Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8329097.1

Orthogroup ID

OG0013898

Physical Location & Seq

Genomic Coordinates Reverse (-)

220 .. 747

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8329097.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ctgcacgattcagtcgagccaaggatttaccaccgtgacataaagtcgagcaacattttactcgatgaaaagctcaacgctaaggttgctgattttggtctgtcgaggttggccgtgaccgaatcaagtcacattacaacatgtgctcagggaaccttggggtacctagaccccgactattacttgaactttcaattgacagacaagagtgatgtctatagcttcggagttgtgttgttagagctgtggactggtaagaaagctattgattttaacagacaagaagacgacgtgaacttggtggtttatgtcgagaacattttaagggaagacagactaaatgatgccattgaacctaagcttaaagaggaggctggcacaatggctctggagactatgaaggcattagggtctctggcagctgcatgcttggatgagaggaggcaaaatcgaccctccatgaaagaagttgctgatgaaattgagtacattattagtatcgttacaaatgaggtttcagcaacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

175

Amino Acids

19.71

Weight (kDa)

4.66

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53840
malus_domestica	MD12G1149600.v1.1
prunus_persica	Prupe.6G261100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0465331 RchiOBHm_Chr3g0465341
rosa_laevigata	RLG00000024646
rosa_multiflora	Rmu_co8329097.1_g000001 Rmu_co8386781.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415120
rosa_rugosa	Rorug03G0076200 Rorug03G0076300
rosa_samantha	Rh3BG141100 Rh3CG142000 Rh3CG142100 Rh3DG142100 Rh3DG142200
rosa_wichuraiana	Rw3G011540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	162
AccB1I	GGYRCC	1 cut(s)	162
AcoI	YGGCCR	1 cut(s)	111
AfaI	GTAC	2 cut(s)	164, 488
AflIII	ACRYGT	1 cut(s)	140
AgsI	TTSAA	3 cut(s)	187, 194, 353
AhdI	GACNNNNNGTC	1 cut(s)	43
AjiI	CACGTC	1 cut(s)	292
AluBI	AGCT	6 cut(s)	73, 222, 244, 263, 361, 422
AluI	AGCT	6 cut(s)	73, 222, 244, 263, 361, 422
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	2 cut(s)	386, 417
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	2 cut(s)	419, 422
Asp718I	GGTACC	1 cut(s)	162
BanI	GGYRCC	1 cut(s)	162
BbsI	GAAGAC	2 cut(s)	291, 336
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	409, 431
BceAI	ACGGC	1 cut(s)	98
BcoDI	GTCTC	2 cut(s)	386, 417
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	217
BisI	GCNGC	2 cut(s)	420, 423
BlsI	GCNGC	2 cut(s)	421, 424
BmeRI	GACNNNNNGTC	1 cut(s)	43
BmgBI	CACGTC	1 cut(s)	292
BmiI	GGNNCC	2 cut(s)	154, 164
BmsI	GCATC	1 cut(s)	334
BpiI	GAAGAC	2 cut(s)	291, 336
BpmI	CTGGAG	1 cut(s)	410
Bpu10I	CCTNAGC	3 cut(s)	81, 147, 357
BsaI	GGTCTC	1 cut(s)	417
BsaJI	CCNNGG	2 cut(s)	20, 156
Bse1I	ACTGG	1 cut(s)	256
BseDI	CCNNGG	2 cut(s)	20, 156
BseGI	GGATG	1 cut(s)	439
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	2 cut(s)	383, 454
BseXI	GCAGC	2 cut(s)	409, 431
BshFI	GGCC	1 cut(s)	113
BshNI	GGYRCC	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	148
BsmAI	GTCTC	2 cut(s)	386, 417
BsnI	GGCC	1 cut(s)	113
Bso31I	GGTCTC	1 cut(s)	417
Bsp1286I	GDGCHC	1 cut(s)	148
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	154, 164
BspT107I	GGYRCC	1 cut(s)	162
BspTNI	GGTCTC	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	2 cut(s)	20, 156
BssT1I	CCWWGG	2 cut(s)	20, 156
Bst4CI	ACNGT	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	376, 427
BstDEI	CTNAG	3 cut(s)	81, 147, 357
