Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005562

Physical Location & Seq

Genomic Coordinates Reverse (-)

47786221 .. 47787623

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025706

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAACAATAATAGGGATATGCATCGGGATGACCACTACTCGATCAAAGCTGCAAATCTTCATGAGCCCGCTGCAGAAGTAGCATTCACTCCAAAGCTTAACGCTACTTCGAACATGACCCAGAGTCATGTGTTATCATTCAACCACCACCATCATCAGGTGGTTGGAGCGACATCGTCTGAGCAAGGCAGAAGTGCCAGTGATGGTCAACAACCCGCTTCTGCAGCTTTGCAGCGAAGTTCCCGATGGAATCCAACCCCGGAGCACTTACGGTTCCTGAAAGAGCTGTACGGACATGGTTTAAAAACACCGACGGCACCACAAATTCGAGAAGTGACTGCGCGGCTTCGACACTTTGGAAAGATTGAAGGCAAGAATGTCTTCTACTGGTTTCAGAACCACCGAGCGAGGGAGAGACAGAAGAGCCGAAGAGGACTCATGTTCATGCCTCAGTATCGGTCGAAGGAACAACGACTTTGGAGTAACAAAGAATCTGCAGGAGGACTGAGAAGGTCAGGTACTCTTGAAATTGAGCACCAGAATAAATGGACACGGTCAAACTGCGGTGTTCTTGCTGATCAGGAATTATCTCCAGGGCTGCGAAAGAGGATGAGCATGGTAACGGGCAATTACTCAGGTCAATTGGAGGAGCAATCCTATTCGGCTACACTGACCTCGGAAGCACAACGAACAAATGCATCAGCTACATTAATATACCCAAATCTCATGGACTATCATCGTCCCCATTATGATTATGATTACGGTATGATGTTGAGTGCACCCAATATTTACAAAGGAGCAGAAAGTAGATTAGAAACTCTAACTCTGGAGCTCTTTCCACTTGAGAGCGACAATGTTAAGGGTGTTAATGATACCGAATCACCAATGATTAGAGCCACAAACACAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

304

Amino Acids

34.6

Weight (kDa)

9.32

Isoelectric Point (pI)

