Rh3DG142100

Wall-associated receptor kinase-like 20

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
12137839 .. 12138057
219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG142100.1

Sequence Viewer

Length: 219 bp
ATGGCATCATCAGCTTGTGGGAACTTGTCATTATGTTGTTCATACAAAACTGGTGGATCTTCAAATGCCTACAAAATCAGGGTTAGAAAGGAACGTTGTGTTGCCTATGTGAGTTTTGTGAATTTGGACCCTACGTTGGATGTGAGCAAGTGGCCTCAGCCTGCGGTTGAGATGCAATGGGTGTTGCCGGAAGAGCCAGGATGGGCAAGTTACAAGTAG

Protein Analysis

72

Amino Acids

8.01

Weight (kDa)

8.41

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013898)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 164
AclI AACGTT 1 cut(s) 94
AclWI GGATC 1 cut(s) 64
AcsI RAATTY 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 1 cut(s) 63
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
AlwI GGATC 1 cut(s) 64
AoxI GGCC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 127
AvaII GGWCC 1 cut(s) 127
BbvCI CCTCAGC 1 cut(s) 156
BccI CCATC 1 cut(s) 195
BciT130I CCWGG 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 2 cut(s) 14, 162
Bpu10I CCTNAGC 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 55
Bse3DI GCAATG 1 cut(s) 182
BseBI CCWGG 1 cut(s) 198
BseGI GGATG 2 cut(s) 145, 206
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMI GCAATG 1 cut(s) 182
BseMII CTCAG 1 cut(s) 170
BseNI ACTGG 1 cut(s) 55
BshFI GGCC 1 cut(s) 154
BsiSI CCGG 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 136
BsnI GGCC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 56
BspACI CCGC 1 cut(s) 164
BspANI GGCC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 129
BspPI GGATC 1 cut(s) 64
BspQI GCTCTTC 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 182
BsrI ACTGG 1 cut(s) 55
BssMI GATC 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 198
Bst6I CTCTTC 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 2 cut(s) 145, 206
BstKTI GATC 1 cut(s) 59
BstMBI GATC 1 cut(s) 56
BstMWI GCNNNNNNNGC 2 cut(s) 11, 193
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BsuRI GGCC 1 cut(s) 154
BtsCI GGATG 2 cut(s) 145, 206
Cac8I GCNNGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 127
CspCI CAANNNNNGTGG 2 cut(s) 34, 69
CviJI RGCY 4 cut(s) 14, 154, 160, 196
CviKI_1 RGCY 4 cut(s) 14, 154, 160, 196
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 58
DpnII GATC 1 cut(s) 56
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 196
FaiI YATR 3 cut(s) 34, 43, 108
FokI GGATG 2 cut(s) 152, 213
HaeIII GGCC 1 cut(s) 154
HapII CCGG 1 cut(s) 188
HpaII CCGG 1 cut(s) 188
HpyCH4IV ACGT 2 cut(s) 94, 134
HpyCH4V TGCA 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 193
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 2 cut(s) 94, 134
Kzo9I GATC 1 cut(s) 56
LguI GCTCTTC 1 cut(s) 186
LpnPI CCDG 6 cut(s) 36, 64, 174, 183, 201, 210
LweI GCATC 2 cut(s) 14, 162
MaeII ACGT 2 cut(s) 94, 134
MaeIII GTNAC 1 cut(s) 209
MalI GATC 1 cut(s) 58
MboI GATC 1 cut(s) 56
MboII GAAGA 2 cut(s) 51, 203
MflI RGATCY 1 cut(s) 56
MluCI AATT 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 1 cut(s) 165
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 11, 193
NdeII GATC 1 cut(s) 56
NlaIV GGNNCC 1 cut(s) 129
PciSI GCTCTTC 1 cut(s) 186
Psp1406I AACGTT 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 127
PsuI RGATCY 1 cut(s) 56
SapI GCTCTTC 1 cut(s) 186
Sau3AI GATC 1 cut(s) 56
Sau96I GGNCC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 198
SetI ASST 3 cut(s) 16, 97, 137
SfaNI GCATC 2 cut(s) 14, 162
SgeI CNNG 9 cut(s) 27, 37, 63, 91, 160, 173, 200, 209, 210
SinI GGWCC 1 cut(s) 127
Sse9I AATT 1 cut(s) 121
SsiI CCGC 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 196
TaiI ACGT 2 cut(s) 97, 137
TasI AATT 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 30
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.