RchiOBHm_Chr3g0454181

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
4309693 .. 4311823
2131 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42121

Sequence Viewer

Length: 261 bp
ATGAGTTCTTTCAAGTCAAAATGGAGTTTTGTGATTCCTCTATCTTTTTGGCTCCAGTCCTATTTCCAAAATCTTACCAAAGAAGTGATGAAACAAGAAATGGAAATAGCTACCAGATTGGTTGCTCGTAAGGAGGAATACGAGAGAATGTTGGAGAATGTTAGAATGTTGGAGGATGTTAAGGAGAAGTTGGAAAAGGATGAAACAAGTGAAATGGCAGAAGCTTCATTTTGGGATCACTGGGGTGTTACAAGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

10.39

Weight (kDa)

5.02

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 243
AgsI TTSAA 1 cut(s) 13
AleI CACNNNNGTG 1 cut(s) 243
AluBI AGCT 2 cut(s) 110, 224
AluI AGCT 2 cut(s) 110, 224
AlwI GGATC 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 53
BmrI ACTGGG 1 cut(s) 250
BmuI ACTGGG 1 cut(s) 250
BpmI CTGGAG 1 cut(s) 38
Bse1I ACTGG 2 cut(s) 55, 245
BseGI GGATG 2 cut(s) 181, 205
BseNI ACTGG 2 cut(s) 55, 245
Bsp143I GATC 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 53
BspPI GGATC 1 cut(s) 243
BsrI ACTGG 2 cut(s) 55, 245
BssMI GATC 1 cut(s) 235
BstF5I GGATG 2 cut(s) 181, 205
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BtsCI GGATG 2 cut(s) 181, 205
BtsIMutI CAGTG 1 cut(s) 238
CviJI RGCY 3 cut(s) 52, 110, 224
CviKI_1 RGCY 3 cut(s) 52, 110, 224
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
FokI GGATG 2 cut(s) 188, 212
GsuI CTGGAG 1 cut(s) 38
HindIII AAGCTT 1 cut(s) 222
HinfI GANTC 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 260
Kzo9I GATC 1 cut(s) 235
LmnI GCTCC 1 cut(s) 57
LpnPI CCDG 3 cut(s) 68, 127, 226
MaeIII GTNAC 1 cut(s) 247
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MmeI TCCRAC 3 cut(s) 132, 150, 171
MnlI CCTC 3 cut(s) 48, 127, 166
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 243
NdeII GATC 1 cut(s) 235
NlaIV GGNNCC 1 cut(s) 53
OliI CACNNNNGTG 1 cut(s) 243
PfeI GAWTC 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 243
SaqAI TTAA 1 cut(s) 180
Sau3AI GATC 1 cut(s) 235
SetI ASST 2 cut(s) 112, 226
SgeI CNNG 8 cut(s) 25, 67, 107, 126, 138, 154, 219, 253
SmiMI CAYNNNNRTG 1 cut(s) 243
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 1 cut(s) 245
TspDTI ATGAA 3 cut(s) 104, 216, 216
TspRI CASTG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.