Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001859

Physical Location & Seq

Genomic Coordinates Forward (+)

5921116 .. 5923411

Gene Structure 2296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0075900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGATTTCCAGATGAACAGGATCCAAGTAGCGGCCTTCATTGCTGGCATCATCGTCCTCAGTATCACAGCTGAAAAATGTCGGCAGCTGGTTGGGGAAGAGCATTCGTCTCAGAGTGGGAAGTTTACAATTATGAACTGCTTTGATATGAGTTCTGGAACACTAGCTTGTGGGGTGAAAGAGGGTGTGAAACTATATGCCAACAACATCAGATCTGCTCATGTCGAGGCAGCAAGGCATAAAGCAATCGAAGGTGCTTTGGCTGATGCATTGTCACAGGGGATGGGTTCTAAAGAAGCAGCCAAGCTAGCACAGAAAGCAGGAGCAAAGGCAGCAAAATTAGCAAAACGGCAAGCCAAGCGGATAATAGGTCCTATAATCTCGTCTGGATGGGACTTTTCCGAAGCTATATACTACGGTGGTGCAGTGACAGAAGGGATCGTCAGGGGCACTGGCACCTTGTTTGGCACCTATGCTGGAGGCTTTCTAGGAGACCAAAGGCTTGGGAGATTTGGTTATCTTGTGGGAAGTCAGTTGGGCAGTTGGGTAGGAGGTAGGATTGGATTGATGGTCTATGATGTGATTAGTGGAGTTAATTACATAATTAGATTTGGTATACCCGAAAGTAGTGAAGTTGGTGAAGCTCCTCCTTATGAAAGTTCTGATGACTCTTACGTTAGTGAAGCCCCTACATACACGAGCTCTGAAGATTCTTACATTAGTCAATTGGGCAGCTGGGTAAGAGGTAGGATTAAATTGATGGTCTATGATGTGATTTTTGGTATACCCGAAAGTAGTGAAGTTGGTGAAGCTCCTCCGTATGAAAGTTCTGATGACTCTTACGTCAGTGAAGCCCCTGCATACACGAGCTCTGAAGATTCTAACGTATATGAGTCTTCATACGTATCTTCCAATGAAGAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

308

Amino Acids

32.95

Weight (kDa)

