Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006536.1

Orthogroup ID

OG0005209

Physical Location & Seq

Genomic Coordinates Reverse (-)

132822 .. 133667

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006536.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgagtggcctatgcttaaagcccttccatcgtatggtagaggaagagatgcagcagctggaagatactccagtctcatatttggaacaaatctcactcatgtcattgttacaggagacaatggcacaaattgatggtcaagatgagaaagaagacgaagacgaattgcaaaaccggctggttgaaactgaatttgaacaacaatgggcagatgataaggtggaagaattggaaaatgcgattcaagacagtgaacatgttcaagatcagcagaccgttattcatctttactattttagcacaatggaagataaaaagctaaaggaggtaatggtgattttagaagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000375 GO:0000377 GO:0000389 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0005829 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043900 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045595 GO:0045694 GO:0046483 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0065003 GO:0065007 GO:0070013 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DUF3449 SF3A3 SF3a60_bindingd Telomere_Sde2_2

Protein Analysis

116

Amino Acids

13.73

Weight (kDa)

4.08

Isoelectric Point (pI)

58.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005209)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0454181 RchiOBHm_Chr6g0307821
rosa_laevigata	RLG00000025477
rosa_multiflora	Rmu_sc0002277.1_g000014 Rmu_sc0002277.1_g000015 Rmu_sc0004479.1_g000007 Rmu_sc0004483.1_g000001 Rmu_sc0006536.1_g000036 Rmu_ssc0000443.1_g000025
rosa_roxburghii	Rroxscaffold_165G00436960 Rroxscaffold_1G00047680 Rroxscaffold_6G00425410
rosa_rugosa	Rorug05G0188200 Rorug07G0270700
rosa_samantha	Rh2AG431300 Rh2BG593100 Rh2CG156900 Rh2CG417200 Rh2DG449800 Rh3AG032900 Rh3AG158200 Rh3BG033100 Rh3BG182500 Rh3CG032000 Rh3CG173200 Rh3DG032900 Rh5BG425800 Rh5CG449900 Rh6AG432300 Rh7AG433200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	34
AflIII	ACRYGT	1 cut(s)	256
AgsI	TTSAA	4 cut(s)	185, 197, 245, 263
AluBI	AGCT	3 cut(s)	58, 319, 347
AluI	AGCT	3 cut(s)	58, 319, 347
Alw26I	GTCTC	2 cut(s)	79, 110
AlwNI	CAGNNNCTG	1 cut(s)	58
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	2 cut(s)	52, 55
ApoI	RAATTY	1 cut(s)	191
ArsI	GACNNNNNNTTYG	2 cut(s)	121, 153
Asp700I	GAANNNNTTC	1 cut(s)	258
AsuHPI	GGTGA	1 cut(s)	346
BaeI	ACNNNNGTAYC	2 cut(s)	57, 90
BbsI	GAAGAC	2 cut(s)	159, 165
BbvI	GCAGC	2 cut(s)	64, 67
BccI	CCATC	2 cut(s)	36, 128
BcoDI	GTCTC	2 cut(s)	79, 110
BisI	GCNGC	2 cut(s)	53, 56
BlsI	GCNGC	2 cut(s)	54, 57
BmsI	GCATC	1 cut(s)	39
BpiI	GAAGAC	2 cut(s)	159, 165
BpmI	CTGGAG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse118I	RCCGGY	1 cut(s)	174
Bse1I	ACTGG	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	71
BseXI	GCAGC	2 cut(s)	64, 67
BshFI	GGCC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	2 cut(s)	79, 110
BsnI	GGCC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	265
BspANI	GGCC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	174
BssMI	GATC	1 cut(s)	265
Bst4CI	ACNGT	2 cut(s)	251, 277
Bst6I	CTCTTC	1 cut(s)	39
BstKTI	GATC	1 cut(s)	268
BstMAI	GTCTC	2 cut(s)	79, 110
BstMBI	GATC	1 cut(s)	265
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNSI	RCATGY	1 cut(s)	260
BstV1I	GCAGC	2 cut(s)	64, 67
BstV2I	GAAGAC	2 cut(s)	159, 165
BsuRI	GGCC	1 cut(s)	9
BtsIMutI	CAGTG	1 cut(s)	256
CaiI	CAGNNNCTG	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	174
CviAII	CATG	2 cut(s)	100, 257
CviJI	RGCY	6 cut(s)	9, 22, 58, 178, 319, 347
CviKI_1	RGCY	6 cut(s)	9, 22, 58, 178, 319, 347
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
FaeI	CATG	2 cut(s)	103, 260
FaiI	YATR	5 cut(s)	13, 35, 79, 101, 258
FatI	CATG	2 cut(s)	99, 256
Fnu4HI	GCNGC	2 cut(s)	53, 56
Fsp4HI	GCNGC	2 cut(s)	53, 56
GluI	GCNGC	2 cut(s)	53, 56
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	9
HapII	CCGG	1 cut(s)	175
Hin1II	CATG	2 cut(s)	103, 260
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	1 cut(s)	241
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188III	TCNNGA	3 cut(s)	140, 245, 263
Hpy8I	GTNNAC	1 cut(s)	254
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	2 cut(s)	251, 277
HpyCH4V	TGCA	2 cut(s)	52, 169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
Hsp92II	CATG	2 cut(s)	103, 260
Kzo9I	GATC	1 cut(s)	265
LpnPI	CCDG	5 cut(s)	44, 84, 98, 164, 188
Lsp1109I	GCAGC	2 cut(s)	64, 67
LweI	GCATC	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	108
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	6 cut(s)	56, 74, 164, 170, 236, 320
MluCI	AATT	4 cut(s)	129, 164, 191, 227
MnlI	CCTC	2 cut(s)	34, 319
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	2 cut(s)	17, 349
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	1 cut(s)	175
MwoI	GCNNNNNNNGC	1 cut(s)	175
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	2 cut(s)	103, 260
NspI	RCATGY	1 cut(s)	260
PciI	ACATGT	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	241
PflMI	CCANNNNNTGG	1 cut(s)	34
PkrI	GCNGC	2 cut(s)	54, 57
PscI	ACATGT	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	58
PvuII	CAGCTG	1 cut(s)	58
SaqAI	TTAA	2 cut(s)	17, 349
SatI	GCNGC	2 cut(s)	53, 56
Sau3AI	GATC	1 cut(s)	265
SetI	ASST	5 cut(s)	60, 222, 321, 330, 349
SfaNI	GCATC	1 cut(s)	39
Sse9I	AATT	4 cut(s)	129, 164, 191, 227
TaaI	ACNGT	2 cut(s)	251, 277
TasI	AATT	4 cut(s)	129, 164, 191, 227
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	2 cut(s)	17, 349
Tru9I	TTAA	2 cut(s)	17, 349
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	2 cut(s)	52, 55
TspDTI	ATGAA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	256
Van91I	CCANNNNNTGG	1 cut(s)	34
XapI	RAATTY	1 cut(s)	191
XceI	RCATGY	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.