Rorug03G0076200

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001859
Physical Location & Seq
Reverse (-)
5947520 .. 5955756
8237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0076200.1

Sequence Viewer

Length: 3012 bp
ATGGGTATCATATCCAGGAAGATTTTCCCAGCATGTGGGAACATGTGTGTATGCTGCCCTGCTATGAGGTCAAGATCTAGACAACCTGTTAAGCGTTACAAAAAACTGCTTGCAGAAATCTTTCCCAAGTCTCCTGATGGCCCTCCCAATGAAAGGAAAATTGTTAAGTTATGCGAATATGCCGCAAAGAATCCTTTTAGAATCCCTAAGATTGCCAAACATCTTGAAGATAGGTGTTACAAAGAGCTGCGACTTGAGCATGTCAAATTCATCAATATTGTTGCAGAGGCCTACAACAAGTTACTTTGCCTCTGTAAGGACCAGATGGCTTATTTCGCTGTCAGTGTGCTAAACGTAGTCACTGAGCTTCTGGACAACTCTAAGCAAGACGCTCTCCGTATAATTGGATGCCAAACTCTGACGAGGTTCATCTACACTCAGGCGAATGGAACTTATACACACAACATTGAGAGTTTGGTTCACAAAGTATGTAAGCTGGCACATGAGAGTGGTGAAGACCATCAAAAGCGCTGCTTGAGAGCATCAAGTTTGCAGTGCCTTTCAGCCATGGTCCAATTCATGACTGAATTTTCATATATTTTTGTTGATTTTGATGAGATTGTACATGCCACTTTGGATAACTATGAGCCTGATGCAAATGATGATGATGATGATGATGAGGGAGCGGAGTCGCATCATAATTGGGTGGATGAAGTAGTTCGAAGTGAAGGTAGAGTTGGTGCAATTGCCGGTGGGTATTCTAGCCCTAGTTGTAAGGTCATCAGGCCACGGCCAGAAAAAAAGGATCCTTCTCTTCTCACAAGAGAAGAGACAGAGACGCCAAACATTTGGGCTCAAATTTGTATCCAGAGAATGATTGAATTAGCCAAGGAGAGCACAACAATGCGCCGGGTATTGGATCCAATGTTTGTCTACTTTGACTCCAGGCACCATTGGGTTCCTCGACAAGGGTTGGCTTTGTCAGTTTTGTCTGATATGTCATACTTTTTGGAGACTTCAGGAAATCAGCAGATGATTTTAGCCTATGCAATCCGTCATCTTGACCACAAAAATGTTTCACATGATCCACAACTCAAATCTCAGATCATTCAAGTTGCTAGTGCTTTGGCAAGCCAAATTCGATCCGGAACCGTGCTAGAAGAAATTGGTTTTGTCTCTGACCTATGCAGGCATTTGAGGAAGAGTCTTCAAGCTACTGTTGAATCAGTTGGAGAGCAAGAGTCTAACATTAATACCATGCTACAGAGTTCCATTGAAGATTGCTTATTAGAAATTGCTAGAGGGATTGGAAATATAAGACCATTGTTTGACATGATGTCTATATCTCTGGAGAAGCTTCCATCTGGAACTGTTGCCAGGGCGACCATGGGATCATTGATGATTGTTGCTCACATGATCTCATTAGCATTGATCTCTTCACATTCACAGCAGGTGTTTCCTGAATCCCTTCTTGTCCAGCTTTTGAAAGTGATGATGCATCCAGATGTTGAGGTGCGTGTTGGAGCACACCAGATACTTTCTGTTCTTCTCATTCCATGTTCTAATCGGCCCCGACATGAAGTTGCTCCTCTACAATCTGGTTATGTATACCAGTCAAGAAAAGGGAATTCAAATACAGCATCTATTGCTTCAATTACGGCTAGACTTGAAAAGCTTAGGAGGGAAAAAGATGGCCCCAAAGCAGAAAATCAGGAGACTGATGCTCGTGGTGATTTTAAAGATAGAGATACTGCAGAAGAAGATTGCAAGCAAGGGCATACCCACAAGAGTTCCCCGAACTTCTATAAAATTAGCTCTATTATTGACAAGACTGCTGGGTCAAGCCTAACAGAGCCTGAACCGTACGTAATGAAGTTTAGTGAGGATCAAATAGCAGACTTGCTGTCTGCTTTTTGGATACAAGCCAATCTCCCAGATAATTTGCCTTCAAATATTGAAGCTATAGCTCATTCTTTCATTTTAATGATAGTTTCTTCTCATTTGAAGAATCCAAATGGCAACCTTATGGTTCGTTCCTTTCAACTTCTGCTATCTCTGAGGAATATCTCCCTTGATCCTAACAATGGGATGTTGCCTCCAGCTTGCCAGAGATCTATCCTTGTGCTATCGATTGGCCTGTTGATGTTTTCTGCTCAGATCTATCACATTCCTAATCTAAATGATCTGCTCAAATCATTAATACCATCTGATGTTGATCCATATTTGGGAATCAGTGATGACCTTCAAGTTTTTCTAAGGCCTGAGGCAGACATCACAAAATATGGATCTGTTATCGATAACCAGCTAGCTTCATCATTACTATTTGATTTGCGGAAAAAATTATATGAATCTGACGATGTCATAAGGGAAATCTTAGTTCAATTTCTAACAGACATTACTGAGATGGAGGCAGAGGCTGTGGCTAACCAACTTTTGGAGTCATTCGTACCTGATGATGCGTTCATGTTTGGTCCACAATCAATGCTTGACTTTGATGAAAATCAAATGCCAGGCCATTCGAAAGAATCACTTTCCTTTGATGGGGAATTTCTGACAAATTCATCAGTTGAGGATGATGCAACAAGTGAAGCATCAGTTGCTGATTTCTCCCGGTTCATTCCTAGAGTCCCTTCATCCTCTTCTGTCTCCCATGTTATCAGTGTTGGACAGCTTCTGGAATCAGCACTTGAGGTTGCTGGTCAAGTAGCAGGAACATCTGTATCTACATCACCCCTCCCGTACAACACCATGGCAAGACACTGTGAAGCCCTGGGCACAGGCACAAGGAAGAAGCTTTCTAATTGGTTGGCCCATGAACATCATCAAAGCAACACTGTCCGTGACATTTTGTCTCCACCATTTCTTGCGGGTGGATGCACAGCACTCCAGAAGTTAATTAATGAACCTGGGGTTACCCAGGGAGCTGCATCGGCACAGGACTCGTGGTTAGCTGCTATCAGGTTGCCTCCTGCTAGTCCGTTTGACAACTTCCTCAAGGCAGCTGGTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

1003

Amino Acids

111.58

Weight (kDa)

5.7

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EFR3_ARM PF21052 65 - 159 8.1e-21 EFR3, armadillo repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1441
AasI GACNNNNNNGTC 1 cut(s) 1837
Acc36I ACCTGC 1 cut(s) 1441
AccB1I GGYRCC 1 cut(s) 948
AccB7I CCANNNNNTGG 2 cut(s) 35, 2434
AccBSI CCGCTC 1 cut(s) 686
AccI GTMKAC 2 cut(s) 933, 1608
AccIII TCCGGA 1 cut(s) 1145
AciI CCGC 4 cut(s) 183, 686, 2332, 2867
AcoI YGGCCR 1 cut(s) 791
AcsI RAATTY 7 cut(s) 266, 587, 858, 1137, 1627, 2546, 2557
AcuI CTGAAG 1 cut(s) 1002
AcyI GRCGYC 1 cut(s) 839
AfaI GTAC 4 cut(s) 624, 1865, 2448, 2741
AfeI AGCGCT 1 cut(s) 530
AfiI CCNNNNNNNGG 9 cut(s) 35, 153, 316, 916, 968, 2084, 2225, 2434, 2541
AflIII ACRYGT 1 cut(s) 42
AhdI GACNNNNNGTC 3 cut(s) 1336, 1903, 2848
AjnI CCWGG 7 cut(s) 14, 944, 1376, 2509, 2769, 2905, 2916
AjuI GAANNNNNNNTTGG 2 cut(s) 720, 752
Alw21I GWGCWC 2 cut(s) 899, 1528
Alw26I GTCTC 8 cut(s) 135, 824, 830, 1007, 1180, 1709, 2650, 2856