BstF5I	GGATG	1 cut(s)	439
BstMAI	GTCTC	2 cut(s)	386, 417
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNSI	RCATGY	2 cut(s)	144, 429
BstSFI	CTRYAG	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	409, 431
BstV2I	GAAGAC	2 cut(s)	291, 336
BsuRI	GGCC	1 cut(s)	113
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	439
Cac8I	GCNNGC	2 cut(s)	376, 427
Csp6I	GTAC	2 cut(s)	163, 487
CviAII	CATG	3 cut(s)	141, 426, 460
CviQI	GTAC	2 cut(s)	163, 487
DdeI	CTNAG	3 cut(s)	81, 147, 357
DriI	GACNNNNNGTC	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	111
Eam1105I	GACNNNNNGTC	1 cut(s)	43
Eco130I	CCWWGG	2 cut(s)	20, 156
Eco31I	GGTCTC	1 cut(s)	417
EcoT14I	CCWWGG	2 cut(s)	20, 156
ErhI	CCWWGG	2 cut(s)	20, 156
FaeI	CATG	3 cut(s)	144, 429, 463
FaiI	YATR	7 cut(s)	41, 142, 219, 309, 398, 427, 461
FatI	CATG	3 cut(s)	140, 425, 459
Fnu4HI	GCNGC	2 cut(s)	420, 423
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	2 cut(s)	420, 423
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	2 cut(s)	420, 423
GsuI	CTGGAG	1 cut(s)	410
HaeIII	GGCC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	144, 429, 463
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	2 cut(s)	8, 122
Hpy166II	GTNNAC	2 cut(s)	249, 295
Hpy188I	TCNGA	1 cut(s)	227
Hpy188III	TCNNGA	2 cut(s)	313, 389
Hpy8I	GTNNAC	2 cut(s)	249, 295
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	2 cut(s)	4, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	3 cut(s)	81, 147, 357
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	3 cut(s)	144, 429, 463
KpnI	GGTACC	1 cut(s)	166
LpnPI	CCDG	5 cut(s)	134, 237, 360, 374, 401
Lsp1109I	GCAGC	2 cut(s)	409, 431
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	4 cut(s)	35, 115, 128, 502
MboII	GAAGA	2 cut(s)	296, 341
MfeI	CAATTG	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	2 cut(s)	194, 480
MnlI	CCTC	7 cut(s)	99, 361, 364, 432, 435, 466, 505
MseI	TTAA	4 cut(s)	273, 323, 363, 526
MspA1I	CMGCKG	1 cut(s)	422
MunI	CAATTG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	86
NlaIII	CATG	3 cut(s)	144, 429, 463
NlaIV	GGNNCC	2 cut(s)	154, 164
NmuCI	GTSAC	3 cut(s)	35, 115, 128
NspI	RCATGY	2 cut(s)	144, 429
PaeI	GCATGC	1 cut(s)	429
PciI	ACATGT	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	8, 122
PkrI	GCNGC	2 cut(s)	421, 424
PscI	ACATGT	1 cut(s)	140
PspN4I	GGNNCC	2 cut(s)	154, 164
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	2 cut(s)	164, 488
RsaNI	GTAC	2 cut(s)	163, 487
SaqAI	TTAA	4 cut(s)	273, 323, 363, 526
SatI	GCNGC	2 cut(s)	420, 423
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	1 cut(s)	217
SphI	GCATGC	1 cut(s)	429
Sse9I	AATT	2 cut(s)	194, 480
SspMI	CTAG	1 cut(s)	167
StyI	CCWWGG	2 cut(s)	20, 156
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	6 cut(s)	15, 47, 63, 104, 312, 451
TaqII	GACCGA	1 cut(s)	134
TasI	AATT	2 cut(s)	194, 480
TatI	WGTACW	1 cut(s)	486
TfiI	GAWTC	2 cut(s)	8, 122
Tru1I	TTAA	4 cut(s)	273, 323, 363, 526
Tru9I	TTAA	4 cut(s)	273, 323, 363, 526
TseFI	GTSAC	3 cut(s)	35, 115, 128
TseI	GCWGC	2 cut(s)	419, 422
Tsp45I	GTSAC	3 cut(s)	35, 115, 128
TspDTI	ATGAA	4 cut(s)	81, 413, 476, 492
XceI	RCATGY	2 cut(s)	144, 429
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.