Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013898

Physical Location & Seq

Genomic Coordinates Reverse (-)

12132698 .. 12133754

Gene Structure 1057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43149

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGCTAATTGGAGGATCCTCTGCCTTTATAATTAAGCGACGTGGTCGAAACGTTGCAAGATCAGCAAAGTCTAGCTTGGCAAAGTTCAGAGAAGACATACTAAATGCTAACAGTAGTACTGGCAAATCAGCCAAGAATTTCACAGGCAAAGAAATCACAAAAGCAACCAACAACTTCTCCAAAGACAACCTTCTTGGCTCCGGTGGCTTTGGCGATGTCTTCAAGGCCACACTTGACGATGGAACTGTCACAGCAGTGAAGAAAGCCAAGGCTGGAAACATAAAGGGCATCGATCAAATTCTCAACGAAGTTCGAATTCTTTGCCAAGTAAACCACAGAAGCCTAGTCAGATTAATGGGTTGTTGTCTTGAGCTTGAACAACCGCTTTTAATCTACGAGTACGTATGTCCCAAACGGGTATCACTAACTTGGGCCACGAGGCTCACCATTGCTCACCGAACTGCTGAAGGACTTGCCTATCTGCACGATTCAGTCGAGCCAAGGATTTACCACCGTGACATAAAGTCGAGCAACATTTTACTCGATGAAAAGCTCAACGCTAAGGTTGCTGATTTTGGTCTGTCGAGGTTGGCCGTGACCGAATCAAGTCACATTACAACATGTGCTCAGGGAACCTTGGGGTACCTAGACCCCGACTATTACTTGAACTTTCAATTGACAGACAAGAGTGATGTCTATAGCTTCGGAGTTGTGTTGTTAGAGCTGTTGACTGGTAAGAAAGCTATTGATTTTAACAGACAAGAAGACGACGTGAACTTGGTGGTTTATGTCGAGAACATTTTAAGGGAAGACAGACTAAATGATGCCATTGAACCTAAGCTTAAAGAGGAGGCTGGCACAATGGCTCTGGAGACTATGAAGGCATTAGGGTCTCTGGCAGCTGCATGCTTGGATGAGAGGAGGCAAAATCGACCCTCCATGAAAGAAGTTGCTGATGAAATTGAGTACATTATTAGTATCGTTACAAATGAGGTTTCAGCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

335

Amino Acids

37.06

Weight (kDa)

