Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001859

Physical Location & Seq

Genomic Coordinates Forward (+)

5927199 .. 5928567

Gene Structure 1369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0076000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTGCTGCCATGGCGATGCTTTGGTCCAAAGAGTTTGCGAACTCTACGAGCAAATCTCAAGCCTCGAGAGCCTTAAACCCTCCCAAGATGTCAACACTCTCTTCACCCAACTCGTTCTCACATGCATGCCACCAAATCCAATCGATGTCACCAAGCTATGCAAAAGTGTGCAAGAAATAAGGTCAAACCTCATAAGACTCTGCGGAGAAGCAGAAGGACTCTTGGAGTCTCATTTCTCCACCATCCTTGGCTCCTATGAAAACCCTCTTCACCATCTCGACATTTTCCCTTACTACTCCAACTACCTCAAGCTCAGCAAACTCGAGCACTCAATCCTCACCCAACACTTTCCTCAGGTACCTTCGAAAATAGCCTTTGTGGGTTCTGGCCCTCTTCCCCTTACCTCGATTGTCTTGGCCTCAAACCACCTCACCACTACCTCTTTCCACAACTATGATATCGACCCTTTGGCCAATTCCAAGGCTCTTGGCTTGGTTGAATCTGATCCTGACCTGTCCAAGAGGATGGTGTTCCACACCACTGACATAATGGATGTCACGAGTGGTTTGAAGAACTATGAAGTGGTGTTTCTTGCTGCTCTGGTTGGGATGGACAAGTCTGCGAAGGTGAAGATCATTGAGCACTTGGCCGAGAACATGAATCCCGGAGCGATTTTGATGCTGAGGAGTGCTCATGGTGCTAGGGCTTTTCTGTATCCGGTGATTGACCCTTGTGTTGATCTTGTAGGTTTTGAGGTTCTTTCTGTGTTTCACCCTACTGATGAAGTTATTAACTCGGTTGTGATTGCCCGGAGATCCTCGTATGCACCACCGGCGGGGATACACTCATCGCCGCTCGATCAGAAGGCTGGGCTTAATGTTGGTACTGTAAAACTTCCGAACAAGTGCTCTGAGGTTGAAGCCTTCAATCCTCTCAATCATGGCAACAATATGATCGAGGAATTGGCCTTTGATCAGGAGCAGCTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

330

Amino Acids

36.29

Weight (kDa)

