Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001859

Physical Location & Seq

Genomic Coordinates Reverse (-)

12016735 .. 12019376

Gene Structure 2642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG140800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGTCATCCGCAGGTCTACTGATCATGCACCAGAAGATGTACCGGATGCATTGGATAGGACTTTGAGAGACTTGCAGCTTGATTATGTTGACTTGTACCTGATCCACGGGCCAGTGCGGATGAAGAAGGATTCAGTAGGTTCTGGGCCTGAAAACCTTATACAACCAGATATCCCTGCCACATGGAGAGCAATGGAAACTCTCTATGATTCGTGCAAGGCTCGAGCTATTGGTGTGAGCAATTTCGCTACAAAGAAGCTGTCAGATTTGCTGGATGTGGCACGAGTTCCTCCTGCTGTTAACCAAGTGGAGTGCCATCCTTCATGGCAGCAGGCCAAGCTACGATCCTTCTGCAAATCCAAGGGGGTTCACCTTTCTGGATATTCACCGCTGGGTTCTCCTGGCACAACATTTATCAAAGGCGATGTCCTTAAGAATCCGATTCTTCTCGGTGTGGCAGAGAAGCTAGGCAAGACTCCTGCACAGATTGCTCTTCGATGGGGACTGCAAATGGGTCATAGTGTTCTTCCAAAGAGTACTAATGAAGCAAGGATCAAGGAGAATCTTGATGTCTTTGGCTGGTCTATCCCAGAAGACTTGTTTGCCAAATTTTCTGAAATTGAGCAGGAAAGGCTATTCGATGGGACCATTTTTGTACATGACACTTTTGGACCCTATAGAAGTGTGGATGAACTCTGGGATGGTGAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

237

Amino Acids

26.44

Weight (kDa)