61.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	79 - 140	4.3e-12	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005562)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450741 RchiOBHm_Chr3g0450831 RchiOBHm_Chr3g0450921 RchiOBHm_Chr3g0450931
rosa_laevigata	RLG00000025699 RLG00000025703 RLG00000025706
rosa_multiflora	Rmu_sc0000078.1_g000007
rosa_roxburghii	Rroxscaffold_6G00428400 Rroxscaffold_6G00428530 Rroxscaffold_7G00179190
rosa_rugosa	Rorug02G0630300 Rorug02G0630700
rosa_samantha	Rh3AG031000 Rh3AG031300 Rh3AG032100 Rh3AG033000 Rh3BG031400 Rh3BG031800 Rh3BG032500 Rh3BG033300 Rh3CG030200 Rh3CG030600 Rh3CG031200 Rh3CG032100 Rh3DG031200 Rh3DG031500 Rh3DG032100 Rh3DG033100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	316
AccII	CGCG	1 cut(s)	343
AciI	CCGC	4 cut(s)	69, 216, 343, 564
AcsI	RAATTY	1 cut(s)	324
AfaI	GTAC	2 cut(s)	290, 520
AfiI	CCNNNNNNNGG	2 cut(s)	157, 409
AgsI	TTSAA	3 cut(s)	142, 368, 527
AhdI	GACNNNNNGTC	1 cut(s)	123
AjnI	CCWGG	1 cut(s)	592
AluBI	AGCT	6 cut(s)	50, 97, 227, 286, 704, 832
AluI	AGCT	6 cut(s)	50, 97, 227, 286, 704, 832
Alw21I	GWGCWC	4 cut(s)	267, 537, 781, 834
Alw26I	GTCTC	1 cut(s)	409
Alw44I	GTGCAC	1 cut(s)	777
ApaLI	GTGCAC	1 cut(s)	777
ApeKI	GCWGC	5 cut(s)	50, 71, 224, 232, 598
ApoI	RAATTY	1 cut(s)	324
AseI	ATTAAT	1 cut(s)	710
Asp700I	GAANNNNTTC	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	343
AsuC2I	CCSGG	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	873
AsuII	TTCGAA	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	781
BanI	GGYRCC	1 cut(s)	316
BanII	GRGCYC	2 cut(s)	69, 834
BarI	GAAGNNNNNNTAC	2 cut(s)	502, 534
BbsI	GAAGAC	1 cut(s)	373
Bbv12I	GWGCWC	4 cut(s)	267, 537, 781, 834
BbvI	GCAGC	5 cut(s)	37, 58, 236, 244, 585
BccI	CCATC	3 cut(s)	159, 197, 240
BceAI	ACGGC	1 cut(s)	330
BciT130I	CCWGG	1 cut(s)	594
BclI	TGATCA	1 cut(s)	577
BcnI	CCSGG	1 cut(s)	260
BcoDI	GTCTC	1 cut(s)	409
BfmI	CTRYAG	3 cut(s)	72, 222, 495
BisI	GCNGC	6 cut(s)	51, 72, 225, 233, 344, 599
BlsI	GCNGC	6 cut(s)	52, 73, 226, 234, 345, 600
Bme1390I	CCNGG	2 cut(s)	260, 594
BmeRI	GACNNNNNGTC	1 cut(s)	123
BmiI	GGNNCC	2 cut(s)	275, 318
BmrFI	CCNGG	2 cut(s)	260, 594
BmsI	GCATC	2 cut(s)	31, 707
BpiI	GAAGAC	1 cut(s)	373
BpmI	CTGGAG	2 cut(s)	576, 848
Bpu14I	TTCGAA	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	863
BpuMI	CCSGG	1 cut(s)	260
BsaBI	GATNNNNATC	1 cut(s)	21
BsaJI	CCNNGG	3 cut(s)	258, 593, 675
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 409
Bse1I	ACTGG	2 cut(s)	198, 392
Bse8I	GATNNNNATC	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	594
BseDI	CCNNGG	3 cut(s)	258, 593, 675
BseGI	GGATG	2 cut(s)	34, 615
BseJI	GATNNNNATC	1 cut(s)	21
BseLI	CCNNNNNNNGG	2 cut(s)	157, 409
BseMII	CTCAG	4 cut(s)	171, 464, 497, 648
BseNI	ACTGG	2 cut(s)	198, 392
BseRI	GAGGAG	1 cut(s)	662
BseSI	GKGCMC	1 cut(s)	781
BseXI	GCAGC	5 cut(s)	37, 58, 236, 244, 585
Bsh1236I	CGCG	1 cut(s)	343
Bsh1285I	CGRYCG	1 cut(s)	461
BshNI	GGYRCC	1 cut(s)	316
BsiEI	CGRYCG	1 cut(s)	461
BsiHKAI	GWGCWC	4 cut(s)	267, 537, 781, 834
BsiSI	CCGG	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	726
BslI	CCNNNNNNNGG	2 cut(s)	157, 409
BsmAI	GTCTC	1 cut(s)	409
BsmFI	GGGAC	1 cut(s)	726
BsmI	GAATGC	1 cut(s)	83
Bsp119I	TTCGAA	1 cut(s)	110