6.96

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	60 - 318	2.3e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	62 - 320	4.4e-37	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53840
malus_domestica	MD12G1149600.v1.1
prunus_persica	Prupe.6G261100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0465331 RchiOBHm_Chr3g0465341
rosa_laevigata	RLG00000024646
rosa_multiflora	Rmu_co8329097.1_g000001 Rmu_co8386781.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415120
rosa_rugosa	Rorug03G0076200 Rorug03G0076300
rosa_samantha	Rh3BG141100 Rh3CG142000 Rh3CG142100 Rh3DG142100 Rh3DG142200
rosa_wichuraiana	Rw3G011540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	29
Acc65I	GGTACC	1 cut(s)	642
AccB1I	GGYRCC	1 cut(s)	642
AciI	CCGC	1 cut(s)	383
AclI	AACGTT	1 cut(s)	51
AclWI	GGATC	2 cut(s)	9, 22
AcoI	YGGCCR	1 cut(s)	591
AcsI	RAATTY	3 cut(s)	136, 297, 315
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	4 cut(s)	118, 401, 644, 968
AflIII	ACRYGT	1 cut(s)	620
AgsI	TTSAA	5 cut(s)	223, 377, 667, 674, 833
AhdI	GACNNNNNGTC	1 cut(s)	523
AjiI	CACGTC	2 cut(s)	41, 772
AleI	CACNNNNGTG	1 cut(s)	254
AluBI	AGCT	8 cut(s)	75, 373, 553, 702, 724, 743, 841, 902
AluI	AGCT	8 cut(s)	75, 373, 553, 702, 724, 743, 841, 902
Alw21I	GWGCWC	1 cut(s)	628
Alw26I	GTCTC	2 cut(s)	866, 897
AlwI	GGATC	2 cut(s)	9, 22
AoxI	GGCC	3 cut(s)	225, 432, 591
ApeKI	GCWGC	2 cut(s)	899, 902
ApoI	RAATTY	3 cut(s)	136, 297, 315
AseI	ATTAAT	1 cut(s)	353
Asp718I	GGTACC	1 cut(s)	642
AspS9I	GGNCC	1 cut(s)	432
AsuHPI	GGTGA	2 cut(s)	436, 446
AsuII	TTCGAA	1 cut(s)	313
BamHI	GGATCC	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	642
BauI	CACGAG	1 cut(s)	436
BbsI	GAAGAC	4 cut(s)	99, 211, 771, 816
Bbv12I	GWGCWC	1 cut(s)	628
BbvI	GCAGC	2 cut(s)	889, 911
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	578
BcgI	CGANNNNNNTGC	2 cut(s)	303, 337
BcoDI	GTCTC	2 cut(s)	866, 897
BfaI	CTAG	3 cut(s)	72, 344, 647
BfmI	CTRYAG	1 cut(s)	697
BisI	GCNGC	2 cut(s)	900, 903
BlsI	GCNGC	2 cut(s)	901, 904
BmcAI	AGTACT	1 cut(s)	118
BmeRI	GACNNNNNGTC	1 cut(s)	523
BmgBI	CACGTC	2 cut(s)	41, 772
BmgT120I	GGNCC	1 cut(s)	432
BmiI	GGNNCC	4 cut(s)	16, 199, 634, 644
BmsI	GCATC	2 cut(s)	297, 814
BpiI	GAAGAC	4 cut(s)	99, 211, 771, 816
BpmI	CTGGAG	1 cut(s)	890
Bpu10I	CCTNAGC	3 cut(s)	561, 627, 837
Bpu14I	TTCGAA	1 cut(s)	313
BpuEI	CTTGAG	1 cut(s)	389
Bsa29I	ATCGAT	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	403
BsaI	GGTCTC	1 cut(s)	897
BsaJI	CCNNGG	3 cut(s)	267, 500, 636
BsaWI	WCCGGW	1 cut(s)	200
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bse1I	ACTGG	2 cut(s)	124, 736
Bse3DI	GCAATG	1 cut(s)	447
BseCI	ATCGAT	1 cut(s)	291
BseDI	CCNNGG	3 cut(s)	267, 500, 636
BseGI	GGATG	1 cut(s)	919
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	1 cut(s)	641
BseNI	ACTGG	2 cut(s)	124, 736
BseRI	GAGGAG	2 cut(s)	863, 934
BseXI	GCAGC	2 cut(s)	889, 911
BsgI	GTGCAG	1 cut(s)	467
BshFI	GGCC	3 cut(s)	227, 434, 593
BshNI	GGYRCC	1 cut(s)	642
BshVI	ATCGAT	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	628
BsiSI	CCGG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	393
