Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001859

Physical Location & Seq

Genomic Coordinates Forward (+)

16946887 .. 16949330

Gene Structure 2444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g14390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCTGACGACATTCGTTTCTTCGAGCTGAACACCGGCGCTAAGATCCCGTCGATAGGGTTGGGGACCTGGCAGTCCAGCCCTGGCGTCGTCGGCGACGCGGTTCACGCCGCCGTCAAGGCGGGGTATCGGCAAATTGATTGTGCTCAAATCTACGGCAATGAGAAGGAGATTGGTTTGGTTCTGAAGAAACTGTTTGAAGAGGGCGTGGTGAAGCGCGAGGATTTGTGGATTACCTCCAAACTCTGGAATACTGATCATGCTCCAGAAGATGTACCAGAGGCATTGGACAGGACTCTGAGAGACTTGCAACTGGATTATGTTGACTTGTACCTTATACACTGGCCAATCCGGATGAAGAAGGGGTCATCAGCAAGTTTTAACCTTGAAAACTTTATTGACCCTGATATCCCTGCGACTTGGAGAGCAATGGAAACACTCTATGATTCGGGAAAGGCTCGAGCTATTGGTGTAAGCAATTTCTCCACAAAAAAGCTGTCAGATTTGCTGGATATTGCACGTGTTCCTCCTGCTGTCGACCAAGTGGAGTGCCATCCTTCTTGGCAGCAGGACAAGCTACGTTCTTTCTGTAAATCCAAGGGAGTTCACCTTTCTGGATATTCACCACTGGGCTCTCCTGGAACAACATGGATCAAAGGTGAAGTCCTTAATAATCCGATTCTTGTGACAGTCGCTGAGAAATTAGGCAAAACTCCGGCACAAGTTGCTCTTCGTTGGGGACTGCAAAAGGGTCATAGTGTTCTTCCCAAGAGTACCAATGAAGCGAGGATCAAGGAGAACCTTGATGTGTTTGGTTGGTCTATCCCAGATGACTTGTTCGCCAAGTTTTCTGAAATTGAGCAGGCAAGACTGATCAGATGGCTCTCACCTGTTCATCATACTTCTGGTCCGTACAGGAGTTTAGAGGAATTCTGGGACGGAGAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

317

Amino Acids

35.42

Weight (kDa)