Bsp1286I	GDGCHC	5 cut(s)	69, 267, 537, 781, 834
Bsp143I	GATC	2 cut(s)	42, 577
BspACI	CCGC	4 cut(s)	69, 216, 343, 564
BspCNI	CTCAG	4 cut(s)	172, 463, 498, 647
BspFNI	CGCG	1 cut(s)	343
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	275, 318
BspMAI	CTGCAG	3 cut(s)	76, 226, 499
BspQI	GCTCTTC	1 cut(s)	416
BspT104I	TTCGAA	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	198, 392
BssECI	CCNNGG	3 cut(s)	258, 593, 675
BssMI	GATC	2 cut(s)	42, 577
Bst2UI	CCWGG	1 cut(s)	594
Bst4CI	ACNGT	3 cut(s)	273, 555, 764
Bst6I	CTCTTC	2 cut(s)	416, 424
BstBI	TTCGAA	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	4 cut(s)	180, 450, 506, 634
BstF5I	GGATG	2 cut(s)	34, 615
BstFNI	CGCG	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	2 cut(s)	45, 580
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	2 cut(s)	42, 577
BstMCI	CGRYCG	1 cut(s)	461
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 224
BstNI	CCWGG	1 cut(s)	594
BstSCI	CCNGG	2 cut(s)	258, 592
BstSFI	CTRYAG	3 cut(s)	72, 222, 495
BstSLI	GKGCMC	1 cut(s)	781
BstUI	CGCG	1 cut(s)	343
BstV1I	GCAGC	5 cut(s)	37, 58, 236, 244, 585
BstV2I	GAAGAC	1 cut(s)	373
BtsCI	GGATG	2 cut(s)	34, 615
BtsIMutI	CAGTG	2 cut(s)	205, 668
Cac8I	GCNNGC	1 cut(s)	69
CciI	TCATGA	1 cut(s)	61
CfoI	GCGC	1 cut(s)	343
Csp6I	GTAC	2 cut(s)	289, 519
CviAII	CATG	8 cut(s)	62, 115, 128, 296, 439, 445, 616, 727
CviQI	GTAC	2 cut(s)	289, 519
DdeI	CTNAG	4 cut(s)	180, 450, 506, 634
DpnI	GATC	2 cut(s)	44, 579
DpnII	GATC	2 cut(s)	42, 577
DraI	TTTAAA	1 cut(s)	303
DriI	GACNNNNNGTC	1 cut(s)	123
Eam1104I	CTCTTC	2 cut(s)	416, 424
Eam1105I	GACNNNNNGTC	1 cut(s)	123
EarI	CTCTTC	2 cut(s)	416, 424
Ecl136II	GAGCTC	1 cut(s)	832
Eco24I	GRGCYC	2 cut(s)	69, 834
Eco53kI	GAGCTC	1 cut(s)	832
EcoICRI	GAGCTC	1 cut(s)	832
EcoRII	CCWGG	1 cut(s)	592
EcoT22I	ATGCAT	2 cut(s)	24, 700
EcoT38I	GRGCYC	2 cut(s)	69, 834
FaeI	CATG	8 cut(s)	65, 118, 131, 299, 442, 448, 619, 730
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	1 cut(s)	726
FatI	CATG	8 cut(s)	61, 114, 127, 295, 438, 444, 615, 726
FauI	CCCGC	2 cut(s)	76, 223
FbaI	TGATCA	1 cut(s)	577
Fnu4HI	GCNGC	6 cut(s)	51, 72, 225, 233, 344, 599
FokI	GGATG	2 cut(s)	41, 622
FriOI	GRGCYC	2 cut(s)	69, 834
Fsp4HI	GCNGC	6 cut(s)	51, 72, 225, 233, 344, 599
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	6 cut(s)	51, 72, 225, 233, 344, 599
GsuI	CTGGAG	2 cut(s)	576, 848
HapII	CCGG	1 cut(s)	260
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	8 cut(s)	65, 118, 131, 299, 442, 448, 619, 730
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HincII	GTYRAC	1 cut(s)	209
HindII	GTYRAC	1 cut(s)	209
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	5 cut(s)	124, 250, 435, 491, 878
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	1 cut(s)	873
Hpy166II	GTNNAC	2 cut(s)	209, 779
Hpy188I	TCNGA	3 cut(s)	181, 396, 679
Hpy188III	TCNNGA	8 cut(s)	26, 62, 243, 277, 329, 524, 581, 827
Hpy8I	GTNNAC	2 cut(s)	209, 779
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	3 cut(s)	362, 457, 504
HpyCH4III	ACNGT	3 cut(s)	273, 555, 764
HpyCH4V	TGCA	8 cut(s)	22, 53, 74, 224, 232, 497, 698, 779
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 224
HpyF3I	CTNAG	4 cut(s)	180, 450, 506, 634
Hsp92II	CATG	8 cut(s)	65, 118, 131, 299, 442, 448, 619, 730