BsmAI	GTCTC	2 cut(s)	866, 897
BsmFI	GGGAC	1 cut(s)	393
BsnI	GGCC	3 cut(s)	227, 434, 593
Bso31I	GGTCTC	1 cut(s)	897
Bsp119I	TTCGAA	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp143I	GATC	3 cut(s)	14, 59, 292
BspACI	CCGC	1 cut(s)	383
BspANI	GGCC	3 cut(s)	227, 434, 593
BspCNI	CTCAG	1 cut(s)	640
BspDI	ATCGAT	1 cut(s)	291
BspLI	GGNNCC	4 cut(s)	16, 199, 634, 644
BspPI	GGATC	2 cut(s)	9, 22
BspT104I	TTCGAA	1 cut(s)	313
BspT107I	GGYRCC	1 cut(s)	642
BspTNI	GGTCTC	1 cut(s)	897
BsrDI	GCAATG	1 cut(s)	447
BsrI	ACTGG	2 cut(s)	124, 736
BssECI	CCNNGG	3 cut(s)	267, 500, 636
BssMI	GATC	3 cut(s)	14, 59, 292
BssSI	CACGAG	1 cut(s)	436
BssT1I	CCWWGG	3 cut(s)	267, 500, 636
Bst2BI	CACGAG	1 cut(s)	436
Bst4CI	ACNGT	3 cut(s)	113, 247, 515
BstBAI	YACGTR	1 cut(s)	403
BstBI	TTCGAA	1 cut(s)	313
BstC8I	GCNNGC	2 cut(s)	856, 907
BstDEI	CTNAG	3 cut(s)	561, 627, 837
BstF5I	GGATG	1 cut(s)	919
BstKTI	GATC	3 cut(s)	17, 62, 295
BstMAI	GTCTC	2 cut(s)	866, 897
BstMBI	GATC	3 cut(s)	14, 59, 292
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 204, 566
BstNSI	RCATGY	2 cut(s)	624, 909
BstSFI	CTRYAG	1 cut(s)	697
BstSNI	TACGTA	1 cut(s)	403
BstV1I	GCAGC	2 cut(s)	889, 911
BstV2I	GAAGAC	4 cut(s)	99, 211, 771, 816
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
Bsu15I	ATCGAT	1 cut(s)	291
BsuRI	GGCC	3 cut(s)	227, 434, 593
BsuTUI	ATCGAT	1 cut(s)	291
BtgZI	GCGATG	1 cut(s)	228
BtrI	CACGTC	2 cut(s)	41, 772
BtsCI	GGATG	1 cut(s)	919
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	2 cut(s)	856, 907
Cfr13I	GGNCC	1 cut(s)	432
ClaI	ATCGAT	1 cut(s)	291
Csp6I	GTAC	4 cut(s)	117, 400, 643, 967
CviAII	CATG	3 cut(s)	621, 906, 940
CviQI	GTAC	4 cut(s)	117, 400, 643, 967
DdeI	CTNAG	3 cut(s)	561, 627, 837
DpnI	GATC	3 cut(s)	16, 61, 294
DpnII	GATC	3 cut(s)	14, 59, 292
DriI	GACNNNNNGTC	1 cut(s)	523
EaeI	YGGCCR	1 cut(s)	591
Eam1105I	GACNNNNNGTC	1 cut(s)	523
Eco105I	TACGTA	1 cut(s)	403
Eco130I	CCWWGG	3 cut(s)	267, 500, 636
Eco31I	GGTCTC	1 cut(s)	897
Eco57I	CTGAAG	1 cut(s)	486
EcoRI	GAATTC	1 cut(s)	315
EcoT14I	CCWWGG	3 cut(s)	267, 500, 636
ErhI	CCWWGG	3 cut(s)	267, 500, 636
FaeI	CATG	3 cut(s)	624, 909, 943
FalI	AAGNNNNNCTT	4 cut(s)	59, 91, 174, 206
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	3 cut(s)	620, 905, 939
Fnu4HI	GCNGC	2 cut(s)	900, 903
FokI	GGATG	1 cut(s)	926
Fsp4HI	GCNGC	2 cut(s)	900, 903
FspBI	CTAG	3 cut(s)	72, 344, 647
GluI	GCNGC	2 cut(s)	900, 903
GsuI	CTGGAG	1 cut(s)	890
HaeIII	GGCC	3 cut(s)	227, 434, 593
HapII	CCGG	1 cut(s)	201
Hin1II	CATG	3 cut(s)	624, 909, 943
HincII	GTYRAC	1 cut(s)	729
HindII	GTYRAC	1 cut(s)	729
HindIII	AAGCTT	1 cut(s)	839
HinfI	GANTC	2 cut(s)	488, 602
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	2 cut(s)	436, 446
Hpy166II	GTNNAC	3 cut(s)	331, 729, 775
Hpy188I	TCNGA	3 cut(s)	89, 350, 707
Hpy188III	TCNNGA	3 cut(s)	368, 793, 869
Hpy8I	GTNNAC	3 cut(s)	331, 729, 775
Hpy99I	CGWCG	2 cut(s)	42, 773
HpyAV	CCTTC	3 cut(s)	200, 461, 874
HpyCH4III	ACNGT	3 cut(s)	113, 247, 515
HpyCH4IV	ACGT	4 cut(s)	40, 51, 402, 771
HpyCH4V	TGCA	3 cut(s)	56, 484, 905
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 204, 566