5.94

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37770
fragaria_vesca	FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020
malus_domestica	MD12G1150200.v1.1
prunus_persica	Prupe.6G094300_v2.0.a1 Prupe.6G261900_v2.0.a1
pyrus_communis	pycom04g12320 pycom12g14390 pycom12g14400
rosa_chinensis	RchiOBHm_Chr3g0465151 RchiOBHm_Chr3g0465231 RchiOBHm_Chr3g0465271 RchiOBHm_Chr3g0465311
rosa_laevigata	RLG00000024648 RLG00000024651 RLG00000024653
rosa_multiflora	Rmu_co8067008.1_g000001 Rmu_co8210356.1_g000001 Rmu_sc0003386.1_g000008 Rmu_sc0003386.1_g000010 Rmu_sc0003492.1_g000019 Rmu_sc0018026.1_g000002 Rmu_sc0021566.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415190 Rroxscaffold_6G00415200
rosa_rugosa	Rorug03G0075800 Rorug03G0075900 Rorug03G0076000 Rorug03G0076100 Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG139500 Rh3BG140100 Rh3BG140500 Rh3DG140800 Rh3DG141600
rosa_wichuraiana	Rw3G011420 Rw3G011430 Rw3G011470 Rw3G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	73
AccB7I	CCANNNNNTGG	1 cut(s)	246
AccI	GTMKAC	1 cut(s)	537
AccII	CGCG	2 cut(s)	101, 219
AccIII	TCCGGA	1 cut(s)	351
AciI	CCGC	3 cut(s)	101, 111, 122
AclWI	GGATC	3 cut(s)	40, 659, 797
AcoI	YGGCCR	1 cut(s)	344
AcsI	RAATTY	1 cut(s)	929
AcuI	CTGAAG	1 cut(s)	206
AcvI	CACGTG	1 cut(s)	521
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	4 cut(s)	276, 332, 775, 914
AfiI	CCNNNNNNNGG	2 cut(s)	56, 246
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	2 cut(s)	200, 389
AjnI	CCWGG	3 cut(s)	68, 82, 637
AluBI	AGCT	4 cut(s)	28, 464, 496, 577
AluI	AGCT	4 cut(s)	28, 464, 496, 577
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	3 cut(s)	40, 659, 797
AlwNI	CAGNNNCTG	1 cut(s)	695
Ama87I	CYCGRG	1 cut(s)	459
Aor13HI	TCCGGA	1 cut(s)	351
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	1 cut(s)	565
ApoI	RAATTY	1 cut(s)	929
ArsI	GACNNNNNNTTYG	4 cut(s)	482, 514, 648, 680
AspLEI	GCGC	2 cut(s)	41, 219
AspS9I	GGNCC	2 cut(s)	66, 908
AsuHPI	GGTGA	5 cut(s)	223, 599, 615, 671, 879
AvaI	CYCGRG	1 cut(s)	459
AvaII	GGWCC	2 cut(s)	66, 908
BalI	TGGCCA	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	635
BbrPI	CACGTG	1 cut(s)	521
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	577
BccI	CCATC	2 cut(s)	561, 873
BceAI	ACGGC	2 cut(s)	98, 172
BciT130I	CCWGG	3 cut(s)	70, 84, 639
BclI	TGATCA	2 cut(s)	256, 873
BcoDI	GTCTC	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	42
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	2 cut(s)	111, 566
BlsI	GCNGC	2 cut(s)	112, 567
Bme1390I	CCNGG	3 cut(s)	70, 84, 639
Bme18I	GGWCC	2 cut(s)	66, 908
BmeT110I	CYCGRG	1 cut(s)	459
BmgT120I	GGNCC	2 cut(s)	66, 908
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	3 cut(s)	70, 84, 639
BmrI	ACTGGG	1 cut(s)	638
BmuI	ACTGGG	1 cut(s)	638
BpmI	CTGGAG	1 cut(s)	249
BsaAI	YACGTR	1 cut(s)	521
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	82, 597
BsaWI	WCCGGW	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 246
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	3 cut(s)	318, 347, 633
Bse3DI	GCAATG	2 cut(s)	166, 435
BseAI	TCCGGA	1 cut(s)	351
BseBI	CCWGG	3 cut(s)	70, 84, 639
BseDI	CCNNGG	2 cut(s)	82, 597
BseGI	GGATG	2 cut(s)	360, 553
BseLI	CCNNNNNNNGG	2 cut(s)	56, 246
BseMI	GCAATG	2 cut(s)	166, 435
BseMII	CTCAG	2 cut(s)	290, 687
BseNI	ACTGG	3 cut(s)	318, 347, 633
BseXI	GCAGC	1 cut(s)	577
Bsh1236I	CGCG	2 cut(s)	101, 219
BshFI	GGCC	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	459
BsiSI	CCGG	3 cut(s)	36, 352, 716
BslFI	GGGAC	2 cut(s)	79, 753
BslI	CCNNNNNNNGG	2 cut(s)	56, 246
BsmAI	GTCTC	1 cut(s)	297
