3 cut(s) 44, 243, 554
DpnII GATC 3 cut(s) 42, 241, 552
Ecl136II GAGCTC 1 cut(s) 496
Eco24I GRGCYC 2 cut(s) 69, 498
Eco47III AGCGCT 1 cut(s) 103
Eco53kI GAGCTC 1 cut(s) 496
Eco57I CTGAAG 1 cut(s) 240
Eco91I GGTNACC 1 cut(s) 283
EcoICRI GAGCTC 1 cut(s) 496
EcoO65I GGTNACC 1 cut(s) 283
EcoT22I ATGCAT 1 cut(s) 24
EcoT38I GRGCYC 2 cut(s) 69, 498
FaeI CATG 5 cut(s) 26, 65, 118, 283, 592
FatI CATG 5 cut(s) 22, 61, 114, 279, 588
FauI CCCGC 1 cut(s) 76
FbaI TGATCA 2 cut(s) 241, 552
Fnu4HI GCNGC 3 cut(s) 51, 72, 263
FokI GGATG 3 cut(s) 41, 124, 286
FriOI GRGCYC 2 cut(s) 69, 498
Fsp4HI GCNGC 3 cut(s) 51, 72, 263
GlaI GCGC 1 cut(s) 103
GluI GCNGC 3 cut(s) 51, 72, 263
GsuI CTGGAG 1 cut(s) 512
HaeII RGCGCY 1 cut(s) 105
HapII CCGG 2 cut(s) 288, 300
HhaI GCGC 1 cut(s) 104
Hin1II CATG 5 cut(s) 26, 65, 118, 283, 592
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 1 cut(s) 438
HindII GTYRAC 1 cut(s) 438
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 1 cut(s) 542
HpaII CCGG 2 cut(s) 288, 300
HphI GGTGA 2 cut(s) 295, 537
Hpy166II GTNNAC 1 cut(s) 438
Hpy188I TCNGA 2 cut(s) 343, 557
Hpy188III TCNNGA 4 cut(s) 62, 188, 245, 491
Hpy8I GTNNAC 1 cut(s) 438
HpyAV CCTTC 1 cut(s) 168
HpyCH4III ACNGT 2 cut(s) 428, 575
HpyCH4V TGCA 5 cut(s) 22, 53, 74, 265, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 98
Hsp92II CATG 5 cut(s) 26, 65, 118, 283, 592
HspAI GCGC 1 cut(s) 102
Ksp22I TGATCA 2 cut(s) 241, 552
Kzo9I GATC 3 cut(s) 42, 241, 552
LmnI GCTCC 2 cut(s) 313, 493
LpnPI CCDG 6 cut(s) 143, 215, 230, 301, 313, 476
Lsp1109I GCAGC 3 cut(s) 37, 58, 249
LweI GCATC 1 cut(s) 371
MaeIII GTNAC 1 cut(s) 283
MalI GATC 3 cut(s) 44, 243, 554
MboI GATC 3 cut(s) 42, 241, 552
MboII GAAGA 3 cut(s) 246, 356, 593
MfeI CAATTG 1 cut(s) 305
MhlI GDGCHC 3 cut(s) 69, 201, 498
MluCI AATT 5 cut(s) 192, 248, 292, 305, 608
MmeI TCCRAC 2 cut(s) 135, 165
MnlI CCTC 4 cut(s) 19, 264, 304, 349
Mph1103I ATGCAT 1 cut(s) 24
MseI TTAA 2 cut(s) 374, 522
MslI CAYNNNNRTG 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 2 cut(s) 288, 300
MunI CAATTG 1 cut(s) 305
Mva1269I GAATGC 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 3 cut(s) 42, 241, 552
NlaIII CATG 5 cut(s) 26, 65, 118, 283, 592
NmuCI GTSAC 1 cut(s) 283
NsiI ATGCAT 1 cut(s) 24
PagI TCATGA 1 cut(s) 61
PctI GAATGC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 542
PkrI GCNGC 3 cut(s) 52, 73, 264
PshBI ATTAAT 1 cut(s) 374
Psp124BI GAGCTC 1 cut(s) 498
PspEI GGTNACC 1 cut(s) 283
PstI CTGCAG 1 cut(s) 76
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 27
SacI GAGCTC 1 cut(s) 498
SaqAI TTAA 2 cut(s) 374, 522
SatI GCNGC 3 cut(s) 51, 72, 263
Sau3AI GATC 3 cut(s) 42, 241, 552
ScaI AGTACT 1 cut(s) 184
SduI GDGCHC 3 cut(s) 69, 201, 498
SetI ASST 8 cut(s) 52, 99, 179, 341, 370, 390, 498, 550
SfaNI GCATC 1 cut(s) 371
SfcI CTRYAG 2 cut(s) 72, 162
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 5 cut(s) 192, 248, 292, 305, 608
SsiI CCGC 2 cut(s) 69, 228
SspI AATATT 2 cut(s) 451, 602
SstI GAGCTC 1 cut(s) 498
TaaI ACNGT 2 cut(s) 428, 575
TaqI TCGA 1 cut(s) 41
TasI AATT 5 cut(s) 192, 248, 292, 305, 608
TatI WGTACW 1 cut(s) 182
TfiI GAWTC 1 cut(s) 542
Tru1I TTAA 2 cut(s) 374, 522
Tru9I TTAA 2 cut(s) 374, 522
TscAI CASTG 1 cut(s) 264
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 3 cut(s) 50, 71, 262
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 3 cut(s) 17, 50, 577
TspRI CASTG 1 cut(s) 264
VspI ATTAAT 1 cut(s) 374
ZrmI AGTACT 1 cut(s) 184
Zsp2I ATGCAT 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.