Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005209

Physical Location & Seq

Genomic Coordinates Reverse (-)

67432278 .. 67434407

Gene Structure 2130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00047680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGCAGCCAGGAACGATCTGATATTGAACCCAAATGTAGCGGAAGCCTTCCACAACTCCACAAGTTTGGCTCAATCACAACTGATGATTCAATATGGTCTGAGGGTGTTGCATCTACTAGCCGAGGATTAAAGCAGAACGTGGACTTGAAGGTGATTCTTTCCGATGCAAATGTTCCAGGTGAAGGGGAGCAGAAGGTTATGTCATACATTTGTCTTCAAAGAAATCCCTTGGCCAAAACAACCACTTTGGAGAAACTGGAAGCTAATATCAAGACCAGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000291 GO:0000902 GO:0000932 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009826 GO:0009888 GO:0009892 GO:0009987 GO:0010087 GO:0010286 GO:0010468 GO:0010494 GO:0010586 GO:0010587 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0031086 GO:0031087 GO:0032502 GO:0032989 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035770 GO:0036464 GO:0040007 GO:0040029 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0051301 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070370 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 ko04016 map03008 map03018 map04016

Pfam Domains

Protein Families

XRN_N

Protein Analysis

95

Amino Acids

10.36

Weight (kDa)

6.56

Isoelectric Point (pI)

57.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_N	PF03159	49 - 76	9.5e-08	XRN 5'-3' exonuclease N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005209)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0454181 RchiOBHm_Chr6g0307821
rosa_laevigata	RLG00000025477
rosa_multiflora	Rmu_sc0002277.1_g000014 Rmu_sc0002277.1_g000015 Rmu_sc0004479.1_g000007 Rmu_sc0004483.1_g000001 Rmu_sc0006536.1_g000036 Rmu_ssc0000443.1_g000025
rosa_roxburghii	Rroxscaffold_165G00436960 Rroxscaffold_1G00047680 Rroxscaffold_6G00425410
rosa_rugosa	Rorug05G0188200 Rorug07G0270700
rosa_samantha	Rh2AG431300 Rh2BG593100 Rh2CG156900 Rh2CG417200 Rh2DG449800 Rh3AG032900 Rh3AG158200 Rh3BG033100 Rh3BG182500 Rh3CG032000 Rh3CG173200 Rh3DG032900 Rh5BG425800 Rh5CG449900 Rh6AG432300 Rh7AG433200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	42
AcoI	YGGCCR	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	4 cut(s)	29, 93, 151, 221
AjnI	CCWGG	2 cut(s)	9, 178
AluBI	AGCT	2 cut(s)	266, 285
AluI	AGCT	2 cut(s)	266, 285
AoxI	GGCC	1 cut(s)	234
ApeKI	GCWGC	1 cut(s)	6
AsuHPI	GGTGA	2 cut(s)	166, 194
BalI	TGGCCA	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	18
BciT130I	CCWGG	2 cut(s)	11, 180
BfaI	CTAG	1 cut(s)	120
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
Bme1390I	CCNGG	2 cut(s)	11, 180
BmrFI	CCNGG	2 cut(s)	11, 180
BmsI	GCATC	2 cut(s)	122, 157
BpiI	GAAGAC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	124, 231
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	264
BseBI	CCWGG	2 cut(s)	11, 180
BseDI	CCNNGG	2 cut(s)	124, 231
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	18
BshFI	GGCC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	185
BsnI	GGCC	1 cut(s)	236
Bsp143I	GATC	1 cut(s)	17
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	1 cut(s)	236
BspCNI	CTCAG	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	264
BssECI	CCNNGG	2 cut(s)	124, 231
BssMI	GATC	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	11, 180
BstDEI	CTNAG	1 cut(s)	102
BstKTI	GATC	1 cut(s)	20
BstMBI	GATC	1 cut(s)	17
BstNI	CCWGG	2 cut(s)	11, 180
BstSCI	CCNGG	2 cut(s)	9, 178
BstV1I	GCAGC	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	209
BstXI	CCANNNNNNTGG	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	236
CviJI	RGCY	7 cut(s)	9, 48, 72, 123, 236, 266, 285
CviKI_1	RGCY	7 cut(s)	9, 48, 72, 123, 236, 266, 285
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	231
EcoRII	CCWGG	2 cut(s)	9, 178
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaiI	YATR	3 cut(s)	97, 203, 208
Fnu4HI	GCNGC	1 cut(s)	7
Fsp4HI	GCNGC	1 cut(s)	7
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	1 cut(s)	7
HaeIII	GGCC	1 cut(s)	236
HinfI	GANTC	2 cut(s)	89, 157
HphI	GGTGA	2 cut(s)	166, 194
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	3 cut(s)	22, 103, 166
Hpy188III	TCNNGA	1 cut(s)	274
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	4 cut(s)	59, 145, 179, 190
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	2 cut(s)	113, 170
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	141
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	4 cut(s)	23, 165, 192, 245
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	2 cut(s)	122, 157
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	1 cut(s)	141
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	1 cut(s)	209
MlsI	TGGCCA	1 cut(s)	236
MluNI	TGGCCA	1 cut(s)	236
MnlI	CCTC	2 cut(s)	97, 119
Mox20I	TGGCCA	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	1 cut(s)	131
Msp20I	TGGCCA	1 cut(s)	236
MspR9I	CCNGG	2 cut(s)	11, 180
MvaI	CCWGG	2 cut(s)	11, 180
NdeII	GATC	1 cut(s)	17
NmeAIII	GCCGAG	1 cut(s)	149
PfeI	GAWTC	2 cut(s)	89, 157
PkrI	GCNGC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	9, 178
PspGI	CCWGG	2 cut(s)	9, 178
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	1 cut(s)	7
Sau3AI	GATC	1 cut(s)	17
ScrFI	CCNGG	2 cut(s)	11, 180
SetI	ASST	6 cut(s)	144, 156, 184, 201, 268, 287
SfaNI	GCATC	2 cut(s)	122, 157
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	9, 178
StyI	CCWWGG	1 cut(s)	231
TaiI	ACGT	1 cut(s)	144
TfiI	GAWTC	2 cut(s)	89, 157
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TseI	GCWGC	1 cut(s)	6
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.