5.47

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAS	PF03059	6 - 273	1.1e-132	Nicotianamine synthase protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37770
fragaria_vesca	FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020
malus_domestica	MD12G1150200.v1.1
prunus_persica	Prupe.6G094300_v2.0.a1 Prupe.6G261900_v2.0.a1
pyrus_communis	pycom04g12320 pycom12g14390 pycom12g14400
rosa_chinensis	RchiOBHm_Chr3g0465151 RchiOBHm_Chr3g0465231 RchiOBHm_Chr3g0465271 RchiOBHm_Chr3g0465311
rosa_laevigata	RLG00000024648 RLG00000024651 RLG00000024653
rosa_multiflora	Rmu_co8067008.1_g000001 Rmu_co8210356.1_g000001 Rmu_sc0003386.1_g000008 Rmu_sc0003386.1_g000010 Rmu_sc0003492.1_g000019 Rmu_sc0018026.1_g000002 Rmu_sc0021566.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415190 Rroxscaffold_6G00415200
rosa_rugosa	Rorug03G0075800 Rorug03G0075900 Rorug03G0076000 Rorug03G0076100 Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG139500 Rh3BG140100 Rh3BG140500 Rh3DG140800 Rh3DG141600
rosa_wichuraiana	Rw3G011420 Rw3G011430 Rw3G011470 Rw3G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	358
AccB1I	GGYRCC	1 cut(s)	358
AccBSI	CCGCTC	1 cut(s)	856
AciI	CCGC	3 cut(s)	204, 836, 854
AclWI	GGATC	2 cut(s)	500, 810
AcoI	YGGCCR	2 cut(s)	471, 648
AfaI	GTAC	2 cut(s)	360, 886
AfiI	CCNNNNNNNGG	1 cut(s)	836
AgsI	TTSAA	4 cut(s)	500, 571, 920, 928
AluBI	AGCT	3 cut(s)	157, 313, 985
AluI	AGCT	3 cut(s)	157, 313, 985
Alw21I	GWGCWC	4 cut(s)	330, 645, 694, 911
Alw26I	GTCTC	1 cut(s)	234
AlwI	GGATC	2 cut(s)	500, 810
Ama87I	CYCGRG	2 cut(s)	65, 323
AoxI	GGCC	5 cut(s)	388, 417, 471, 648, 966
ApeKI	GCWGC	3 cut(s)	6, 596, 982
Asp718I	GGTACC	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	25, 389
AsuC2I	CCSGG	2 cut(s)	666, 811
AsuHPI	GGTGA	8 cut(s)	97, 142, 263, 331, 424, 640, 733, 764
AsuII	TTCGAA	1 cut(s)	365
AvaI	CYCGRG	2 cut(s)	65, 323
AvaII	GGWCC	1 cut(s)	25
AxyI	CCTNAGG	1 cut(s)	354
BalI	TGGCCA	1 cut(s)	473
BanI	GGYRCC	1 cut(s)	358
BauI	CACGAG	1 cut(s)	559
Bbv12I	GWGCWC	4 cut(s)	330, 645, 694, 911
BbvCI	CCTCAGC	1 cut(s)	683
BbvI	GCAGC	1 cut(s)	583
BccI	CCATC	4 cut(s)	251, 282, 520, 604
BcgI	CGANNNNNNTGC	2 cut(s)	661, 695
BciVI	GTATCC	2 cut(s)	726, 834
BclI	TGATCA	1 cut(s)	973
BcnI	CCSGG	2 cut(s)	666, 811
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	1 cut(s)	702
BfuI	GTATCC	2 cut(s)	726, 834
BisI	GCNGC	4 cut(s)	7, 597, 854, 983
BlpI	GCTNAGC	1 cut(s)	314
BlsI	GCNGC	4 cut(s)	8, 598, 855, 984
Bme1390I	CCNGG	2 cut(s)	666, 811
Bme18I	GGWCC	1 cut(s)	25
BmeT110I	CYCGRG	2 cut(s)	65, 323
BmgT120I	GGNCC	2 cut(s)	25, 389
BmiI	GGNNCC	2 cut(s)	253, 360