HspAI	GCGC	1 cut(s)	341
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	2 cut(s)	42, 577
LguI	GCTCTTC	1 cut(s)	416
LmnI	GCTCC	5 cut(s)	167, 262, 649, 797, 829
Lsp1109I	GCAGC	5 cut(s)	37, 58, 236, 244, 585
LweI	GCATC	2 cut(s)	31, 707
MaeIII	GTNAC	3 cut(s)	334, 482, 619
MalI	GATC	2 cut(s)	44, 579
MboI	GATC	2 cut(s)	42, 577
MboII	GAAGA	4 cut(s)	50, 373, 433, 441
MfeI	CAATTG	1 cut(s)	641
MhlI	GDGCHC	5 cut(s)	69, 267, 537, 781, 834
MluCI	AATT	5 cut(s)	324, 528, 584, 628, 641
MlyI	GAGTC	2 cut(s)	133, 429
MmeI	TCCRAC	2 cut(s)	145, 278
MnlI	CCTC	7 cut(s)	402, 425, 459, 494, 600, 640, 685
Mph1103I	ATGCAT	2 cut(s)	24, 700
MroXI	GAANNNNTTC	1 cut(s)	380
MseI	TTAA	5 cut(s)	99, 302, 710, 858, 867
MslI	CAYNNNNRTG	2 cut(s)	27, 443
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	2 cut(s)	260, 594
MunI	CAATTG	1 cut(s)	641
Mva1269I	GAATGC	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	594
MvnI	CGCG	1 cut(s)	343
MwoI	GCNNNNNNNGC	2 cut(s)	80, 224
NciI	CCSGG	1 cut(s)	260
NdeII	GATC	2 cut(s)	42, 577
NlaIII	CATG	8 cut(s)	65, 118, 131, 299, 442, 448, 619, 730
NlaIV	GGNNCC	2 cut(s)	275, 318
NmuCI	GTSAC	1 cut(s)	334
NsiI	ATGCAT	2 cut(s)	24, 700
NspV	TTCGAA	1 cut(s)	110
PagI	TCATGA	1 cut(s)	61
PciSI	GCTCTTC	1 cut(s)	416
PctI	GAATGC	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	380
PfeI	GAWTC	3 cut(s)	250, 491, 878
PflFI	GACNNNGTC	2 cut(s)	175, 553
PkrI	GCNGC	6 cut(s)	52, 73, 226, 234, 345, 600
PleI	GAGTC	2 cut(s)	132, 429
PpsI	GAGTC	2 cut(s)	132, 429
PshBI	ATTAAT	1 cut(s)	710
Psp124BI	GAGCTC	1 cut(s)	834
Psp6I	CCWGG	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	592
PspN4I	GGNNCC	2 cut(s)	275, 318
PstI	CTGCAG	3 cut(s)	76, 226, 499
PsyI	GACNNNGTC	2 cut(s)	175, 553
RsaI	GTAC	2 cut(s)	290, 520
RsaNI	GTAC	2 cut(s)	289, 519
RseI	CAYNNNNRTG	2 cut(s)	27, 443
SacI	GAGCTC	1 cut(s)	834
SapI	GCTCTTC	1 cut(s)	416
SaqAI	TTAA	5 cut(s)	99, 302, 710, 858, 867
SatI	GCNGC	6 cut(s)	51, 72, 225, 233, 344, 599
Sau3AI	GATC	2 cut(s)	42, 577
SchI	GAGTC	2 cut(s)	133, 429
ScrFI	CCNGG	2 cut(s)	260, 594
SduI	GDGCHC	5 cut(s)	69, 267, 537, 781, 834
SfaNI	GCATC	2 cut(s)	31, 707
SfcI	CTRYAG	3 cut(s)	72, 222, 495
SfuI	TTCGAA	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	27, 443
SmlI	CTYRAG	1 cut(s)	842
SmoI	CTYRAG	1 cut(s)	842
Sse9I	AATT	5 cut(s)	324, 528, 584, 628, 641
SsiI	CCGC	4 cut(s)	69, 216, 343, 564
SspI	AATATT	1 cut(s)	787
SstI	GAGCTC	1 cut(s)	834
StyD4I	CCNGG	2 cut(s)	258, 592
TaaI	ACNGT	3 cut(s)	273, 555, 764
TaqI	TCGA	5 cut(s)	41, 110, 328, 349, 461
TaqII	GACCGA	1 cut(s)	447
TasI	AATT	5 cut(s)	324, 528, 584, 628, 641
TauI	GCSGC	1 cut(s)	346
TfiI	GAWTC	3 cut(s)	250, 491, 878
Tru1I	TTAA	5 cut(s)	99, 302, 710, 858, 867
Tru9I	TTAA	5 cut(s)	99, 302, 710, 858, 867
TscAI	CASTG	2 cut(s)	205, 675
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	5 cut(s)	50, 71, 224, 232, 598
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	3 cut(s)	17, 50, 433
TspGWI	ACGGA	1 cut(s)	306
TspRI	CASTG	2 cut(s)	205, 675
Tth111I	GACNNNGTC	2 cut(s)	175, 553
VneI	GTGCAC	1 cut(s)	777
VspI	ATTAAT	1 cut(s)	710
XapI	RAATTY	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	380
Zsp2I	ATGCAT	2 cut(s)	24, 700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.