Rorug07G0270700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0005209
Physical Location & Seq
Reverse (-)
25564780 .. 25565337
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0270700.1

Sequence Viewer

Length: 558 bp
ATGAAGTTGACTGTACTGGAGTTGGATACTAACCAACTTTTCGGTTCTTTGCCCCAAAATATTTGTCGAGGTGGATCACTAGAATACTTTACAGCAAACAACAACAATTTGATAGGACCTATCCCCAAAAGCTTGAAAACTTGTAGCAGCTTGGTCAGACTCCGTCTCAGATGGAACCAACTCACAGGCAATATCTCTGAAGACTTTTGTGTCTATCCTCATCTTCAATTTATAGACCTAAGCCACAATAACTTCTATGGCGAAGTCTCACACACTTGGGGACAATGTCCACATTTAGCAACCCTACGGATTGCTGGAAACAAACTTACTGGTAGCATACCACCTAAGATAAGCAATGCAGCCCAAATTCATGAACTAGATCTTTCATCAAACCGTTTAGTTGGCATGATCCCAGAGCAATTGGGGAGAATGACTTCTTTGTTGAAGCTGGTGTTGAATGACAATCAAATTTGGGGTCATATACCCTCAGCATTTGGATCCTTGAATAATCTTGAATACCCAGGAACAAATTTAGCGAGTCAATTCCAAGCACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.54

Weight (kDa)

7.74

Isoelectric Point (pI)

