Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005562

Physical Location & Seq

Genomic Coordinates Forward (+)

48803659 .. 48805099

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00428400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAACAATAATAGGGATATGCATGAGGATGACCACTACTCGATCAAAGCTACAAATCTTCATGAACCCGCTGCAAAAGTAGCATTCACTCCAAAGCTTAGCGCTACTTCCAACATGACCCAAAGTCATGTGTTTTCATTCAACCACCACCATCATCAGGTGGTTGGAGTGACATCGTTTGAGCAAGGCAGAAGTGCTAGTGAGGGTCAACAACCCGCCTCTGCAGCTTCGCAGCGAAGTTCCCGATGGAATCCAACCCCGGAGCAGTTACGGTTCCTGGAAGAGCTGTACGGACATGGTTTAAAGACACCGACGGCACAACAAATTCGACAAGTGACTGCGCGGCTTCAACACTTTGGAAAGATTGAAGGCAAGAATGTGTTCTACTGGTTTCAGAACCACCGAGCGAGGGAGAGACAGAAGAGACGAAGAGAACTCATGTCCATGCCACGGTATCAGTCAAAGGAACAACAACTTTGGAGTAACAAAGAATCTGCAGGAGCTGCAGGACTGAGAAGGTCAAGTACTCTTGAAATTGAGCACCAGAATAAATGGACACTGTCAAACTGCGGTGTTCTTGTTGATCAGGAATTATCTCCAGGGCTACGAAAGAGGATGAGCATGGTAACGGGCAATTACTCCGGTCAATTGGAGGAGCAATCCTATTCGGCTACACTGACCTCGGAAGCACAACGAACAAACGCATCAGCTACTTTAATATACCCAAAGCTCTTCGACTATCATCATCATCCCCATTATGATTATGATTACGGTATGGTGTTGAGTGCACCCAATATTTACAAAGGAGCGGAATGTAGATTAGAAACTCAAACTCTGGAGCTCTTTCCACTTGAGAGCGGCAATGTTGAGGGTGTTAATGATACCGAATCACCAATGATTAGAACCACAAACACAGACAGTAATGAAGATTTCATAGCAGACCAATATTTTCAATTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001558 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0009908 GO:0009965 GO:0009987 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048314 GO:0048353 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048444 GO:0048445 GO:0048446 GO:0048465 GO:0048467 GO:0048481 GO:0048482 GO:0048598 GO:0048608 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051301 GO:0051510 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

320

Amino Acids

36.72

Weight (kDa)

6.77

Isoelectric Point (pI)