AlwNI CAGNNNCTG 4 cut(s) 1856, 2417, 2600, 2674
Aor13HI TCCGGA 1 cut(s) 1145
Aor51HI AGCGCT 1 cut(s) 530
ApeKI GCWGC 6 cut(s) 54, 247, 531, 2924, 2951, 2999
ApoI RAATTY 7 cut(s) 266, 587, 858, 1137, 1627, 2546, 2557
AseI ATTAAT 3 cut(s) 1251, 2198, 2898
Asp700I GAANNNNTTC 4 cut(s) 23, 120, 717, 1467
AspLEI GCGC 2 cut(s) 531, 909
AspS9I GGNCC 7 cut(s) 140, 319, 571, 1569, 1694, 2471, 2809
AsuC2I CCSGG 2 cut(s) 911, 2611
AsuHPI GGTGA 3 cut(s) 524, 1742, 2721
AsuII TTCGAA 2 cut(s) 721, 2519
AsuNHI GCTAGC 1 cut(s) 2305
AvaII GGWCC 3 cut(s) 319, 571, 2471
AxyI CCTNAGG 1 cut(s) 2262
BaeGI GKGCMC 1 cut(s) 2777
BaeI ACNNNNGTAYC 2 cut(s) 2703, 2736
BamHI GGATCC 2 cut(s) 805, 919
BanI GGYRCC 1 cut(s) 948
BanII GRGCYC 1 cut(s) 856
BauI CACGAG 2 cut(s) 1725, 2941
BbsI GAAGAC 2 cut(s) 522, 1199
Bbv12I GWGCWC 2 cut(s) 899, 1528
BbvI GCAGC 5 cut(s) 41, 234, 518, 2911, 2938
BccI CCATC 8 cut(s) 131, 319, 528, 1369, 1685, 2212, 2398, 2534
BceAI ACGGC 2 cut(s) 806, 1674
BcgI CGANNNNNNTGC 2 cut(s) 2922, 2956
BciT130I CCWGG 7 cut(s) 16, 946, 1378, 2511, 2771, 2907, 2918
BciVI GTATCC 2 cut(s) 875, 1911
BcnI CCSGG 2 cut(s) 911, 2611
BcoDI GTCTC 8 cut(s) 135, 824, 830, 1007, 1180, 1709, 2650, 2856
BfmI CTRYAG 3 cut(s) 1262, 1752, 1962
BfoI RGCGCY 1 cut(s) 532
BfuAI ACCTGC 1 cut(s) 1441
BfuI GTATCC 2 cut(s) 875, 1911
BglII AGATCT 3 cut(s) 74, 2111, 2157
BisI GCNGC 7 cut(s) 55, 183, 248, 532, 2925, 2952, 3000
BlsI GCNGC 7 cut(s) 56, 184, 249, 533, 2926, 2953, 3001
Bme1390I CCNGG 9 cut(s) 16, 911, 946, 1378, 2511, 2611, 2771, 2907, 2918
Bme18I GGWCC 3 cut(s) 319, 571, 2471
BmeRI GACNNNNNGTC 3 cut(s) 1336, 1903, 2848
BmgT120I GGNCC 7 cut(s) 140, 319, 571, 1569, 1694, 2471, 2809
BmiI GGNNCC 7 cut(s) 807, 921, 950, 960, 1150, 1571, 1696
BmrFI CCNGG 9 cut(s) 16, 911, 946, 1378, 2511, 2611, 2771, 2907, 2918
BmtI GCTAGC 1 cut(s) 2309
BpiI GAAGAC 2 cut(s) 522, 1199
BpmI CTGGAG 4 cut(s) 928, 1370, 2082, 2870
Bpu10I CCTNAGC 1 cut(s) 1676
Bpu14I TTCGAA 2 cut(s) 721, 2519
BpuEI CTTGAG 4 cut(s) 275, 556, 2708, 2978
BpuMI CCSGG 2 cut(s) 911, 2611
Bsa29I ATCGAT 2 cut(s) 2129, 2295
BsaAI YACGTR 1 cut(s) 1867
BsaBI GATNNNNATC 2 cut(s) 2214, 2499
BsaHI GRCGYC 1 cut(s) 839
