pentatricopeptide repeat-containing protein At5g06400
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0454181 RchiOBHm_Chr6g0307821 |
| rosa_laevigata | RLG00000025477 |
| rosa_multiflora | Rmu_sc0002277.1_g000014 Rmu_sc0002277.1_g000015 Rmu_sc0004479.1_g000007 Rmu_sc0004483.1_g000001 Rmu_sc0006536.1_g000036 Rmu_ssc0000443.1_g000025 |
| rosa_roxburghii | Rroxscaffold_165G00436960 Rroxscaffold_1G00047680 Rroxscaffold_6G00425410 |
| rosa_rugosa | Rorug05G0188200 Rorug07G0270700 |
| rosa_samantha | Rh2AG431300 Rh2BG593100 Rh2CG156900 Rh2CG417200 Rh2DG449800 Rh3AG032900 Rh3AG158200 Rh3BG033100 Rh3BG182500 Rh3CG032000 Rh3CG173200 Rh3DG032900 Rh5BG425800 Rh5CG449900 Rh6AG432300 Rh7AG433200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 48 |
| AfaI | GTAC | 1 cut(s) | 344 |
| AgsI | TTSAA | 4 cut(s) | 187, 254, 356, 502 |
| AluBI | AGCT | 5 cut(s) | 7, 93, 143, 383, 403 |
| AluI | AGCT | 5 cut(s) | 7, 93, 143, 383, 403 |
| Alw26I | GTCTC | 1 cut(s) | 437 |
| Ama87I | CYCGRG | 1 cut(s) | 431 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 393 |
| AspS9I | GGNCC | 1 cut(s) | 281 |
| AsuC2I | CCSGG | 2 cut(s) | 432, 433 |
| AsuHPI | GGTGA | 2 cut(s) | 329, 463 |
| AvaI | CYCGRG | 1 cut(s) | 431 |
| AvaII | GGWCC | 1 cut(s) | 281 |
| BccI | CCATC | 2 cut(s) | 26, 38 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 294, 328 |
| BcnI | CCSGG | 2 cut(s) | 432, 433 |
| BcoDI | GTCTC | 1 cut(s) | 437 |
| Bme1390I | CCNGG | 2 cut(s) | 432, 433 |
| Bme18I | GGWCC | 1 cut(s) | 281 |
| BmeT110I | CYCGRG | 1 cut(s) | 431 |
| BmgT120I | GGNCC | 1 cut(s) | 281 |
| BmrFI | CCNGG | 2 cut(s) | 432, 433 |
| BmsI | GCATC | 2 cut(s) | 292, 475 |
| BpuEI | CTTGAG | 1 cut(s) | 389 |
| BpuMI | CCSGG | 2 cut(s) | 432, 433 |
| BsaJI | CCNNGG | 2 cut(s) | 277, 431 |
| BseDI | CCNNGG | 2 cut(s) | 277, 431 |
| BseGI | GGATG | 5 cut(s) | 19, 37, 49, 196, 220 |
| BsgI | GTGCAG | 1 cut(s) | 484 |
| BsiHKCI | CYCGRG | 1 cut(s) | 431 |
| BsiSI | CCGG | 1 cut(s) | 432 |
| BsmAI | GTCTC | 1 cut(s) | 437 |
| BsmI | GAATGC | 1 cut(s) | 176 |
| BsoBI | CYCGRG | 1 cut(s) | 431 |
| BspACI | CCGC | 1 cut(s) | 48 |
| BssECI | CCNNGG | 2 cut(s) | 277, 431 |
| BssT1I | CCWWGG | 1 cut(s) | 277 |
| Bst4CI | ACNGT | 1 cut(s) | 462 |
| BstC8I | GCNNGC | 1 cut(s) | 401 |
| BstF5I | GGATG | 5 cut(s) | 19, 37, 49, 196, 220 |
| BstMAI | GTCTC | 1 cut(s) | 437 |
| BstSCI | CCNGG | 2 cut(s) | 430, 431 |
| BtsCI | GGATG | 5 cut(s) | 19, 37, 49, 196, 220 |
| Cac8I | GCNNGC | 1 cut(s) | 401 |
| Cfr13I | GGNCC | 1 cut(s) | 281 |
| Cfr9I | CCCGGG | 1 cut(s) | 431 |
| Csp6I | GTAC | 1 cut(s) | 343 |