4.88

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37770
fragaria_vesca	FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020
malus_domestica	MD12G1150200.v1.1
prunus_persica	Prupe.6G094300_v2.0.a1 Prupe.6G261900_v2.0.a1
pyrus_communis	pycom04g12320 pycom12g14390 pycom12g14400
rosa_chinensis	RchiOBHm_Chr3g0465151 RchiOBHm_Chr3g0465231 RchiOBHm_Chr3g0465271 RchiOBHm_Chr3g0465311
rosa_laevigata	RLG00000024648 RLG00000024651 RLG00000024653
rosa_multiflora	Rmu_co8067008.1_g000001 Rmu_co8210356.1_g000001 Rmu_sc0003386.1_g000008 Rmu_sc0003386.1_g000010 Rmu_sc0003492.1_g000019 Rmu_sc0018026.1_g000002 Rmu_sc0021566.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415190 Rroxscaffold_6G00415200
rosa_rugosa	Rorug03G0075800 Rorug03G0075900 Rorug03G0076000 Rorug03G0076100 Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG139500 Rh3BG140100 Rh3BG140500 Rh3DG140800 Rh3DG141600
rosa_wichuraiana	Rw3G011420 Rw3G011430 Rw3G011470 Rw3G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	842
AccB1I	GGYRCC	2 cut(s)	455, 467
AccI	GTMKAC	2 cut(s)	616, 784
AciI	CCGC	2 cut(s)	32, 361
AclWI	GGATC	3 cut(s)	16, 29, 446
AcuI	CTGAAG	2 cut(s)	726, 894
AfiI	CCNNNNNNNGG	1 cut(s)	31
Alw21I	GWGCWC	3 cut(s)	704, 872, 924
Alw26I	GTCTC	2 cut(s)	114, 486
AlwI	GGATC	3 cut(s)	16, 29, 446
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	5 cut(s)	85, 230, 299, 332, 732
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	3 cut(s)	187, 650, 818
AsuNHI	GCTAGC	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	452
BamHI	GGATCC	1 cut(s)	21
BanI	GGYRCC	2 cut(s)	455, 467
BanII	GRGCYC	3 cut(s)	704, 872, 924
BauI	CACGAG	2 cut(s)	697, 865
BbsI	GAAGAC	1 cut(s)	888
Bbv12I	GWGCWC	3 cut(s)	704, 872, 924
BbvI	GCAGC	5 cut(s)	97, 242, 311, 344, 744
BccI	CCATC	4 cut(s)	277, 384, 562, 754
BceAI	ACGGC	1 cut(s)	365
BcoDI	GTCTC	2 cut(s)	114, 486
BfaI	CTAG	3 cut(s)	164, 308, 488
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	6 cut(s)	33, 86, 231, 300, 333, 733
BlsI	GCNGC	6 cut(s)	34, 87, 232, 301, 334, 734
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	3 cut(s)	23, 457, 469
BmsI	GCATC	2 cut(s)	57, 256
BmtI	GCTAGC	1 cut(s)	311
BpiI	GAAGAC	1 cut(s)	888
BpmI	CTGGAG	1 cut(s)	498
BsaAI	YACGTR	1 cut(s)	904
BsaI	GGTCTC	1 cut(s)	486
BsaXI	ACNNNNNCTCC	2 cut(s)	499, 529
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	457
Bse3DI	GCAATG	1 cut(s)	39
BseGI	GGATG	2 cut(s)	288, 395
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	2 cut(s)	73, 125
BseNI	ACTGG	1 cut(s)	457
BseRI	GAGGAG	2 cut(s)	636, 804
BseSI	GKGCMC	1 cut(s)	452
BseXI	GCAGC	5 cut(s)	97, 242, 311, 344, 744
BseYI	CCCAGC	1 cut(s)	735
BsgI	GTGCAG	1 cut(s)	444
BshFI	GGCC	1 cut(s)	35
BshNI	GGYRCC	2 cut(s)	455, 467
BsiHKAI	GWGCWC	3 cut(s)	704, 872, 924
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	2 cut(s)	114, 486
BsmBI	CGTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	407
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	35
