Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8210356.1

Orthogroup ID

OG0001859

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 641

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8210356.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

atgcaggttgggtataggcatattgattgtgctcaaatttatggaaacgaaaaagagattggttgtgctctgaagaagctatatgatgatggtgtagtgaagcgtgaggacttgtggatcacttcaaaactctggtgtagtaatcatgcaccagaagatgtgccaaaggcactagatggcaccctgcaggacttgcaaagtgactatctcgatctgtacctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

74

Amino Acids

8.5

Weight (kDa)

4.71

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37770
fragaria_vesca	FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020
malus_domestica	MD12G1150200.v1.1
prunus_persica	Prupe.6G094300_v2.0.a1 Prupe.6G261900_v2.0.a1
pyrus_communis	pycom04g12320 pycom12g14390 pycom12g14400
rosa_chinensis	RchiOBHm_Chr3g0465151 RchiOBHm_Chr3g0465231 RchiOBHm_Chr3g0465271 RchiOBHm_Chr3g0465311
rosa_laevigata	RLG00000024648 RLG00000024651 RLG00000024653
rosa_multiflora	Rmu_co8067008.1_g000001 Rmu_co8210356.1_g000001 Rmu_sc0003386.1_g000008 Rmu_sc0003386.1_g000010 Rmu_sc0003492.1_g000019 Rmu_sc0018026.1_g000002 Rmu_sc0021566.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415190 Rroxscaffold_6G00415200
rosa_rugosa	Rorug03G0075800 Rorug03G0075900 Rorug03G0076000 Rorug03G0076100 Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG139500 Rh3BG140100 Rh3BG140500 Rh3DG140800 Rh3DG141600
rosa_wichuraiana	Rw3G011420 Rw3G011430 Rw3G011470 Rw3G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	1 cut(s)	218
AgsI	TTSAA	1 cut(s)	126
AjuI	GAANNNNNNNTTGG	2 cut(s)	42, 74
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw21I	GWGCWC	2 cut(s)	34, 70
AlwI	GGATC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	36
BanI	GGYRCC	1 cut(s)	179
Bbv12I	GWGCWC	2 cut(s)	34, 70
BccI	CCATC	2 cut(s)	83, 170
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	181
BshNI	GGYRCC	1 cut(s)	179
BsiHKAI	GWGCWC	2 cut(s)	34, 70
Bsp1286I	GDGCHC	2 cut(s)	34, 70
Bsp143I	GATC	2 cut(s)	117, 211
BspLI	GGNNCC	1 cut(s)	181
BspMAI	CTGCAG	1 cut(s)	189
BspPI	GGATC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	179
BssMI	GATC	2 cut(s)	117, 211
BstAPI	GCANNNNNTGC	1 cut(s)	193
BstKTI	GATC	2 cut(s)	120, 214
BstMBI	GATC	2 cut(s)	117, 211
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstSFI	CTRYAG	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	1 cut(s)	79
CviKI_1	RGCY	1 cut(s)	79
CviQI	GTAC	1 cut(s)	217
DpnI	GATC	2 cut(s)	119, 213
DpnII	GATC	2 cut(s)	117, 211
Eco57I	CTGAAG	1 cut(s)	92
FaeI	CATG	1 cut(s)	149
FaiI	YATR	6 cut(s)	15, 21, 42, 82, 84, 147
FatI	CATG	1 cut(s)	145
FspBI	CTAG	1 cut(s)	173
Hin1II	CATG	1 cut(s)	149
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	1 cut(s)	209
HpyCH4V	TGCA	4 cut(s)	4, 149, 187, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	149
Kzo9I	GATC	2 cut(s)	117, 211
LpnPI	CCDG	4 cut(s)	118, 165, 173, 197
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	2 cut(s)	119, 213
MboI	GATC	2 cut(s)	117, 211
MboII	GAAGA	2 cut(s)	85, 167
MhlI	GDGCHC	2 cut(s)	34, 70
MluCI	AATT	1 cut(s)	36
MnlI	CCTC	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeII	GATC	2 cut(s)	117, 211
NlaIII	CATG	1 cut(s)	149
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	189
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
Sau3AI	GATC	2 cut(s)	117, 211
SbfI	CCTGCAGG	1 cut(s)	189
SdaI	CCTGCAGG	1 cut(s)	189
SduI	GDGCHC	2 cut(s)	34, 70
SetI	ASST	3 cut(s)	9, 81, 222
SfcI	CTRYAG	1 cut(s)	185
Sse8387I	CCTGCAGG	1 cut(s)	189
Sse9I	AATT	1 cut(s)	36
SspMI	CTAG	1 cut(s)	173
TaqI	TCGA	1 cut(s)	210
TasI	AATT	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	200
XapI	RAATTY	1 cut(s)	36
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.