BsaWI WCCGGW 1 cut(s) 1145
BsaXI ACNNNNNCTCC 2 cut(s) 926, 956
Bsc4I CCNNNNNNNGG 9 cut(s) 35, 153, 316, 916, 968, 2084, 2225, 2434, 2541
Bse118I RCCGGY 1 cut(s) 749
Bse1I ACTGG 1 cut(s) 1612
Bse21I CCTNAGG 1 cut(s) 2262
Bse8I GATNNNNATC 2 cut(s) 2214, 2499
BseAI TCCGGA 1 cut(s) 1145
BseBI CCWGG 7 cut(s) 16, 946, 1378, 2511, 2771, 2907, 2918
BseCI ATCGAT 2 cut(s) 2129, 2295
BseGI GGATG 7 cut(s) 413, 715, 1498, 2094, 2578, 2633, 2879
BseJI GATNNNNATC 2 cut(s) 2214, 2499
BseLI CCNNNNNNNGG 9 cut(s) 35, 153, 316, 916, 968, 2084, 2225, 2434, 2541
BseMII CTCAG 7 cut(s) 354, 452, 1115, 2048, 2168, 2253, 2391
BseNI ACTGG 1 cut(s) 1612
BseRI GAGGAG 1 cut(s) 1578
BseSI GKGCMC 1 cut(s) 2777
BseXI GCAGC 5 cut(s) 41, 234, 518, 2911, 2938
BseYI CCCAGC 2 cut(s) 28, 1835
BshNI GGYRCC 1 cut(s) 948
BshVI ATCGAT 2 cut(s) 2129, 2295
BsiHKAI GWGCWC 2 cut(s) 899, 1528
BsiSI CCGG 4 cut(s) 750, 910, 1146, 2611
BsiWI CGTACG 1 cut(s) 1863
BslFI GGGAC 1 cut(s) 2612
BslI CCNNNNNNNGG 9 cut(s) 35, 153, 316, 916, 968, 2084, 2225, 2434, 2541
BsmAI GTCTC 8 cut(s) 135, 824, 830, 1007, 1180, 1709, 2650, 2856
BsmBI CGTCTC 1 cut(s) 830
BsmFI GGGAC 1 cut(s) 2612
Bsp119I TTCGAA 2 cut(s) 721, 2519
Bsp1286I GDGCHC 4 cut(s) 856, 899, 1528, 2777
Bsp13I TCCGGA 1 cut(s) 1145
Bsp1407I TGTACA 1 cut(s) 622
Bsp19I CCATGG 3 cut(s) 567, 1386, 2748
BspACI CCGC 4 cut(s) 183, 686, 2332, 2867
BspCNI CTCAG 7 cut(s) 355, 451, 1114, 2049, 2167, 2254, 2392
BspDI ATCGAT 2 cut(s) 2129, 2295
BspEI TCCGGA 1 cut(s) 1145
BspHI TCATGA 1 cut(s) 579
BspLI GGNNCC 7 cut(s) 807, 921, 950, 960, 1150, 1571, 1696
BspMAI CTGCAG 1 cut(s) 1756
BspMI ACCTGC 1 cut(s) 1441
BspOI GCTAGC 1 cut(s) 2309
BspT104I TTCGAA 2 cut(s) 721, 2519
BspT107I GGYRCC 1 cut(s) 948
BsrBI CCGCTC 1 cut(s) 686
BsrFI RCCGGY 1 cut(s) 749
BsrGI TGTACA 1 cut(s) 622
BsrI ACTGG 1 cut(s) 1612
BssAI RCCGGY 1 cut(s) 749
BssNAI GTATAC 1 cut(s) 1609
BssNI GRCGYC 1 cut(s) 839
BssSI CACGAG 2 cut(s) 1725, 2941
BssT1I CCWWGG 4 cut(s) 567, 888, 1386, 2748
Bst1107I GTATAC 1 cut(s) 1609
Bst2BI CACGAG 2 cut(s) 1725, 2941
Bst2UI CCWGG 7 cut(s) 16, 946, 1378, 2511, 2771, 2907, 2918
Bst4CI ACNGT 6 cut(s) 1153, 1219, 1372, 1863, 2762, 2836