Bso31I	GGTCTC	1 cut(s)	486
Bsp1286I	GDGCHC	4 cut(s)	452, 704, 872, 924
Bsp143I	GATC	3 cut(s)	21, 212, 438
BspACI	CCGC	2 cut(s)	32, 361
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	2 cut(s)	72, 124
BspLI	GGNNCC	3 cut(s)	23, 457, 469
BspOI	GCTAGC	1 cut(s)	311
BspPI	GGATC	3 cut(s)	16, 29, 446
BspQI	GCTCTTC	2 cut(s)	93, 912
BspT107I	GGYRCC	2 cut(s)	455, 467
BspTNI	GGTCTC	1 cut(s)	486
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	457
BssMI	GATC	3 cut(s)	21, 212, 438
BssNAI	GTATAC	2 cut(s)	617, 785
BssSI	CACGAG	2 cut(s)	697, 865
Bst1107I	GTATAC	2 cut(s)	617, 785
Bst2BI	CACGAG	2 cut(s)	697, 865
Bst4CI	ACNGT	1 cut(s)	419
Bst6I	CTCTTC	2 cut(s)	93, 912
BstBAI	YACGTR	1 cut(s)	904
BstC8I	GCNNGC	3 cut(s)	46, 309, 354
BstDEI	CTNAG	2 cut(s)	59, 111
BstF5I	GGATG	2 cut(s)	288, 395
BstKTI	GATC	3 cut(s)	24, 215, 441
BstMAI	GTCTC	2 cut(s)	114, 486
BstMBI	GATC	3 cut(s)	21, 212, 438
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 308, 317, 332, 341, 358
BstSLI	GKGCMC	1 cut(s)	452
BstSNI	TACGTA	1 cut(s)	904
BstV1I	GCAGC	5 cut(s)	97, 242, 311, 344, 744
BstV2I	GAAGAC	1 cut(s)	888
BstX2I	RGATCY	2 cut(s)	21, 212
BstXI	CCANNNNNNTGG	1 cut(s)	503
BstYI	RGATCY	2 cut(s)	21, 212
BstZ17I	GTATAC	2 cut(s)	617, 785
BsuRI	GGCC	1 cut(s)	35
BtsCI	GGATG	2 cut(s)	288, 395
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	3 cut(s)	432, 450, 853
Cac8I	GCNNGC	3 cut(s)	46, 309, 354
Cfr13I	GGNCC	1 cut(s)	371
CviAII	CATG	1 cut(s)	221
DdeI	CTNAG	2 cut(s)	59, 111
DpnI	GATC	3 cut(s)	23, 214, 440
DpnII	GATC	3 cut(s)	21, 212, 438
DrdI	GACNNNNNNGTC	1 cut(s)	842
DseDI	GACNNNNNNGTC	1 cut(s)	842
Eam1104I	CTCTTC	2 cut(s)	93, 912
EarI	CTCTTC	2 cut(s)	93, 912
Ecl136II	GAGCTC	3 cut(s)	702, 870, 922
Eco105I	TACGTA	1 cut(s)	904
Eco24I	GRGCYC	3 cut(s)	704, 872, 924
Eco31I	GGTCTC	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	371
Eco53kI	GAGCTC	3 cut(s)	702, 870, 922
Eco57I	CTGAAG	2 cut(s)	726, 894
EcoICRI	GAGCTC	3 cut(s)	702, 870, 922
EcoO109I	RGGNCCY	1 cut(s)	371
EcoT22I	ATGCAT	1 cut(s)	271
EcoT38I	GRGCYC	3 cut(s)	704, 872, 924
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	1 cut(s)	224
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	1 cut(s)	220
FblI	GTMKAC	2 cut(s)	616, 784
Fnu4HI	GCNGC	6 cut(s)	33, 86, 231, 300, 333, 733
FokI	GGATG	2 cut(s)	295, 402
FriOI	GRGCYC	3 cut(s)	704, 872, 924
Fsp4HI	GCNGC	6 cut(s)	33, 86, 231, 300, 333, 733
FspBI	CTAG	3 cut(s)	164, 308, 488
GluI	GCNGC	6 cut(s)	33, 86, 231, 300, 333, 733
GsaI	CCCAGC	1 cut(s)	739
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	35
Hin1II	CATG	1 cut(s)	224
HinfI	GANTC	5 cut(s)	668, 710, 836, 878, 893
HphI	GGTGA	3 cut(s)	187, 650, 818
Hpy166II	GTNNAC	3 cut(s)	126, 617, 785
Hpy188I	TCNGA	8 cut(s)	114, 212, 403, 664, 706, 832, 874, 926
Hpy188III	TCNNGA	3 cut(s)	10, 156, 387
Hpy8I	GTNNAC	3 cut(s)	126, 617, 785
HpyAV	CCTTC	3 cut(s)	46, 245, 428
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4IV	ACGT	4 cut(s)	675, 843, 885, 903