61.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	79 - 140	4.5e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005562)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0450741 RchiOBHm_Chr3g0450831 RchiOBHm_Chr3g0450921 RchiOBHm_Chr3g0450931
rosa_laevigata	RLG00000025699 RLG00000025703 RLG00000025706
rosa_multiflora	Rmu_sc0000078.1_g000007
rosa_roxburghii	Rroxscaffold_6G00428400 Rroxscaffold_6G00428530 Rroxscaffold_7G00179190
rosa_rugosa	Rorug02G0630300 Rorug02G0630700
rosa_samantha	Rh3AG031000 Rh3AG031300 Rh3AG032100 Rh3AG033000 Rh3BG031400 Rh3BG031800 Rh3BG032500 Rh3BG033300 Rh3CG030200 Rh3CG030600 Rh3CG031200 Rh3CG032100 Rh3DG031200 Rh3DG031500 Rh3DG032100 Rh3DG033100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	809, 858
AccII	CGCG	1 cut(s)	343
AciI	CCGC	6 cut(s)	69, 216, 343, 570, 809, 858
AcsI	RAATTY	1 cut(s)	324
AfaI	GTAC	2 cut(s)	290, 526
AfeI	AGCGCT	1 cut(s)	103
AfiI	CCNNNNNNNGG	3 cut(s)	157, 409, 450
AgsI	TTSAA	5 cut(s)	142, 350, 368, 533, 953
AhdI	GACNNNNNGTC	1 cut(s)	123
AjnI	CCWGG	2 cut(s)	276, 598
AluBI	AGCT	8 cut(s)	50, 97, 227, 286, 503, 710, 730, 841
AluI	AGCT	8 cut(s)	50, 97, 227, 286, 503, 710, 730, 841
Alw21I	GWGCWC	3 cut(s)	543, 790, 843
Alw26I	GTCTC	2 cut(s)	409, 418
Alw44I	GTGCAC	1 cut(s)	786
AlwNI	CAGNNNCTG	1 cut(s)	503
Aor51HI	AGCGCT	1 cut(s)	103
ApaLI	GTGCAC	1 cut(s)	786
ApeKI	GCWGC	4 cut(s)	71, 224, 232, 503
ApoI	RAATTY	1 cut(s)	324
Asp700I	GAANNNNTTC	1 cut(s)	380
AspLEI	GCGC	2 cut(s)	104, 343
AsuC2I	CCSGG	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	882
BaeGI	GKGCMC	1 cut(s)	790
BanII	GRGCYC	1 cut(s)	843
BarI	GAAGNNNNNNTAC	2 cut(s)	508, 540
Bbv12I	GWGCWC	3 cut(s)	543, 790, 843
BbvI	GCAGC	4 cut(s)	58, 236, 244, 490
BccI	CCATC	2 cut(s)	159, 240
BceAI	ACGGC	1 cut(s)	330
BciT130I	CCWGG	2 cut(s)	278, 600
BclI	TGATCA	1 cut(s)	583
BcnI	CCSGG	1 cut(s)	260
BcoDI	GTCTC	2 cut(s)	409, 418
BfaI	CTAG	1 cut(s)	198
BfmI	CTRYAG	3 cut(s)	222, 495, 504
BfoI	RGCGCY	1 cut(s)	105
BisI	GCNGC	6 cut(s)	72, 225, 233, 344, 504, 859
BlpI	GCTNAGC	1 cut(s)	98
BlsI	GCNGC	6 cut(s)	73, 226, 234, 345, 505, 860
BmcAI	AGTACT	1 cut(s)	526
Bme1390I	CCNGG	3 cut(s)	260, 278, 600
BmeRI	GACNNNNNGTC	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	3 cut(s)	260, 278, 600
BmsI	GCATC	1 cut(s)	713
BpmI	CTGGAG	2 cut(s)	582, 857
Bpu1102I	GCTNAGC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	872
BpuMI	CCSGG	1 cut(s)	260
BsaJI	CCNNGG	4 cut(s)	258, 449, 599, 681
BsaWI	WCCGGW	1 cut(s)	641
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 409, 450
Bse1I	ACTGG	1 cut(s)	392
Bse3DI	GCAATG	1 cut(s)	868
BseBI	CCWGG	2 cut(s)	278, 600
BseDI	CCNNGG	4 cut(s)	258, 449, 599, 681
BseGI	GGATG	3 cut(s)	34, 621, 748
BseLI	CCNNNNNNNGG	3 cut(s)	157, 409, 450
BseMI	GCAATG	1 cut(s)	868
BseMII	CTCAG	1 cut(s)	503
BseNI	ACTGG	1 cut(s)	392
BseRI	GAGGAG	1 cut(s)	668
BseSI	GKGCMC	1 cut(s)	790
BseXI	GCAGC	4 cut(s)	58, 236, 244, 490
Bsh1236I	CGCG	1 cut(s)	343
BsiHKAI	GWGCWC	3 cut(s)	543, 790, 843
BsiSI	CCGG	2 cut(s)	260, 642
BslI	CCNNNNNNNGG	3 cut(s)	157, 409, 450
BsmAI	GTCTC	2 cut(s)	409, 418
BsmBI	CGTCTC	1 cut(s)	418
BsmI	GAATGC	1 cut(s)	83
Bsp1286I	GDGCHC	3 cut(s)	543, 790, 843
Bsp143I	GATC	2 cut(s)	42, 583
Bsp1720I	GCTNAGC	1 cut(s)	98