HpyF3I	CTNAG	3 cut(s)	561, 627, 837
HpySE526I	ACGT	4 cut(s)	40, 51, 402, 771
Hsp92II	CATG	3 cut(s)	624, 909, 943
KpnI	GGTACC	1 cut(s)	646
Kzo9I	GATC	3 cut(s)	14, 59, 292
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	9 cut(s)	105, 129, 214, 258, 614, 717, 840, 854, 881
Lsp1109I	GCAGC	2 cut(s)	889, 911
LweI	GCATC	2 cut(s)	297, 814
MaeI	CTAG	3 cut(s)	72, 344, 647
MaeII	ACGT	4 cut(s)	40, 51, 402, 771
MaeIII	GTNAC	5 cut(s)	247, 515, 595, 608, 982
MalI	GATC	3 cut(s)	16, 61, 294
MboI	GATC	3 cut(s)	14, 59, 292
MboII	GAAGA	5 cut(s)	104, 211, 271, 776, 821
MfeI	CAATTG	1 cut(s)	674
MflI	RGATCY	1 cut(s)	14
MhlI	GDGCHC	1 cut(s)	628
MluCI	AATT	7 cut(s)	6, 30, 136, 297, 315, 674, 960
MseI	TTAA	7 cut(s)	33, 353, 389, 753, 803, 843, 1006
MslI	CAYNNNNRTG	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	902
MspI	CCGG	1 cut(s)	201
MunI	CAATTG	1 cut(s)	674
MwoI	GCNNNNNNNGC	3 cut(s)	62, 204, 566
NdeII	GATC	3 cut(s)	14, 59, 292
NlaIII	CATG	3 cut(s)	624, 909, 943
NlaIV	GGNNCC	4 cut(s)	16, 199, 634, 644
NmuCI	GTSAC	4 cut(s)	247, 515, 595, 608
NspI	RCATGY	2 cut(s)	624, 909
NspV	TTCGAA	1 cut(s)	313
OliI	CACNNNNGTG	1 cut(s)	254
PaeI	GCATGC	1 cut(s)	909
PciI	ACATGT	1 cut(s)	620
PcsI	WCGNNNNNNNCGW	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	488, 602
PflFI	GACNNNGTC	1 cut(s)	42
PkrI	GCNGC	2 cut(s)	901, 904
Ppu21I	YACGTR	1 cut(s)	403
PscI	ACATGT	1 cut(s)	620
PshBI	ATTAAT	1 cut(s)	353
PsiI	TTATAA	1 cut(s)	29
Psp1406I	AACGTT	1 cut(s)	51
PspN4I	GGNNCC	4 cut(s)	16, 199, 634, 644
PspPI	GGNCC	1 cut(s)	432
PsuI	RGATCY	1 cut(s)	14
PsyI	GACNNNGTC	1 cut(s)	42
PvuII	CAGCTG	1 cut(s)	902
RsaI	GTAC	4 cut(s)	118, 401, 644, 968
RsaNI	GTAC	4 cut(s)	117, 400, 643, 967
RseI	CAYNNNNRTG	1 cut(s)	254
SaqAI	TTAA	7 cut(s)	33, 353, 389, 753, 803, 843, 1006
SatI	GCNGC	2 cut(s)	900, 903
Sau3AI	GATC	3 cut(s)	14, 59, 292
Sau96I	GGNCC	1 cut(s)	432
ScaI	AGTACT	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	628
SfaNI	GCATC	2 cut(s)	297, 814
SfcI	CTRYAG	1 cut(s)	697
SfuI	TTCGAA	1 cut(s)	313
SmiMI	CAYNNNNRTG	1 cut(s)	254
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
SnaBI	TACGTA	1 cut(s)	403
SphI	GCATGC	1 cut(s)	909
Sse9I	AATT	7 cut(s)	6, 30, 136, 297, 315, 674, 960
SsiI	CCGC	1 cut(s)	383
SspMI	CTAG	3 cut(s)	72, 344, 647
StyI	CCWWGG	3 cut(s)	267, 500, 636
TaaI	ACNGT	3 cut(s)	113, 247, 515
TaiI	ACGT	4 cut(s)	43, 54, 405, 774
TaqI	TCGA	9 cut(s)	46, 291, 313, 495, 527, 543, 584, 792, 931
TaqII	GACCGA	1 cut(s)	614
TasI	AATT	7 cut(s)	6, 30, 136, 297, 315, 674, 960
TatI	WGTACW	2 cut(s)	116, 966
TfiI	GAWTC	2 cut(s)	488, 602
Tru1I	TTAA	7 cut(s)	33, 353, 389, 753, 803, 843, 1006
Tru9I	TTAA	7 cut(s)	33, 353, 389, 753, 803, 843, 1006
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	4 cut(s)	247, 515, 595, 608
TseI	GCWGC	2 cut(s)	899, 902
Tsp45I	GTSAC	4 cut(s)	247, 515, 595, 608
TspDTI	ATGAA	4 cut(s)	561, 893, 956, 972
TspRI	CASTG	1 cut(s)	261
Tth111I	GACNNNGTC	1 cut(s)	42
VspI	ATTAAT	1 cut(s)	353
XapI	RAATTY	3 cut(s)	136, 297, 315
XceI	RCATGY	2 cut(s)	624, 909
XspI	CTAG	3 cut(s)	72, 344, 647
ZrmI	AGTACT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.