HpyCH4V	TGCA	3 cut(s)	269, 425, 860
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 308, 317, 332, 341, 358
HpyF3I	CTNAG	2 cut(s)	59, 111
HpySE526I	ACGT	4 cut(s)	675, 843, 885, 903
Hsp92II	CATG	1 cut(s)	224
Kzo9I	GATC	3 cut(s)	21, 212, 438
LguI	GCTCTTC	2 cut(s)	93, 912
LmnI	GCTCC	3 cut(s)	323, 649, 817
Lsp1109I	GCAGC	5 cut(s)	97, 242, 311, 344, 744
LweI	GCATC	2 cut(s)	57, 256
MaeI	CTAG	3 cut(s)	164, 308, 488
MaeII	ACGT	4 cut(s)	675, 843, 885, 903
MaeIII	GTNAC	2 cut(s)	273, 427
MalI	GATC	3 cut(s)	23, 214, 440
MboI	GATC	3 cut(s)	21, 212, 438
MboII	GAAGA	5 cut(s)	110, 719, 887, 888, 900
MfeI	CAATTG	1 cut(s)	725
MflI	RGATCY	2 cut(s)	21, 212
MhlI	GDGCHC	4 cut(s)	452, 704, 872, 924
MluCI	AATT	6 cut(s)	129, 338, 595, 603, 725, 755
MlyI	GAGTC	3 cut(s)	662, 830, 902
MnlI	CCTC	8 cut(s)	68, 175, 220, 473, 545, 657, 737, 825
Mph1103I	ATGCAT	1 cut(s)	271
MseI	TTAA	2 cut(s)	594, 753
MspA1I	CMGCKG	3 cut(s)	71, 88, 735
MunI	CAATTG	1 cut(s)	725
Mva1269I	GAATGC	1 cut(s)	103
MwoI	GCNNNNNNNGC	6 cut(s)	41, 308, 317, 332, 341, 358
NdeII	GATC	3 cut(s)	21, 212, 438
NheI	GCTAGC	1 cut(s)	307
NlaIII	CATG	1 cut(s)	224
NlaIV	GGNNCC	3 cut(s)	23, 457, 469
NmuCI	GTSAC	2 cut(s)	273, 427
NsiI	ATGCAT	1 cut(s)	271
PciSI	GCTCTTC	2 cut(s)	93, 912
PctI	GAATGC	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	710, 878
PkrI	GCNGC	6 cut(s)	34, 87, 232, 301, 334, 734
PleI	GAGTC	3 cut(s)	662, 830, 901
PpsI	GAGTC	3 cut(s)	662, 830, 901
Ppu21I	YACGTR	1 cut(s)	904
PpuMI	RGGWCCY	1 cut(s)	371
Psp124BI	GAGCTC	3 cut(s)	704, 872, 924
Psp5II	RGGWCCY	1 cut(s)	371
PspFI	CCCAGC	1 cut(s)	735
PspN4I	GGNNCC	3 cut(s)	23, 457, 469
PspPI	GGNCC	1 cut(s)	371
PspPPI	RGGWCCY	1 cut(s)	371
PsuI	RGATCY	2 cut(s)	21, 212
PvuII	CAGCTG	3 cut(s)	71, 88, 735
SacI	GAGCTC	3 cut(s)	704, 872, 924
SapI	GCTCTTC	2 cut(s)	93, 912
SaqAI	TTAA	2 cut(s)	594, 753
SatI	GCNGC	6 cut(s)	33, 86, 231, 300, 333, 733
Sau3AI	GATC	3 cut(s)	21, 212, 438
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	3 cut(s)	662, 830, 902
SduI	GDGCHC	4 cut(s)	452, 704, 872, 924
SfaNI	GCATC	2 cut(s)	57, 256
SinI	GGWCC	1 cut(s)	371
SnaBI	TACGTA	1 cut(s)	904
Sse9I	AATT	6 cut(s)	129, 338, 595, 603, 725, 755
SsiI	CCGC	2 cut(s)	32, 361
SspMI	CTAG	3 cut(s)	164, 308, 488
SstI	GAGCTC	3 cut(s)	704, 872, 924
TaaI	ACNGT	1 cut(s)	419
TaiI	ACGT	4 cut(s)	678, 846, 888, 906
TaqI	TCGA	2 cut(s)	225, 249
TasI	AATT	6 cut(s)	129, 338, 595, 603, 725, 755
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	2 cut(s)	710, 878
Tru1I	TTAA	2 cut(s)	594, 753
Tru9I	TTAA	2 cut(s)	594, 753
TscAI	CASTG	3 cut(s)	432, 457, 853
TseFI	GTSAC	2 cut(s)	273, 427
TseI	GCWGC	5 cut(s)	85, 230, 299, 332, 732
Tsp45I	GTSAC	2 cut(s)	273, 427
TspDTI	ATGAA	6 cut(s)	28, 29, 149, 669, 837, 888
TspGWI	ACGGA	1 cut(s)	807
TspRI	CASTG	3 cut(s)	432, 457, 853
VpaK11BI	GGWCC	1 cut(s)	371
XmiI	GTMKAC	2 cut(s)	616, 784
XspI	CTAG	3 cut(s)	164, 308, 488
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.