| CviJI | RGCY | 6 cut(s) | 7, 93, 143, 383, 403, 470 |
| CviKI_1 | RGCY | 6 cut(s) | 7, 93, 143, 383, 403, 470 |
| CviQI | GTAC | 1 cut(s) | 343 |
| Eco130I | CCWWGG | 1 cut(s) | 277 |
| Eco47I | GGWCC | 1 cut(s) | 281 |
| Eco88I | CYCGRG | 1 cut(s) | 431 |
| EcoT14I | CCWWGG | 1 cut(s) | 277 |
| ErhI | CCWWGG | 1 cut(s) | 277 |
| FaiI | YATR | 6 cut(s) | 11, 261, 338, 393, 422, 509 |
| FokI | GGATG | 5 cut(s) | 26, 44, 56, 203, 227 |
| HapII | CCGG | 1 cut(s) | 432 |
| HindIII | AAGCTT | 1 cut(s) | 381 |
| HinfI | GANTC | 4 cut(s) | 19, 69, 272, 372 |
| HpaII | CCGG | 1 cut(s) | 432 |
| HphI | GGTGA | 2 cut(s) | 329, 463 |
| Hpy166II | GTNNAC | 1 cut(s) | 541 |
| Hpy188I | TCNGA | 3 cut(s) | 24, 68, 377 |
| Hpy188III | TCNNGA | 1 cut(s) | 406 |
| Hpy8I | GTNNAC | 1 cut(s) | 541 |
| HpyAV | CCTTC | 4 cut(s) | 22, 181, 314, 325 |
| HpyCH4III | ACNGT | 1 cut(s) | 462 |
| HpyCH4V | TGCA | 3 cut(s) | 305, 465, 482 |
| LmnI | GCTCC | 2 cut(s) | 4, 325 |
| LpnPI | CCDG | 4 cut(s) | 160, 297, 445, 451 |
| LweI | GCATC | 2 cut(s) | 292, 475 |
| MboII | GAAGA | 6 cut(s) | 37, 341, 344, 356, 419, 523 |
| MluCI | AATT | 1 cut(s) | 267 |
| MmeI | TCCRAC | 2 cut(s) | 124, 186 |
| MnlI | CCTC | 4 cut(s) | 34, 160, 280, 409 |
| MroXI | GAANNNNTTC | 1 cut(s) | 393 |
| MseI | TTAA | 1 cut(s) | 195 |
| MspI | CCGG | 1 cut(s) | 432 |
| MspR9I | CCNGG | 2 cut(s) | 432, 433 |
| Mva1269I | GAATGC | 1 cut(s) | 176 |
| NciI | CCSGG | 2 cut(s) | 432, 433 |
| PctI | GAATGC | 1 cut(s) | 176 |
| PdmI | GAANNNNTTC | 1 cut(s) | 393 |
| PfeI | GAWTC | 4 cut(s) | 19, 69, 272, 372 |
| PspPI | GGNCC | 1 cut(s) | 281 |
| RsaI | GTAC | 1 cut(s) | 344 |
| RsaNI | GTAC | 1 cut(s) | 343 |
| SaqAI | TTAA | 1 cut(s) | 195 |
| Sau96I | GGNCC | 1 cut(s) | 281 |
| ScrFI | CCNGG | 2 cut(s) | 432, 433 |
| SetI | ASST | 9 cut(s) | 9, 95, 145, 249, 291, 336, 385, 405, 420 |
| SfaNI | GCATC | 2 cut(s) | 292, 475 |
| SinI | GGWCC | 1 cut(s) | 281 |
| SmaI | CCCGGG | 1 cut(s) | 433 |
| SmlI | CTYRAG | 1 cut(s) | 404 |
| SmoI | CTYRAG | 1 cut(s) | 404 |
| Sse9I | AATT | 1 cut(s) | 267 |
| SsiI | CCGC | 1 cut(s) | 48 |
| SspI | AATATT | 1 cut(s) | 505 |
| StyD4I | CCNGG | 2 cut(s) | 430, 431 |
| StyI | CCWWGG | 1 cut(s) | 277 |
| TaaI | ACNGT | 1 cut(s) | 462 |
| TasI | AATT | 1 cut(s) | 267 |
| TfiI | GAWTC | 4 cut(s) | 19, 69, 272, 372 |
| Tru1I | TTAA | 1 cut(s) | 195 |
| Tru9I | TTAA | 1 cut(s) | 195 |
| TspDTI | ATGAA | 3 cut(s) | 137, 231, 524 |
| TspGWI | ACGGA | 1 cut(s) | 149 |
| TspMI | CCCGGG | 1 cut(s) | 431 |
| VpaK11BI | GGWCC | 1 cut(s) | 281 |
| XmaI | CCCGGG | 1 cut(s) | 431 |
| XmnI | GAANNNNTTC | 1 cut(s) | 393 |