Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8386781.1

Orthogroup ID

OG0013898

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 833

Gene Structure 833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8386781.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 553 bp

ggcaaacaaggttcagtgcaatgcaggaacactgtggttccacaccctcaacaactcctatccagtcacatccgttaatccgctaacgcagcggattgtgagccaaccaccaggagtggcaaacaagaacacatgtgtcgctgctgatttccaatctcagggaattttgctggacaacaaccttcccttcaacattagtggcagcaacactgtgataggcatgaactgttcaactgaaatgcttaccacctccttaaactgctcctccaatagcatatgccacgactacgttagggttagaaaggaacgttgtgttgcctatgtgagttttgtgaatttggaccctacgttggatgtgagcaagtggcctcagcctgcggttgagatgcaatgggtgttgccggaagagccaggatgcaagttacaagtagattgtgggggtttggcaaactcggtgtgcttgccggttccgtccagtgccaaagagaggaagtgcttgtgcaagactgggttcaaatgggaccccatcaatggaatatgtcaaagtatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

183

Amino Acids

19.97

Weight (kDa)

7.62

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53840
malus_domestica	MD12G1149600.v1.1
prunus_persica	Prupe.6G261100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0465331 RchiOBHm_Chr3g0465341
rosa_laevigata	RLG00000024646
rosa_multiflora	Rmu_co8329097.1_g000001 Rmu_co8386781.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415120
rosa_rugosa	Rorug03G0076200 Rorug03G0076300
rosa_samantha	Rh3BG141100 Rh3CG142000 Rh3CG142100 Rh3DG142100 Rh3DG142200
rosa_wichuraiana	Rw3G011540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	81, 92, 378
AclI	AACGTT	1 cut(s)	308
AcsI	RAATTY	2 cut(s)	163, 335
AfiI	CCNNNNNNNGG	4 cut(s)	158, 350, 487, 531
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	3 cut(s)	191, 232, 515
AjnI	CCWGG	2 cut(s)	110, 410
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	3 cut(s)	89, 141, 202
ApoI	RAATTY	2 cut(s)	163, 335
AspS9I	GGNCC	2 cut(s)	341, 521
AvaII	GGWCC	2 cut(s)	341, 521
BbvCI	CCTCAGC	1 cut(s)	370
BbvI	GCAGC	3 cut(s)	101, 128, 214
BccI	CCATC	1 cut(s)	534
BciT130I	CCWGG	2 cut(s)	112, 412
BisI	GCNGC	3 cut(s)	90, 142, 203
BlsI	GCNGC	3 cut(s)	91, 143, 204
Bme1390I	CCNGG	2 cut(s)	112, 412
Bme18I	GGWCC	2 cut(s)	341, 521
BmgT120I	GGNCC	2 cut(s)	341, 521
BmiI	GGNNCC	5 cut(s)	39, 343, 469, 522, 523
BmrFI	CCNGG	2 cut(s)	112, 412
BmrI	ACTGGG	1 cut(s)	517
BmsI	GCATC	2 cut(s)	376, 405
BmuI	ACTGGG	1 cut(s)	517
Bpu10I	CCTNAGC	1 cut(s)	370
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 350, 487, 531
Bse118I	RCCGGY	1 cut(s)	464
Bse1I	ACTGG	3 cut(s)	63, 475, 512
Bse3DI	GCAATG	2 cut(s)	26, 396
BseBI	CCWGG	2 cut(s)	112, 412
BseGI	GGATG	3 cut(s)	69, 359, 420
BseLI	CCNNNNNNNGG	4 cut(s)	158, 350, 487, 531
BseMI	GCAATG	2 cut(s)	26, 396
BseMII	CTCAG	2 cut(s)	171, 384
BseNI	ACTGG	3 cut(s)	63, 475, 512
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	3 cut(s)	101, 128, 214
BshFI	GGCC	1 cut(s)	368
BsiSI	CCGG	2 cut(s)	402, 465
BslFI	GGGAC	1 cut(s)	534
BslI	CCNNNNNNNGG	4 cut(s)	158, 350, 487, 531
BsmFI	GGGAC	1 cut(s)	534
BsnI	GGCC	1 cut(s)	368
BspACI	CCGC	3 cut(s)	81, 92, 378
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	2 cut(s)	170, 383
BspLI	GGNNCC	5 cut(s)	39, 343, 469, 522, 523
BspQI	GCTCTTC	1 cut(s)	400
BsrDI	GCAATG	2 cut(s)	26, 396
BsrFI	RCCGGY	1 cut(s)	464
BsrI	ACTGG	3 cut(s)	63, 475, 512
BssAI	RCCGGY	1 cut(s)	464
Bst2UI	CCWGG	2 cut(s)	112, 412
Bst4CI	ACNGT	3 cut(s)	34, 212, 228
Bst6I	CTCTTC	1 cut(s)	400
BstC8I	GCNNGC	2 cut(s)	376, 462
BstDEI	CTNAG	2 cut(s)	157, 370