BspACI	CCGC	6 cut(s)	69, 216, 343, 570, 809, 858
BspCNI	CTCAG	1 cut(s)	504
BspFNI	CGCG	1 cut(s)	343
BspHI	TCATGA	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	275
BspMAI	CTGCAG	3 cut(s)	226, 499, 508
BspQI	GCTCTTC	2 cut(s)	276, 737
BsrBI	CCGCTC	2 cut(s)	809, 858
BsrDI	GCAATG	1 cut(s)	868
BsrI	ACTGG	1 cut(s)	392
BssECI	CCNNGG	4 cut(s)	258, 449, 599, 681
BssMI	GATC	2 cut(s)	42, 583
Bst2UI	CCWGG	2 cut(s)	278, 600
Bst4CI	ACNGT	5 cut(s)	273, 453, 561, 773, 920
Bst6I	CTCTTC	4 cut(s)	276, 416, 424, 737
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstDEI	CTNAG	2 cut(s)	98, 512
BstDSI	CCRYGG	1 cut(s)	449
BstF5I	GGATG	3 cut(s)	34, 621, 748
BstFNI	CGCG	1 cut(s)	343
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	2 cut(s)	104, 343
BstKTI	GATC	2 cut(s)	45, 586
BstMAI	GTCTC	2 cut(s)	409, 418
BstMBI	GATC	2 cut(s)	42, 583
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 224, 503
BstNI	CCWGG	2 cut(s)	278, 600
BstSCI	CCNGG	3 cut(s)	258, 276, 598
BstSFI	CTRYAG	3 cut(s)	222, 495, 504
BstSLI	GKGCMC	1 cut(s)	790
BstUI	CGCG	1 cut(s)	343
BstV1I	GCAGC	4 cut(s)	58, 236, 244, 490
BtgI	CCRYGG	1 cut(s)	449
BtsCI	GGATG	3 cut(s)	34, 621, 748
BtsIMutI	CAGTG	2 cut(s)	557, 674
CaiI	CAGNNNCTG	1 cut(s)	503
CciI	TCATGA	1 cut(s)	61
CfoI	GCGC	2 cut(s)	104, 343
Csp6I	GTAC	2 cut(s)	289, 525
CviAII	CATG	8 cut(s)	23, 62, 115, 128, 296, 439, 445, 622
CviQI	GTAC	2 cut(s)	289, 525
DdeI	CTNAG	2 cut(s)	98, 512
DpnI	GATC	2 cut(s)	44, 585
DpnII	GATC	2 cut(s)	42, 583
DraI	TTTAAA	1 cut(s)	303
DriI	GACNNNNNGTC	1 cut(s)	123
Eam1104I	CTCTTC	4 cut(s)	276, 416, 424, 737
Eam1105I	GACNNNNNGTC	1 cut(s)	123
EarI	CTCTTC	4 cut(s)	276, 416, 424, 737
Ecl136II	GAGCTC	1 cut(s)	841
Eco24I	GRGCYC	1 cut(s)	843
Eco47III	AGCGCT	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	841
EcoICRI	GAGCTC	1 cut(s)	841
EcoRII	CCWGG	2 cut(s)	276, 598
EcoT22I	ATGCAT	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	843
Esp3I	CGTCTC	1 cut(s)	418
FaeI	CATG	8 cut(s)	26, 65, 118, 131, 299, 442, 448, 625
FatI	CATG	8 cut(s)	22, 61, 114, 127, 295, 438, 444, 621
FauI	CCCGC	2 cut(s)	76, 223
FbaI	TGATCA	1 cut(s)	583
Fnu4HI	GCNGC	6 cut(s)	72, 225, 233, 344, 504, 859
FokI	GGATG	3 cut(s)	41, 628, 735
FriOI	GRGCYC	1 cut(s)	843
Fsp4HI	GCNGC	6 cut(s)	72, 225, 233, 344, 504, 859
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	2 cut(s)	103, 342
GluI	GCNGC	6 cut(s)	72, 225, 233, 344, 504, 859
GsuI	CTGGAG	2 cut(s)	582, 857
HaeII	RGCGCY	1 cut(s)	105
HapII	CCGG	2 cut(s)	260, 642
HhaI	GCGC	2 cut(s)	104, 343
Hin1II	CATG	8 cut(s)	26, 65, 118, 131, 299, 442, 448, 625
Hin6I	GCGC	2 cut(s)	102, 341
HinP1I	GCGC	2 cut(s)	102, 341
HincII	GTYRAC	1 cut(s)	209
HindII	GTYRAC	1 cut(s)	209
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	3 cut(s)	250, 491, 887
HpaII	CCGG	2 cut(s)	260, 642
HphI	GGTGA	1 cut(s)	882
Hpy166II	GTNNAC	2 cut(s)	209, 788
Hpy188I	TCNGA	2 cut(s)	396, 685
Hpy188III	TCNNGA	5 cut(s)	62, 243, 530, 587, 836
Hpy8I	GTNNAC	2 cut(s)	209, 788
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	2 cut(s)	362, 510
HpyCH4III	ACNGT	5 cut(s)	273, 453, 561, 773, 920
HpyCH4V	TGCA	6 cut(s)	22, 74, 224, 497, 506, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 224, 503
HpyF3I	CTNAG	2 cut(s)	98, 512