BmrFI	CCNGG	2 cut(s)	666, 811
BmsI	GCATC	2 cut(s)	7, 669
BplI	GAGNNNNNCTC	4 cut(s)	41, 73, 676, 708
Bpu10I	CCTNAGC	1 cut(s)	683
Bpu1102I	GCTNAGC	1 cut(s)	314
Bpu14I	TTCGAA	1 cut(s)	365
BpuEI	CTTGAG	2 cut(s)	43, 293
BpuMI	CCSGG	2 cut(s)	666, 811
Bsa29I	ATCGAT	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	10, 247, 480
BsaWI	WCCGGW	1 cut(s)	718
Bsc4I	CCNNNNNNNGG	1 cut(s)	836
Bse118I	RCCGGY	1 cut(s)	832
Bse21I	CCTNAGG	1 cut(s)	354
BseCI	ATCGAT	1 cut(s)	144
BseDI	CCNNGG	3 cut(s)	10, 247, 480
BseGI	GGATG	4 cut(s)	243, 531, 559, 615
BseLI	CCNNNNNNNGG	1 cut(s)	836
BseMII	CTCAG	4 cut(s)	328, 368, 674, 903
BseRI	GAGGAG	1 cut(s)	700
BseXI	GCAGC	1 cut(s)	583
BseYI	CCCAGC	1 cut(s)	869
BshFI	GGCC	5 cut(s)	390, 419, 473, 650, 968
BshNI	GGYRCC	1 cut(s)	358
BshVI	ATCGAT	1 cut(s)	144
BsiHKAI	GWGCWC	4 cut(s)	330, 645, 694, 911
BsiHKCI	CYCGRG	2 cut(s)	65, 323
BsiSI	CCGG	4 cut(s)	666, 719, 811, 833
BslI	CCNNNNNNNGG	1 cut(s)	836
BsmAI	GTCTC	1 cut(s)	234
BsnI	GGCC	5 cut(s)	390, 419, 473, 650, 968
BsoBI	CYCGRG	2 cut(s)	65, 323
Bsp119I	TTCGAA	1 cut(s)	365
Bsp1286I	GDGCHC	4 cut(s)	330, 645, 694, 911
Bsp143I	GATC	7 cut(s)	505, 633, 739, 815, 859, 954, 973
Bsp1720I	GCTNAGC	1 cut(s)	314
Bsp19I	CCATGG	1 cut(s)	10
BspACI	CCGC	3 cut(s)	204, 836, 854
BspANI	GGCC	5 cut(s)	390, 419, 473, 650, 968
BspCNI	CTCAG	4 cut(s)	327, 367, 675, 904
BspDI	ATCGAT	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	253, 360
BspPI	GGATC	2 cut(s)	500, 810
BspT104I	TTCGAA	1 cut(s)	365
BspT107I	GGYRCC	1 cut(s)	358
BsrBI	CCGCTC	1 cut(s)	856
BsrFI	RCCGGY	1 cut(s)	832
BssAI	RCCGGY	1 cut(s)	832
BssECI	CCNNGG	3 cut(s)	10, 247, 480
BssMI	GATC	7 cut(s)	505, 633, 739, 815, 859, 954, 973
BssSI	CACGAG	1 cut(s)	559
BssT1I	CCWWGG	3 cut(s)	10, 247, 480
Bst2BI	CACGAG	1 cut(s)	559
Bst4CI	ACNGT	1 cut(s)	889
Bst6I	CTCTTC	3 cut(s)	107, 273, 399
BstBI	TTCGAA	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	128
BstDEI	CTNAG	4 cut(s)	314, 354, 683, 912
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	4 cut(s)	243, 531, 559, 615
BstKTI	GATC	7 cut(s)	508, 636, 742, 818, 862, 957, 976
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	7 cut(s)	505, 633, 739, 815, 859, 954, 973
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 69, 698, 833
BstNSI	RCATGY	2 cut(s)	126, 130
BstSCI	CCNGG	2 cut(s)	664, 809
BstV1I	GCAGC	1 cut(s)	583
BstX2I	RGATCY	1 cut(s)	815
BstXI	CCANNNNNNTGG	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	815
Bsu15I	ATCGAT	1 cut(s)	144
Bsu36I	CCTNAGG	1 cut(s)	354
BsuI	GTATCC	2 cut(s)	726, 834
BsuRI	GGCC	5 cut(s)	390, 419, 473, 650, 968
BsuTUI	ATCGAT	1 cut(s)	144