BsmFI	GGGAC	2 cut(s)	79, 753
BsnI	GGCC	1 cut(s)	346
BsoBI	CYCGRG	1 cut(s)	459
Bsp1286I	GDGCHC	2 cut(s)	148, 635
Bsp13I	TCCGGA	1 cut(s)	351
Bsp143I	GATC	5 cut(s)	45, 256, 651, 789, 873
BspACI	CCGC	3 cut(s)	101, 111, 122
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	2 cut(s)	291, 688
BspEI	TCCGGA	1 cut(s)	351
BspFNI	CGCG	2 cut(s)	101, 219
BspLI	GGNNCC	1 cut(s)	67
BspPI	GGATC	3 cut(s)	40, 659, 797
BspQI	GCTCTTC	1 cut(s)	735
BsrDI	GCAATG	2 cut(s)	166, 435
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	3 cut(s)	318, 347, 633
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	82, 597
BssMI	GATC	5 cut(s)	45, 256, 651, 789, 873
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	597
Bst2UI	CCWGG	3 cut(s)	70, 84, 639
Bst4CI	ACNGT	2 cut(s)	195, 691
Bst6I	CTCTTC	2 cut(s)	195, 735
BstACI	GRCGYC	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	725
BstBAI	YACGTR	1 cut(s)	521
BstC8I	GCNNGC	1 cut(s)	864
BstDEI	CTNAG	3 cut(s)	42, 299, 696
BstF5I	GGATG	2 cut(s)	360, 553
BstFNI	CGCG	2 cut(s)	101, 219
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	2 cut(s)	41, 219
BstKTI	GATC	5 cut(s)	48, 259, 654, 792, 876
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	5 cut(s)	45, 256, 651, 789, 873
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 107, 119, 574, 725
BstNI	CCWGG	3 cut(s)	70, 84, 639
BstSCI	CCNGG	3 cut(s)	68, 82, 637
BstUI	CGCG	2 cut(s)	101, 219
BstV1I	GCAGC	1 cut(s)	577
BstX2I	RGATCY	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	346
BtsCI	GGATG	2 cut(s)	360, 553
BtsIMutI	CAGTG	2 cut(s)	340, 626
Cac8I	GCNNGC	1 cut(s)	864
CaiI	CAGNNNCTG	1 cut(s)	695
CfoI	GCGC	2 cut(s)	41, 219
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	66, 908
CseI	GACGC	2 cut(s)	76, 107
Csp6I	GTAC	4 cut(s)	275, 331, 774, 913
CviAII	CATG	2 cut(s)	260, 648
CviQI	GTAC	4 cut(s)	275, 331, 774, 913
DdeI	CTNAG	3 cut(s)	42, 299, 696
DpnI	GATC	5 cut(s)	47, 258, 653, 791, 875
DpnII	GATC	5 cut(s)	45, 256, 651, 789, 873
DrdI	GACNNNNNNGTC	1 cut(s)	73
DseDI	GACNNNNNNGTC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	344
Eam1104I	CTCTTC	2 cut(s)	195, 735
EarI	CTCTTC	2 cut(s)	195, 735
Eco130I	CCWWGG	1 cut(s)	597
Eco24I	GRGCYC	1 cut(s)	635
Eco32I	GATATC	1 cut(s)	409
Eco47I	GGWCC	2 cut(s)	66, 908
Eco57I	CTGAAG	1 cut(s)	206
Eco72I	CACGTG	1 cut(s)	521
Eco88I	CYCGRG	1 cut(s)	459
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	929
EcoRII	CCWGG	3 cut(s)	68, 82, 637
EcoRV	GATATC	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	597
EcoT38I	GRGCYC	1 cut(s)	635
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	2 cut(s)	263, 651
FaiI	YATR	8 cut(s)	261, 321, 338, 444, 649, 756, 900, 949
FalI	AAGNNNNNCTT	2 cut(s)	714, 746
FaqI	GGGAC	2 cut(s)	79, 753
FatI	CATG	2 cut(s)	259, 647
FauI	CCCGC	1 cut(s)	115
FbaI	TGATCA	2 cut(s)	256, 873
FblI	GTMKAC	1 cut(s)	537
Fnu4HI	GCNGC	2 cut(s)	111, 566
FokI	GGATG	2 cut(s)	367, 540
FriOI	GRGCYC	1 cut(s)	635
Fsp4HI	GCNGC	2 cut(s)	111, 566
GlaI	GCGC	2 cut(s)	40, 218
GluI	GCNGC	2 cut(s)	111, 566
GsuI	CTGGAG	1 cut(s)	249
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	3 cut(s)	36, 352, 716
HgaI	GACGC	2 cut(s)	76, 107
HhaI	GCGC	2 cut(s)	41, 219
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	263, 651
Hin6I	GCGC	2 cut(s)	39, 217
HinP1I	GCGC	2 cut(s)	39, 217
HincII	GTYRAC	2 cut(s)	325, 538
HindII	GTYRAC	2 cut(s)	325, 538
HinfI	GANTC	3 cut(s)	295, 446, 679
HpaII	CCGG	3 cut(s)	36, 352, 716
HphI	GGTGA	5 cut(s)	223, 599, 615, 671, 879
Hpy166II	GTNNAC	4 cut(s)	106, 325, 538, 607
Hpy188I	TCNGA	6 cut(s)	186, 300, 502, 678, 853, 878