28.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 123 - 173 3e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
AclWI GGATC 4 cut(s) 82, 403, 492, 505
AcsI RAATTY 3 cut(s) 366, 468, 529
AcuI CTGAAG 1 cut(s) 219
AfaI GTAC 1 cut(s) 15
AgsI TTSAA 6 cut(s) 136, 227, 445, 457, 505, 515
AjnI CCWGG 1 cut(s) 520
AluBI AGCT 3 cut(s) 132, 150, 448
AluI AGCT 3 cut(s) 132, 150, 448
Alw26I GTCTC 2 cut(s) 170, 271
AlwI GGATC 4 cut(s) 82, 403, 492, 505
ApeKI GCWGC 2 cut(s) 147, 359
ApoI RAATTY 3 cut(s) 366, 468, 529
ArsI GACNNNNNNTTYG 4 cut(s) 49, 81, 460, 492
Asp700I GAANNNNTTC 1 cut(s) 433
AspS9I GGNCC 1 cut(s) 116
AvaII GGWCC 1 cut(s) 116
BamHI GGATCC 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 207
BbvCI CCTCAGC 1 cut(s) 487
BbvI GCAGC 2 cut(s) 159, 371
BccI CCATC 1 cut(s) 165
BciT130I CCWGG 1 cut(s) 522
BciVI GTATCC 1 cut(s) 19
BcoDI GTCTC 2 cut(s) 170, 271
BfaI CTAG 2 cut(s) 80, 377
BfuI GTATCC 1 cut(s) 19
BglII AGATCT 1 cut(s) 379
BisI GCNGC 2 cut(s) 148, 360
BlsI GCNGC 2 cut(s) 149, 361
Bme1390I CCNGG 1 cut(s) 522
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 176, 499
BmrFI CCNGG 1 cut(s) 522
BpiI GAAGAC 1 cut(s) 207
BpmI CTGGAG 1 cut(s) 38
Bpu10I CCTNAGC 2 cut(s) 239, 487
BsaJI CCNNGG 1 cut(s) 520
Bse1I ACTGG 2 cut(s) 21, 334
Bse3DI GCAATG 1 cut(s) 361
BseBI CCWGG 1 cut(s) 522
BseDI CCNNGG 1 cut(s) 520
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 181, 501
BseNI ACTGG 2 cut(s) 21, 334
BseXI GCAGC 2 cut(s) 159, 371
BslFI GGGAC 1 cut(s) 294
BsmAI GTCTC 2 cut(s) 170, 271
BsmBI CGTCTC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 294
Bsp143I GATC 4 cut(s) 74, 379, 408, 497
BspCNI CTCAG 2 cut(s) 180, 500
BspHI TCATGA 1 cut(s) 370
BspLI GGNNCC 2 cut(s) 176, 499
BspPI GGATC 4 cut(s) 82, 403, 492, 505
BsrDI GCAATG 1 cut(s) 361
BsrI ACTGG 2 cut(s) 21, 334
BssECI CCNNGG 1 cut(s) 520
BssMI GATC 4 cut(s) 74, 379, 408, 497
Bst2UI CCWGG 1 cut(s) 522
Bst4CI ACNGT 2 cut(s) 13, 395
BstDEI CTNAG 4 cut(s) 167, 239, 345, 487
BstKTI GATC 4 cut(s) 77, 382, 411, 500
BstMAI GTCTC 2 cut(s) 170, 271
BstMBI GATC 4 cut(s) 74, 379, 408, 497
BstNI CCWGG 1 cut(s) 522
BstSCI CCNGG 1 cut(s) 520
BstV1I GCAGC 2 cut(s) 159, 371
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 2 cut(s) 379, 497
BstYI RGATCY 2 cut(s) 379, 497
BsuI GTATCC 1 cut(s) 19
CciI TCATGA 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 14
CviAII CATG 2 cut(s) 371, 406
CviJI RGCY 5 cut(s) 132, 150, 243, 362, 448
CviKI_1 RGCY 5 cut(s) 132, 150, 243, 362, 448
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 4 cut(s) 167, 239, 345, 487
DpnI GATC 4 cut(s) 76, 381, 410, 499
DpnII GATC 4 cut(s) 74, 379, 408, 497
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 219
EcoO109I RGGNCCY 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 520
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 2 cut(s) 374, 409
FaiI YATR 7 cut(s) 233, 258, 338, 372, 407, 480, 482
FaqI GGGAC 1 cut(s) 294
FatI CATG 2 cut(s) 370, 405
Fnu4HI GCNGC 2 cut(s) 148, 360
Fsp4HI GCNGC 2 cut(s) 148, 360
FspBI CTAG 2 cut(s) 80, 377
GluI GCNGC 2 cut(s) 148, 360
GsuI CTGGAG 1 cut(s) 38
Hin1II CATG 2 cut(s) 374, 409
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HindIII AAGCTT 1 cut(s) 130
HinfI GANTC 2 cut(s) 159, 538
Hpy166II GTNNAC 2 cut(s) 9, 290
Hpy188I TCNGA 3 cut(s) 158, 170, 199
Hpy188III TCNNGA 2 cut(s) 371, 512
Hpy8I GTNNAC 2 cut(s) 9, 290
HpyCH4III ACNGT 2 cut(s) 13, 395
HpyCH4V TGCA 1 cut(s) 359
HpyF3I CTNAG 4 cut(s) 167, 239, 345, 487
Hsp92II CATG 2 cut(s) 374, 409
Kzo9I GATC 4 cut(s) 74, 379, 408, 497
LpnPI CCDG 8 cut(s) 2, 171, 300, 315, 426, 434, 507, 534
Lsp1109I GCAGC 2 cut(s) 159, 371
MaeI CTAG 2 cut(s) 80, 377
MalI GATC 4 cut(s) 76, 381, 410, 499
MboI GATC 4 cut(s) 74, 379, 408, 497
MboII GAAGA 2 cut(s) 212, 215
MfeI CAATTG 1 cut(s) 419
MflI RGATCY 2 cut(s) 379, 497
MluCI AATT 7 cut(s) 106, 227, 366, 419, 468, 529, 542
MlyI GAGTC 2 cut(s) 153, 547
MnlI CCTC 3 cut(s) 62, 228, 496
MroXI GAANNNNTTC 1 cut(s) 433
MspR9I CCNGG 1 cut(s) 522
MunI CAATTG 1 cut(s) 419
MvaI CCWGG 1 cut(s) 522
NdeII GATC 4 cut(s) 74, 379, 408, 497
NlaIII CATG 2 cut(s) 374, 409
NlaIV GGNNCC 2 cut(s) 176, 499
PagI TCATGA 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 433
PflFI GACNNNGTC 2 cut(s) 162, 285
PkrI GCNGC 2 cut(s) 149, 361
PleI GAGTC 2 cut(s) 153, 546
PpsI GAGTC 2 cut(s) 153, 546
PpuMI RGGWCCY 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 520
PspGI CCWGG 1 cut(s) 520
PspN4I GGNNCC 2 cut(s) 176, 499
PspPI GGNCC 1 cut(s) 116
PspPPI RGGWCCY 1 cut(s) 116
PsuI RGATCY 2 cut(s) 379, 497
PsyI GACNNNGTC 2 cut(s) 162, 285
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
SatI GCNGC 2 cut(s) 148, 360
Sau3AI GATC 4 cut(s) 74, 379, 408, 497
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 2 cut(s) 153, 547
ScrFI CCNGG 1 cut(s) 522
SetI ASST 7 cut(s) 73, 121, 134, 152, 240, 346, 450
SinI GGWCC 1 cut(s) 116
Sse9I AATT 7 cut(s) 106, 227, 366, 419, 468, 529, 542
SspI AATATT 1 cut(s) 61
SspMI CTAG 2 cut(s) 80, 377
StyD4I CCNGG 1 cut(s) 520
TaaI ACNGT 2 cut(s) 13, 395
TaqI TCGA 1 cut(s) 67
TasI AATT 7 cut(s) 106, 227, 366, 419, 468, 529, 542
TatI WGTACW 1 cut(s) 13
TseI GCWGC 2 cut(s) 147, 359
TspDTI ATGAA 4 cut(s) 17, 359, 375, 387
TspGWI ACGGA 2 cut(s) 152, 322
Tth111I GACNNNGTC 2 cut(s) 162, 285
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 3 cut(s) 366, 468, 529
XmnI GAANNNNTTC 1 cut(s) 433
XspI CTAG 2 cut(s) 80, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.