Bst6I CTCTTC 5 cut(s) 819, 822, 1196, 1441, 2644
BstACI GRCGYC 1 cut(s) 839
BstAPI GCANNNNNTGC 2 cut(s) 1646, 2597
BstAUI TGTACA 1 cut(s) 622
BstBAI YACGTR 1 cut(s) 1867
BstBI TTCGAA 2 cut(s) 721, 2519
BstC8I GCNNGC 7 cut(s) 111, 498, 1132, 1190, 1769, 2104, 2307
BstDSI CCRYGG 4 cut(s) 567, 788, 1386, 2748
BstEII GGTNACC 1 cut(s) 2911
BstENI CCTNNNNNAGG 2 cut(s) 314, 966
BstF5I GGATG 7 cut(s) 413, 715, 1498, 2094, 2578, 2633, 2879
BstH2I RGCGCY 1 cut(s) 532
BstHHI GCGC 2 cut(s) 531, 909
BstMAI GTCTC 8 cut(s) 135, 824, 830, 1007, 1180, 1709, 2650, 2856
BstMWI GCNNNNNNNGC 5 cut(s) 256, 335, 1646, 2597, 2930
BstNI CCWGG 7 cut(s) 16, 946, 1378, 2511, 2771, 2907, 2918
BstNSI RCATGY 4 cut(s) 36, 46, 263, 629
BstPI GGTNACC 1 cut(s) 2911
BstSCI CCNGG 9 cut(s) 14, 909, 944, 1376, 2509, 2609, 2769, 2905, 2916
BstSFI CTRYAG 3 cut(s) 1262, 1752, 1962
BstSLI GKGCMC 1 cut(s) 2777
BstSNI TACGTA 1 cut(s) 1867
BstV1I GCAGC 5 cut(s) 41, 234, 518, 2911, 2938
BstV2I GAAGAC 2 cut(s) 522, 1199
BstX2I RGATCY 6 cut(s) 74, 805, 919, 2111, 2157, 2285
BstXI CCANNNNNNTGG 1 cut(s) 849
BstYI RGATCY 6 cut(s) 74, 805, 919, 2111, 2157, 2285
BstZ17I GTATAC 1 cut(s) 1609
Bsu15I ATCGAT 2 cut(s) 2129, 2295
Bsu36I CCTNAGG 1 cut(s) 2262
BsuI GTATCC 2 cut(s) 875, 1911
BsuTUI ATCGAT 2 cut(s) 2129, 2295
BtgI CCRYGG 4 cut(s) 567, 788, 1386, 2748
BtsCI GGATG 7 cut(s) 413, 715, 1498, 2094, 2578, 2633, 2879
BtsI GCAGTG 1 cut(s) 560
BtsIMutI CAGTG 7 cut(s) 349, 360, 560, 2239, 2665, 2758, 2832
BveI ACCTGC 1 cut(s) 1441
Cac8I GCNNGC 7 cut(s) 111, 498, 1132, 1190, 1769, 2104, 2307
CaiI CAGNNNCTG 4 cut(s) 1856, 2417, 2600, 2674
CciI TCATGA 1 cut(s) 579
CfoI GCGC 2 cut(s) 531, 909
Cfr10I RCCGGY 1 cut(s) 749
Cfr13I GGNCC 7 cut(s) 140, 319, 571, 1569, 1694, 2471, 2809
ClaI ATCGAT 2 cut(s) 2129, 2295
CseI GACGC 2 cut(s) 398, 847
Csp6I GTAC 4 cut(s) 623, 1864, 2447, 2740
CviQI GTAC 4 cut(s) 623, 1864, 2447, 2740
DraI TTTAAA 1 cut(s) 1738
DrdI GACNNNNNNGTC 1 cut(s) 1837
DriI GACNNNNNGTC 3 cut(s) 1336, 1903, 2848
DseDI GACNNNNNNGTC 1 cut(s) 1837
EaeI YGGCCR 1 cut(s) 791
Eam1104I CTCTTC 5 cut(s) 819, 822, 1196, 1441, 2644
Eam1105I GACNNNNNGTC 3 cut(s) 1336, 1903, 2848