Hpy188III	TCNNGA	5 cut(s)	247, 266, 352, 450, 615
Hpy8I	GTNNAC	4 cut(s)	106, 325, 538, 607
Hpy99I	CGWCG	4 cut(s)	55, 92, 95, 101
HpyAV	CCTTC	3 cut(s)	160, 355, 567
HpyCH4III	ACNGT	2 cut(s)	195, 691
HpyCH4IV	ACGT	2 cut(s)	520, 580
HpyCH4V	TGCA	3 cut(s)	310, 518, 745
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 107, 119, 574, 725
HpyF3I	CTNAG	3 cut(s)	42, 299, 696
HpySE526I	ACGT	2 cut(s)	520, 580
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	263, 651
HspAI	GCGC	2 cut(s)	39, 217
Kpn2I	TCCGGA	1 cut(s)	351
Ksp22I	TGATCA	2 cut(s)	256, 873
Kzo9I	GATC	5 cut(s)	45, 256, 651, 789, 873
LguI	GCTCTTC	1 cut(s)	735
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	1 cut(s)	577
MaeII	ACGT	2 cut(s)	520, 580
MaeIII	GTNAC	1 cut(s)	685
MalI	GATC	5 cut(s)	47, 258, 653, 791, 875
MboI	GATC	5 cut(s)	45, 256, 651, 789, 873
MboII	GAAGA	7 cut(s)	13, 199, 212, 281, 370, 722, 755
MflI	RGATCY	1 cut(s)	45
MhlI	GDGCHC	2 cut(s)	148, 635
MlsI	TGGCCA	1 cut(s)	346
MluCI	AATT	5 cut(s)	135, 478, 701, 855, 929
MluNI	TGGCCA	1 cut(s)	346
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	7 cut(s)	196, 214, 247, 274, 537, 780, 919
Mox20I	TGGCCA	1 cut(s)	346
MroI	TCCGGA	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	346
MseI	TTAA	2 cut(s)	381, 669
Msp20I	TGGCCA	1 cut(s)	346
MspI	CCGG	3 cut(s)	36, 352, 716
MspR9I	CCNGG	3 cut(s)	70, 84, 639
MvaI	CCWGG	3 cut(s)	70, 84, 639
MvnI	CGCG	2 cut(s)	101, 219
MwoI	GCNNNNNNNGC	5 cut(s)	93, 107, 119, 574, 725
NdeII	GATC	5 cut(s)	45, 256, 651, 789, 873
NlaIII	CATG	2 cut(s)	263, 651
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	685
PaeR7I	CTCGAG	1 cut(s)	459
PciSI	GCTCTTC	1 cut(s)	735
PfeI	GAWTC	2 cut(s)	446, 679
PflMI	CCANNNNNTGG	1 cut(s)	246
PfoI	TCCNGGA	1 cut(s)	637
PkrI	GCNGC	2 cut(s)	112, 567
PleI	GAGTC	1 cut(s)	289
PmaCI	CACGTG	1 cut(s)	521
PmlI	CACGTG	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	289
Ppu21I	YACGTR	1 cut(s)	521
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	3 cut(s)	68, 82, 637
PspCI	CACGTG	1 cut(s)	521
PspGI	CCWGG	3 cut(s)	68, 82, 637
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	2 cut(s)	66, 908
PspPPI	RGGWCCY	1 cut(s)	66
PspXI	VCTCGAGB	1 cut(s)	459
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	45
RsaI	GTAC	4 cut(s)	276, 332, 775, 914
RsaNI	GTAC	4 cut(s)	275, 331, 774, 913
SalI	GTCGAC	1 cut(s)	536
SapI	GCTCTTC	1 cut(s)	735
SaqAI	TTAA	2 cut(s)	381, 669
SatI	GCNGC	2 cut(s)	111, 566
Sau3AI	GATC	5 cut(s)	45, 256, 651, 789, 873
Sau96I	GGNCC	2 cut(s)	66, 908
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	3 cut(s)	70, 84, 639
SduI	GDGCHC	2 cut(s)	148, 635
Sfr274I	CTCGAG	1 cut(s)	459
SgrAI	CRCCGGYG	1 cut(s)	35
SinI	GGWCC	2 cut(s)	66, 908
SlaI	CTCGAG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	459
SmoI	CTYRAG	1 cut(s)	459
Sse9I	AATT	5 cut(s)	135, 478, 701, 855, 929
SsiI	CCGC	3 cut(s)	101, 111, 122
StyD4I	CCNGG	3 cut(s)	68, 82, 637
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	2 cut(s)	195, 691
TaiI	ACGT	2 cut(s)	523, 583
TaqI	TCGA	4 cut(s)	24, 53, 460, 537
TasI	AATT	5 cut(s)	135, 478, 701, 855, 929
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	2 cut(s)	446, 679
Tru1I	TTAA	2 cut(s)	381, 669
Tru9I	TTAA	2 cut(s)	381, 669
TscAI	CASTG	2 cut(s)	347, 633
TseFI	GTSAC	1 cut(s)	685
TseI	GCWGC	1 cut(s)	565
Tsp45I	GTSAC	1 cut(s)	685
TspDTI	ATGAA	3 cut(s)	371, 795, 884
TspGWI	ACGGA	1 cut(s)	900
TspRI	CASTG	2 cut(s)	347, 633
Van91I	CCANNNNNTGG	1 cut(s)	246
VpaK11BI	GGWCC	2 cut(s)	66, 908
XapI	RAATTY	1 cut(s)	929
XhoI	CTCGAG	1 cut(s)	459
XmiI	GTMKAC	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.