Hsp92II	CATG	8 cut(s)	26, 65, 118, 131, 299, 442, 448, 625
HspAI	GCGC	2 cut(s)	102, 341
Ksp22I	TGATCA	1 cut(s)	583
Kzo9I	GATC	2 cut(s)	42, 583
LguI	GCTCTTC	2 cut(s)	276, 737
LmnI	GCTCC	5 cut(s)	262, 500, 655, 806, 838
Lsp1109I	GCAGC	4 cut(s)	58, 236, 244, 490
LweI	GCATC	1 cut(s)	713
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	5 cut(s)	169, 267, 334, 482, 625
MalI	GATC	2 cut(s)	44, 585
MbiI	CCGCTC	2 cut(s)	809, 858
MboI	GATC	2 cut(s)	42, 583
MboII	GAAGA	6 cut(s)	50, 293, 433, 441, 724, 938
MfeI	CAATTG	1 cut(s)	647
MhlI	GDGCHC	3 cut(s)	543, 790, 843
MluCI	AATT	6 cut(s)	324, 534, 590, 634, 647, 953
MmeI	TCCRAC	3 cut(s)	135, 145, 278
MnlI	CCTC	8 cut(s)	19, 196, 229, 402, 606, 646, 691, 862
Mph1103I	ATGCAT	1 cut(s)	24
MroXI	GAANNNNTTC	1 cut(s)	380
MseI	TTAA	3 cut(s)	302, 716, 876
MslI	CAYNNNNRTG	2 cut(s)	27, 443
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	2 cut(s)	260, 642
MspR9I	CCNGG	3 cut(s)	260, 278, 600
MunI	CAATTG	1 cut(s)	647
Mva1269I	GAATGC	1 cut(s)	83
MvaI	CCWGG	2 cut(s)	278, 600
MvnI	CGCG	1 cut(s)	343
MwoI	GCNNNNNNNGC	3 cut(s)	80, 224, 503
NciI	CCSGG	1 cut(s)	260
NdeII	GATC	2 cut(s)	42, 583
NlaIII	CATG	8 cut(s)	26, 65, 118, 131, 299, 442, 448, 625
NlaIV	GGNNCC	1 cut(s)	275
NmuCI	GTSAC	2 cut(s)	169, 334
NsiI	ATGCAT	1 cut(s)	24
PagI	TCATGA	1 cut(s)	61
PciSI	GCTCTTC	2 cut(s)	276, 737
PctI	GAATGC	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	380
PfeI	GAWTC	3 cut(s)	250, 491, 887
PflFI	GACNNNGTC	1 cut(s)	559
PfoI	TCCNGGA	1 cut(s)	276
PkrI	GCNGC	6 cut(s)	73, 226, 234, 345, 505, 860
Psp124BI	GAGCTC	1 cut(s)	843
Psp6I	CCWGG	2 cut(s)	276, 598
PspGI	CCWGG	2 cut(s)	276, 598
PspN4I	GGNNCC	1 cut(s)	275
PstI	CTGCAG	3 cut(s)	226, 499, 508
PstNI	CAGNNNCTG	1 cut(s)	503
PsyI	GACNNNGTC	1 cut(s)	559
RsaI	GTAC	2 cut(s)	290, 526
RsaNI	GTAC	2 cut(s)	289, 525
RseI	CAYNNNNRTG	2 cut(s)	27, 443
SacI	GAGCTC	1 cut(s)	843
SapI	GCTCTTC	2 cut(s)	276, 737
SaqAI	TTAA	3 cut(s)	302, 716, 876
SatI	GCNGC	6 cut(s)	72, 225, 233, 344, 504, 859
Sau3AI	GATC	2 cut(s)	42, 583
ScaI	AGTACT	1 cut(s)	526
ScrFI	CCNGG	3 cut(s)	260, 278, 600
SduI	GDGCHC	3 cut(s)	543, 790, 843
SfaNI	GCATC	1 cut(s)	713
SfcI	CTRYAG	3 cut(s)	222, 495, 504
SmiMI	CAYNNNNRTG	2 cut(s)	27, 443
SmlI	CTYRAG	1 cut(s)	851
SmoI	CTYRAG	1 cut(s)	851
Sse9I	AATT	6 cut(s)	324, 534, 590, 634, 647, 953
SsiI	CCGC	6 cut(s)	69, 216, 343, 570, 809, 858
SspI	AATATT	2 cut(s)	796, 947
SspMI	CTAG	1 cut(s)	198
SstI	GAGCTC	1 cut(s)	843
StyD4I	CCNGG	3 cut(s)	258, 276, 598
TaaI	ACNGT	5 cut(s)	273, 453, 561, 773, 920
TaqI	TCGA	3 cut(s)	41, 328, 735
TasI	AATT	6 cut(s)	324, 534, 590, 634, 647, 953
TatI	WGTACW	1 cut(s)	524
TauI	GCSGC	2 cut(s)	346, 861
TfiI	GAWTC	3 cut(s)	250, 491, 887
Tru1I	TTAA	3 cut(s)	302, 716, 876
Tru9I	TTAA	3 cut(s)	302, 716, 876
TscAI	CASTG	2 cut(s)	564, 681
TseFI	GTSAC	2 cut(s)	169, 334
TseI	GCWGC	4 cut(s)	71, 224, 232, 503
Tsp45I	GTSAC	2 cut(s)	169, 334
TspDTI	ATGAA	6 cut(s)	17, 50, 78, 126, 922, 939
TspGWI	ACGGA	1 cut(s)	306
TspRI	CASTG	2 cut(s)	564, 681
Tth111I	GACNNNGTC	1 cut(s)	559
VneI	GTGCAC	1 cut(s)	786
XapI	RAATTY	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	380
XspI	CTAG	1 cut(s)	198
ZrmI	AGTACT	1 cut(s)	526
Zsp2I	ATGCAT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.