EarI CTCTTC 5 cut(s) 819, 822, 1196, 1441, 2644
Eco105I TACGTA 1 cut(s) 1867
Eco130I CCWWGG 4 cut(s) 567, 888, 1386, 2748
Eco147I AGGCCT 2 cut(s) 290, 2260
Eco24I GRGCYC 1 cut(s) 856
Eco47I GGWCC 3 cut(s) 319, 571, 2471
Eco47III AGCGCT 1 cut(s) 530
Eco57I CTGAAG 1 cut(s) 1002
Eco81I CCTNAGG 1 cut(s) 2262
Eco91I GGTNACC 1 cut(s) 2911
EcoNI CCTNNNNNAGG 2 cut(s) 314, 966
EcoO65I GGTNACC 1 cut(s) 2911
EcoRI GAATTC 1 cut(s) 1627
EcoRII CCWGG 7 cut(s) 14, 944, 1376, 2509, 2769, 2905, 2916
EcoT14I CCWWGG 4 cut(s) 567, 888, 1386, 2748
EcoT22I ATGCAT 1 cut(s) 1500
EcoT38I GRGCYC 1 cut(s) 856
ErhI CCWWGG 4 cut(s) 567, 888, 1386, 2748
Esp3I CGTCTC 1 cut(s) 830
FalI AAGNNNNNCTT 4 cut(s) 518, 550, 2514, 2546
FaqI GGGAC 1 cut(s) 2612
FauI CCCGC 1 cut(s) 2860
FblI GTMKAC 2 cut(s) 933, 1608
Fnu4HI GCNGC 7 cut(s) 55, 183, 248, 532, 2925, 2952, 3000
FokI GGATG 7 cut(s) 420, 722, 1485, 2101, 2585, 2620, 2886
FriOI GRGCYC 1 cut(s) 856
Fsp4HI GCNGC 7 cut(s) 55, 183, 248, 532, 2925, 2952, 3000
GlaI GCGC 2 cut(s) 530, 908
GluI GCNGC 7 cut(s) 55, 183, 248, 532, 2925, 2952, 3000
GsaI CCCAGC 2 cut(s) 32, 1839
GsuI CTGGAG 4 cut(s) 928, 1370, 2082, 2870
HaeII RGCGCY 1 cut(s) 532
HapII CCGG 4 cut(s) 750, 910, 1146, 2611
HgaI GACGC 2 cut(s) 398, 847
HhaI GCGC 2 cut(s) 531, 909
Hin1I GRCGYC 1 cut(s) 839
Hin6I GCGC 2 cut(s) 529, 907
HinP1I GCGC 2 cut(s) 529, 907
HindIII AAGCTT 3 cut(s) 1355, 1673, 2792
HpaII CCGG 4 cut(s) 750, 910, 1146, 2611
HphI GGTGA 3 cut(s) 524, 1742, 2721
Hpy166II GTNNAC 4 cut(s) 481, 934, 1609, 2474
Hpy188I TCNGA 9 cut(s) 420, 994, 1104, 1180, 2058, 2157, 2209, 2353, 2553
Hpy8I GTNNAC 4 cut(s) 481, 934, 1609, 2474
HpyAV CCTTC 6 cut(s) 722, 819, 1478, 1956, 2252, 2640
HpyCH4III ACNGT 6 cut(s) 1153, 1219, 1372, 1863, 2762, 2836
HpyCH4IV ACGT 2 cut(s) 354, 1866
HpyF10VI GCNNNNNNNGC 5 cut(s) 256, 335, 1646, 2597, 2930
HpySE526I ACGT 2 cut(s) 354, 1866
Hsp92I GRCGYC 1 cut(s) 839
HspAI GCGC 2 cut(s) 529, 907
Kpn2I TCCGGA 1 cut(s) 1145
LmnI GCTCC 4 cut(s) 683, 1523, 1591, 2921
Lsp1109I GCAGC 5 cut(s) 41, 234, 518, 2911, 2938
MaeII ACGT 2 cut(s) 354, 1866
MaeIII GTNAC 6 cut(s) 95, 236, 300, 358, 2840, 2911
MbiI CCGCTC 1 cut(s) 686
MfeI CAATTG 1 cut(s) 744