BstF5I	GGATG	3 cut(s)	69, 359, 420
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 407
BstNI	CCWGG	2 cut(s)	112, 412
BstNSI	RCATGY	1 cut(s)	136
BstSCI	CCNGG	2 cut(s)	110, 410
BstV1I	GCAGC	3 cut(s)	101, 128, 214
BsuRI	GGCC	1 cut(s)	368
BtsCI	GGATG	3 cut(s)	69, 359, 420
BtsIMutI	CAGTG	4 cut(s)	21, 30, 208, 482
Cac8I	GCNNGC	2 cut(s)	376, 462
Cfr10I	RCCGGY	1 cut(s)	464
Cfr13I	GGNCC	2 cut(s)	341, 521
CspCI	CAANNNNNGTGG	2 cut(s)	179, 214
CviAII	CATG	2 cut(s)	133, 221
CviJI	RGCY	4 cut(s)	103, 368, 374, 410
CviKI_1	RGCY	4 cut(s)	103, 368, 374, 410
DdeI	CTNAG	2 cut(s)	157, 370
Eam1104I	CTCTTC	1 cut(s)	400
EarI	CTCTTC	1 cut(s)	400
Eco47I	GGWCC	2 cut(s)	341, 521
EcoO109I	RGGNCCY	1 cut(s)	521
EcoRII	CCWGG	2 cut(s)	110, 410
FaeI	CATG	2 cut(s)	136, 224
FaiI	YATR	7 cut(s)	134, 222, 276, 278, 322, 539, 549
FaqI	GGGAC	1 cut(s)	534
FatI	CATG	2 cut(s)	132, 220
FauNDI	CATATG	1 cut(s)	276
Fnu4HI	GCNGC	3 cut(s)	90, 142, 203
FokI	GGATG	3 cut(s)	56, 366, 427
Fsp4HI	GCNGC	3 cut(s)	90, 142, 203
GluI	GCNGC	3 cut(s)	90, 142, 203
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	2 cut(s)	402, 465
Hin1II	CATG	2 cut(s)	136, 224
HpaII	CCGG	2 cut(s)	402, 465
HpyAV	CCTTC	2 cut(s)	192, 197
HpyCH4III	ACNGT	3 cut(s)	34, 212, 228
HpyCH4IV	ACGT	3 cut(s)	289, 308, 348
HpyCH4V	TGCA	5 cut(s)	19, 24, 389, 418, 502
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 407
HpyF3I	CTNAG	2 cut(s)	157, 370
HpySE526I	ACGT	3 cut(s)	289, 308, 348
Hsp92II	CATG	2 cut(s)	136, 224
KflI	GGGWCCC	1 cut(s)	521
LguI	GCTCTTC	1 cut(s)	400
LmnI	GCTCC	1 cut(s)	267
Lsp1109I	GCAGC	3 cut(s)	101, 128, 214
LweI	GCATC	2 cut(s)	376, 405
MaeII	ACGT	3 cut(s)	289, 308, 348
MaeIII	GTNAC	2 cut(s)	65, 421
MboII	GAAGA	1 cut(s)	417
MluCI	AATT	2 cut(s)	163, 335
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	5 cut(s)	57, 260, 275, 379, 481
MseI	TTAA	2 cut(s)	76, 255
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	2 cut(s)	402, 465
MspR9I	CCNGG	2 cut(s)	112, 412
MvaI	CCWGG	2 cut(s)	112, 412
MwoI	GCNNNNNNNGC	2 cut(s)	89, 407
NdeI	CATATG	1 cut(s)	276
NlaIII	CATG	2 cut(s)	136, 224
NlaIV	GGNNCC	5 cut(s)	39, 343, 469, 522, 523
NmuCI	GTSAC	1 cut(s)	65
NspI	RCATGY	1 cut(s)	136
PciI	ACATGT	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	400
PkrI	GCNGC	3 cut(s)	91, 143, 204
PpuMI	RGGWCCY	1 cut(s)	521
PscI	ACATGT	1 cut(s)	132
Psp1406I	AACGTT	1 cut(s)	308
Psp5II	RGGWCCY	1 cut(s)	521
Psp6I	CCWGG	2 cut(s)	110, 410
PspGI	CCWGG	2 cut(s)	110, 410
PspN4I	GGNNCC	5 cut(s)	39, 343, 469, 522, 523
PspPI	GGNCC	2 cut(s)	341, 521
PspPPI	RGGWCCY	1 cut(s)	521
SapI	GCTCTTC	1 cut(s)	400
SaqAI	TTAA	2 cut(s)	76, 255
SatI	GCNGC	3 cut(s)	90, 142, 203
Sau96I	GGNCC	2 cut(s)	341, 521
ScrFI	CCNGG	2 cut(s)	112, 412
SetI	ASST	6 cut(s)	13, 184, 252, 292, 311, 351
SfaNI	GCATC	2 cut(s)	376, 405
SinI	GGWCC	2 cut(s)	341, 521
Sse9I	AATT	2 cut(s)	163, 335
SsiI	CCGC	3 cut(s)	81, 92, 378
StyD4I	CCNGG	2 cut(s)	110, 410
TaaI	ACNGT	3 cut(s)	34, 212, 228
TaiI	ACGT	3 cut(s)	292, 311, 351
TasI	AATT	2 cut(s)	163, 335
Tru1I	TTAA	2 cut(s)	76, 255
Tru9I	TTAA	2 cut(s)	76, 255
TscAI	CASTG	4 cut(s)	21, 37, 215, 482
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	3 cut(s)	89, 141, 202
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	1 cut(s)	237
TspGWI	ACGGA	2 cut(s)	62, 460
TspRI	CASTG	4 cut(s)	21, 37, 215, 482
VpaK11BI	GGWCC	2 cut(s)	341, 521
XapI	RAATTY	2 cut(s)	163, 335
XceI	RCATGY	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.