BtgI	CCRYGG	1 cut(s)	10
BtgZI	GCGATG	2 cut(s)	30, 834
BtsCI	GGATG	4 cut(s)	243, 531, 559, 615
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	1 cut(s)	128
Cfr10I	RCCGGY	1 cut(s)	832
Cfr13I	GGNCC	2 cut(s)	25, 389
ClaI	ATCGAT	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	359, 885
CspCI	CAANNNNNGTGG	2 cut(s)	229, 264
CviAII	CATG	6 cut(s)	11, 123, 127, 658, 695, 941
CviQI	GTAC	2 cut(s)	359, 885
DdeI	CTNAG	4 cut(s)	314, 354, 683, 912
DpnI	GATC	7 cut(s)	507, 635, 741, 817, 861, 956, 975
DpnII	GATC	7 cut(s)	505, 633, 739, 815, 859, 954, 973
EaeI	YGGCCR	2 cut(s)	471, 648
Eam1104I	CTCTTC	3 cut(s)	107, 273, 399
EarI	CTCTTC	3 cut(s)	107, 273, 399
Eco130I	CCWWGG	3 cut(s)	10, 247, 480
Eco32I	GATATC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	25
Eco81I	CCTNAGG	1 cut(s)	354
Eco88I	CYCGRG	2 cut(s)	65, 323
EcoRV	GATATC	1 cut(s)	460
EcoT14I	CCWWGG	3 cut(s)	10, 247, 480
EcoT22I	ATGCAT	1 cut(s)	128
ErhI	CCWWGG	3 cut(s)	10, 247, 480
FaeI	CATG	6 cut(s)	14, 126, 130, 661, 698, 944
FatI	CATG	6 cut(s)	10, 122, 126, 657, 694, 940
FauI	CCCGC	1 cut(s)	829
FbaI	TGATCA	1 cut(s)	973
Fnu4HI	GCNGC	4 cut(s)	7, 597, 854, 983
FokI	GGATG	4 cut(s)	230, 538, 566, 622
Fsp4HI	GCNGC	4 cut(s)	7, 597, 854, 983
FspBI	CTAG	1 cut(s)	702
GluI	GCNGC	4 cut(s)	7, 597, 854, 983
GsaI	CCCAGC	1 cut(s)	873
HaeIII	GGCC	5 cut(s)	390, 419, 473, 650, 968
HapII	CCGG	4 cut(s)	666, 719, 811, 833
Hin1II	CATG	6 cut(s)	14, 126, 130, 661, 698, 944
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	5 cut(s)	198, 219, 227, 500, 661
HpaII	CCGG	4 cut(s)	666, 719, 811, 833
HphI	GGTGA	8 cut(s)	97, 142, 263, 331, 424, 640, 733, 764
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	4 cut(s)	505, 864, 900, 913
Hpy188III	TCNNGA	5 cut(s)	67, 278, 509, 559, 977
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	5 cut(s)	209, 372, 619, 859, 934
HpyCH4III	ACNGT	1 cut(s)	889
HpyCH4V	TGCA	4 cut(s)	126, 162, 172, 827
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 69, 698, 833
HpyF3I	CTNAG	4 cut(s)	314, 354, 683, 912
Hsp92II	CATG	6 cut(s)	14, 126, 130, 661, 698, 944
KpnI	GGTACC	1 cut(s)	362
Ksp22I	TGATCA	1 cut(s)	973
Kzo9I	GATC	7 cut(s)	505, 633, 739, 815, 859, 954, 973
LmnI	GCTCC	3 cut(s)	257, 668, 979
Lsp1109I	GCAGC	1 cut(s)	583
LweI	GCATC	2 cut(s)	7, 669
MaeI	CTAG	1 cut(s)	702
MaeIII	GTNAC	2 cut(s)	148, 556
MalI	GATC	7 cut(s)	507, 635, 741, 817, 861, 956, 975
MbiI	CCGCTC	1 cut(s)	856
MboI	GATC	7 cut(s)	505, 633, 739, 815, 859, 954, 973
MboII	GAAGA	5 cut(s)	94, 260, 386, 583, 643
MflI	RGATCY	1 cut(s)	815
MhlI	GDGCHC	4 cut(s)	330, 645, 694, 911
MlsI	TGGCCA	1 cut(s)	473
MluCI	AATT	2 cut(s)	475, 962