MflI RGATCY 6 cut(s) 74, 805, 919, 2111, 2157, 2285
MhlI GDGCHC 4 cut(s) 856, 899, 1528, 2777
MlyI GAGTC 7 cut(s) 698, 935, 1213, 1250, 2447, 2634, 2933
MmeI TCCRAC 3 cut(s) 1210, 1501, 2644
Mph1103I ATGCAT 1 cut(s) 1500
MroI TCCGGA 1 cut(s) 1145
MroXI GAANNNNTTC 4 cut(s) 23, 120, 717, 1467
MseI TTAA 8 cut(s) 90, 165, 1251, 1737, 1982, 2198, 2894, 2898
MslI CAYNNNNRTG 5 cut(s) 507, 902, 1071, 1503, 1982
MspA1I CMGCKG 1 cut(s) 3002
MspI CCGG 4 cut(s) 750, 910, 1146, 2611
MspR9I CCNGG 9 cut(s) 16, 911, 946, 1378, 2511, 2611, 2771, 2907, 2918
MunI CAATTG 1 cut(s) 744
MvaI CCWGG 7 cut(s) 16, 946, 1378, 2511, 2771, 2907, 2918
MwoI GCNNNNNNNGC 5 cut(s) 256, 335, 1646, 2597, 2930
NciI CCSGG 2 cut(s) 911, 2611
NcoI CCATGG 3 cut(s) 567, 1386, 2748
NheI GCTAGC 1 cut(s) 2305
NlaIV GGNNCC 7 cut(s) 807, 921, 950, 960, 1150, 1571, 1696
NmuCI GTSAC 2 cut(s) 358, 2840
NsiI ATGCAT 1 cut(s) 1500
NspI RCATGY 4 cut(s) 36, 46, 263, 629
NspV TTCGAA 2 cut(s) 721, 2519
PacI TTAATTAA 1 cut(s) 2898
PagI TCATGA 1 cut(s) 579
PaqCI CACCTGC 1 cut(s) 1441
PasI CCCWGGG 2 cut(s) 2770, 2917
PceI AGGCCT 2 cut(s) 290, 2260
PciI ACATGT 1 cut(s) 42
PdmI GAANNNNTTC 4 cut(s) 23, 120, 717, 1467
PfeI GAWTC 9 cut(s) 190, 201, 1223, 1463, 2008, 2229, 2348, 2525, 2678
Pfl23II CGTACG 1 cut(s) 1863
PflFI GACNNNGTC 1 cut(s) 2357
PflMI CCANNNNNTGG 2 cut(s) 35, 2434
PfoI TCCNGGA 1 cut(s) 14
PkrI GCNGC 7 cut(s) 56, 184, 249, 533, 2926, 2953, 3001
PleI GAGTC 7 cut(s) 697, 935, 1212, 1249, 2446, 2633, 2933
PpsI GAGTC 7 cut(s) 697, 935, 1212, 1249, 2446, 2633, 2933
Ppu21I YACGTR 1 cut(s) 1867
PscI ACATGT 1 cut(s) 42
PshBI ATTAAT 3 cut(s) 1251, 2198, 2898
Psp6I CCWGG 7 cut(s) 14, 944, 1376, 2509, 2769, 2905, 2916
PspEI GGTNACC 1 cut(s) 2911
PspFI CCCAGC 2 cut(s) 28, 1835
PspGI CCWGG 7 cut(s) 14, 944, 1376, 2509, 2769, 2905, 2916
PspLI CGTACG 1 cut(s) 1863
PspN4I GGNNCC 7 cut(s) 807, 921, 950, 960, 1150, 1571, 1696
PspPI GGNCC 7 cut(s) 140, 319, 571, 1569, 1694, 2471, 2809
PstI CTGCAG 1 cut(s) 1756
PstNI CAGNNNCTG 4 cut(s) 1856, 2417, 2600, 2674
PsuI RGATCY 6 cut(s) 74, 805, 919, 2111, 2157, 2285
PsyI GACNNNGTC 1 cut(s) 2357
PvuII CAGCTG 1 cut(s) 3002
RsaI GTAC 4 cut(s) 624, 1865, 2448, 2741
RsaNI GTAC 4 cut(s) 623, 1864, 2447, 2740
RseI CAYNNNNRTG 5 cut(s) 507, 902, 1071, 1503, 1982
SaqAI TTAA 8 cut(s) 90, 165, 1251, 1737, 1982, 2198, 2894, 2898
SatI GCNGC 7 cut(s) 55, 183, 248, 532, 2925, 2952, 3000
Sau96I GGNCC 7 cut(s) 140, 319, 571, 1569, 1694, 2471, 2809
SchI GAGTC 7 cut(s) 698, 935, 1213, 1250, 2447, 2634, 2933
ScrFI CCNGG 9 cut(s) 16, 911, 946, 1378, 2511, 2611, 2771, 2907, 2918
SduI GDGCHC 4 cut(s) 856, 899, 1528, 2777
SfcI CTRYAG 3 cut(s) 1262, 1752, 1962
SfuI TTCGAA 2 cut(s) 721, 2519
SinI GGWCC 3 cut(s) 319, 571, 2471
SmiMI CAYNNNNRTG 5 cut(s) 507, 902, 1071, 1503, 1982
SmlI CTYRAG 4 cut(s) 254, 535, 2687, 2993
SmoI CTYRAG 4 cut(s) 254, 535, 2687, 2993
SnaBI TACGTA 1 cut(s) 1867
SseBI AGGCCT 2 cut(s) 290, 2260
SsiI CCGC 4 cut(s) 183, 686, 2332, 2867
SspI AATATT 2 cut(s) 277, 1954
StuI AGGCCT 2 cut(s) 290, 2260
StyD4I CCNGG 9 cut(s) 14, 909, 944, 1376, 2509, 2609, 2769, 2905, 2916
StyI CCWWGG 4 cut(s) 567, 888, 1386, 2748
TaaI ACNGT 6 cut(s) 1153, 1219, 1372, 1863, 2762, 2836
TaiI ACGT 2 cut(s) 357, 1869
TaqI TCGA 6 cut(s) 721, 964, 1141, 2129, 2295, 2519
TatI WGTACW 1 cut(s) 622
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 9 cut(s) 190, 201, 1223, 1463, 2008, 2229, 2348, 2525, 2678
Tru1I TTAA 8 cut(s) 90, 165, 1251, 1737, 1982, 2198, 2894, 2898
Tru9I TTAA 8 cut(s) 90, 165, 1251, 1737, 1982, 2198, 2894, 2898
TscAI CASTG 7 cut(s) 349, 367, 560, 2239, 2665, 2765, 2839
TseFI GTSAC 2 cut(s) 358, 2840
TseI GCWGC 6 cut(s) 54, 247, 531, 2924, 2951, 2999
Tsp45I GTSAC 2 cut(s) 358, 2840
TspGWI ACGGA 4 cut(s) 386, 1043, 2828, 2967
TspRI CASTG 7 cut(s) 349, 367, 560, 2239, 2665, 2765, 2839
Tth111I GACNNNGTC 1 cut(s) 2357
Van91I CCANNNNNTGG 2 cut(s) 35, 2434
VpaK11BI GGWCC 3 cut(s) 319, 571, 2471
VspI ATTAAT 3 cut(s) 1251, 2198, 2898
XagI CCTNNNNNAGG 2 cut(s) 314, 966
XapI RAATTY 7 cut(s) 266, 587, 858, 1137, 1627, 2546, 2557
XbaI TCTAGA 1 cut(s) 77
XceI RCATGY 4 cut(s) 36, 46, 263, 629
XcmI CCANNNNNNNNNTGG 1 cut(s) 1384
XmiI GTMKAC 2 cut(s) 933, 1608
XmnI GAANNNNTTC 4 cut(s) 23, 120, 717, 1467
Zsp2I ATGCAT 1 cut(s) 1500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.