MluNI	TGGCCA	1 cut(s)	473
MlyI	GAGTC	3 cut(s)	192, 213, 236
MmeI	TCCRAC	1 cut(s)	324
Mox20I	TGGCCA	1 cut(s)	473
Mph1103I	ATGCAT	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	473
MseI	TTAA	3 cut(s)	75, 792, 876
MslI	CAYNNNNRTG	3 cut(s)	15, 125, 453
Msp20I	TGGCCA	1 cut(s)	473
MspI	CCGG	4 cut(s)	666, 719, 811, 833
MspR9I	CCNGG	2 cut(s)	666, 811
MwoI	GCNNNNNNNGC	4 cut(s)	12, 69, 698, 833
NciI	CCSGG	2 cut(s)	666, 811
NcoI	CCATGG	1 cut(s)	10
NdeII	GATC	7 cut(s)	505, 633, 739, 815, 859, 954, 973
NlaIII	CATG	6 cut(s)	14, 126, 130, 661, 698, 944
NlaIV	GGNNCC	2 cut(s)	253, 360
NmeAIII	GCCGAG	1 cut(s)	676
NmuCI	GTSAC	2 cut(s)	148, 556
NsiI	ATGCAT	1 cut(s)	128
NspI	RCATGY	2 cut(s)	126, 130
NspV	TTCGAA	1 cut(s)	365
PaeI	GCATGC	1 cut(s)	130
PaeR7I	CTCGAG	2 cut(s)	65, 323
PfeI	GAWTC	2 cut(s)	500, 661
PfoI	TCCNGGA	1 cut(s)	664
PkrI	GCNGC	4 cut(s)	8, 598, 855, 984
PleI	GAGTC	3 cut(s)	192, 213, 235
PpsI	GAGTC	3 cut(s)	192, 213, 235
PspFI	CCCAGC	1 cut(s)	869
PspN4I	GGNNCC	2 cut(s)	253, 360
PspPI	GGNCC	2 cut(s)	25, 389
PspXI	VCTCGAGB	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	815
RsaI	GTAC	2 cut(s)	360, 886
RsaNI	GTAC	2 cut(s)	359, 885
RseI	CAYNNNNRTG	3 cut(s)	15, 125, 453
SaqAI	TTAA	3 cut(s)	75, 792, 876
SatI	GCNGC	4 cut(s)	7, 597, 854, 983
Sau3AI	GATC	7 cut(s)	505, 633, 739, 815, 859, 954, 973
Sau96I	GGNCC	2 cut(s)	25, 389
SchI	GAGTC	3 cut(s)	192, 213, 236
ScrFI	CCNGG	2 cut(s)	666, 811
SduI	GDGCHC	4 cut(s)	330, 645, 694, 911
SfaNI	GCATC	2 cut(s)	7, 669
Sfr274I	CTCGAG	2 cut(s)	65, 323
SfuI	TTCGAA	1 cut(s)	365
SgrAI	CRCCGGYG	1 cut(s)	832
SinI	GGWCC	1 cut(s)	25
SlaI	CTCGAG	2 cut(s)	65, 323
SmiMI	CAYNNNNRTG	3 cut(s)	15, 125, 453
SmlI	CTYRAG	4 cut(s)	58, 65, 308, 323
SmoI	CTYRAG	4 cut(s)	58, 65, 308, 323
SphI	GCATGC	1 cut(s)	130
Sse9I	AATT	2 cut(s)	475, 962
SsiI	CCGC	3 cut(s)	204, 836, 854
SspMI	CTAG	1 cut(s)	702
StyD4I	CCNGG	2 cut(s)	664, 809
StyI	CCWWGG	3 cut(s)	10, 247, 480
TaaI	ACNGT	1 cut(s)	889
TaqI	TCGA	9 cut(s)	66, 144, 279, 324, 365, 407, 462, 858, 957
TasI	AATT	2 cut(s)	475, 962
TauI	GCSGC	1 cut(s)	856
TfiI	GAWTC	2 cut(s)	500, 661
Tru1I	TTAA	3 cut(s)	75, 792, 876
Tru9I	TTAA	3 cut(s)	75, 792, 876
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	2 cut(s)	148, 556
TseI	GCWGC	3 cut(s)	6, 596, 982
Tsp45I	GTSAC	2 cut(s)	148, 556
TspDTI	ATGAA	5 cut(s)	273, 594, 674, 798, 978
TspRI	CASTG	1 cut(s)	547
VpaK11BI	GGWCC	1 cut(s)	25
XceI	RCATGY	2 cut(s)	126, 130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XhoI	CTCGAG	2 cut(s)	65, 323
XspI	CTAG	1 cut(s)	702
Zsp2I	ATGCAT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.