5.88

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	6 - 207	1.8e-32	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37770
fragaria_vesca	FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020
malus_domestica	MD12G1150200.v1.1
prunus_persica	Prupe.6G094300_v2.0.a1 Prupe.6G261900_v2.0.a1
pyrus_communis	pycom04g12320 pycom12g14390 pycom12g14400
rosa_chinensis	RchiOBHm_Chr3g0465151 RchiOBHm_Chr3g0465231 RchiOBHm_Chr3g0465271 RchiOBHm_Chr3g0465311
rosa_laevigata	RLG00000024648 RLG00000024651 RLG00000024653
rosa_multiflora	Rmu_co8067008.1_g000001 Rmu_co8210356.1_g000001 Rmu_sc0003386.1_g000008 Rmu_sc0003386.1_g000010 Rmu_sc0003492.1_g000019 Rmu_sc0018026.1_g000002 Rmu_sc0021566.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415190 Rroxscaffold_6G00415200
rosa_rugosa	Rorug03G0075800 Rorug03G0075900 Rorug03G0076000 Rorug03G0076100 Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG139500 Rh3BG140100 Rh3BG140500 Rh3DG140800 Rh3DG141600
rosa_wichuraiana	Rw3G011420 Rw3G011430 Rw3G011470 Rw3G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	3
AccI	GTMKAC	1 cut(s)	17
AciI	CCGC	3 cut(s)	10, 118, 389
AclWI	GGATC	3 cut(s)	97, 339, 560
AcsI	RAATTY	1 cut(s)	608
AfaI	GTAC	4 cut(s)	42, 98, 538, 657
AflII	CTTAAG	1 cut(s)	431
AjnI	CCWGG	1 cut(s)	400
AluBI	AGCT	5 cut(s)	79, 227, 259, 340, 466
AluI	AGCT	5 cut(s)	79, 227, 259, 340, 466
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	3 cut(s)	97, 339, 560
Ama87I	CYCGRG	1 cut(s)	222
AoxI	GGCC	3 cut(s)	110, 146, 333
ApeKI	GCWGC	2 cut(s)	76, 328
ApoI	RAATTY	1 cut(s)	608
ArsI	GACNNNNNNTTYG	4 cut(s)	245, 277, 411, 443
AspS9I	GGNCC	4 cut(s)	110, 146, 645, 671
AsuHPI	GGTGA	2 cut(s)	362, 378
AvaI	CYCGRG	1 cut(s)	222
AvaII	GGWCC	2 cut(s)	645, 671
BauI	CACGAG	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	600
BbvI	GCAGC	2 cut(s)	88, 340
BccI	CCATC	4 cut(s)	324, 492, 635, 695
BcgI	CGANNNNNNTGC	2 cut(s)	333, 367
BciT130I	CCWGG	1 cut(s)	402
BclI	TGATCA	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	2 cut(s)	467, 712
BfmI	CTRYAG	1 cut(s)	676
BfrI	CTTAAG	1 cut(s)	431
BfuAI	ACCTGC	1 cut(s)	3
BisI	GCNGC	2 cut(s)	77, 329
BlsI	GCNGC	2 cut(s)	78, 330
BmcAI	AGTACT	1 cut(s)	538
Bme1390I	CCNGG	1 cut(s)	402
Bme18I	GGWCC	2 cut(s)	645, 671
BmeT110I	CYCGRG	1 cut(s)	222
BmgT120I	GGNCC	4 cut(s)	110, 146, 645, 671
BmiI	GGNNCC	2 cut(s)	646, 673
BmrFI	CCNGG	1 cut(s)	402
BmsI	GCATC	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	600
BsaJI	CCNNGG	2 cut(s)	106, 360
BsaWI	WCCGGW	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	402
BseDI	CCNNGG	2 cut(s)	106, 360
BseGI	GGATG	7 cut(s)	6, 52, 126, 280, 316, 694, 706
BseMI	GCAATG	1 cut(s)	198
BseNI	ACTGG	1 cut(s)	113
BseXI	GCAGC	2 cut(s)	88, 340
BseYI	CCCAGC	1 cut(s)	391
BsgI	GTGCAG	1 cut(s)	465
BshFI	GGCC	3 cut(s)	112, 148, 335
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	2 cut(s)	516, 658
BsmAI	GTCTC	1 cut(s)	63
BsmFI	GGGAC	2 cut(s)	516, 658
BsnI	GGCC	3 cut(s)	112, 148, 335
BsoBI	CYCGRG	1 cut(s)	222
Bsp1407I	TGTACA	1 cut(s)	655
Bsp143I	GATC	4 cut(s)	22, 102, 344, 552
BspACI	CCGC	3 cut(s)	10, 118, 389
BspANI	GGCC	3 cut(s)	112, 148, 335
BspLI	GGNNCC	2 cut(s)	646, 673
BspMI	ACCTGC	1 cut(s)	3
BspPI	GGATC	3 cut(s)	97, 339, 560
BspQI	GCTCTTC	1 cut(s)	498
BspTI	CTTAAG	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	198
BsrGI	TGTACA	1 cut(s)	655
BsrI	ACTGG	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	106, 360
BssMI	GATC	4 cut(s)	22, 102, 344, 552
BssSI	CACGAG	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	360
Bst2BI	CACGAG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	402
Bst6I	CTCTTC	1 cut(s)	498
BstAFI	CTTAAG	1 cut(s)	431
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstAUI	TGTACA	1 cut(s)	655
BstC8I	GCNNGC	1 cut(s)	333
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	7 cut(s)	6, 52, 126, 280, 316, 694, 706
BstKTI	GATC	4 cut(s)	25, 105, 347, 555
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	4 cut(s)	22, 102, 344, 552
BstMWI	GCNNNNNNNGC	3 cut(s)	337, 488, 631
BstNI	CCWGG	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	400
BstSFI	CTRYAG	1 cut(s)	676
BstV1I	GCAGC	2 cut(s)	88, 340
BstV2I	GAAGAC	1 cut(s)	600
BsuRI	GGCC	3 cut(s)	112, 148, 335
BtgI	CCRYGG	1 cut(s)	106
BtgZI	GCGATG	1 cut(s)	438
BtsCI	GGATG	7 cut(s)	6, 52, 126, 280, 316, 694, 706
BtsIMutI	CAGTG	1 cut(s)	120
BveI	ACCTGC	1 cut(s)	3
Cac8I	GCNNGC	1 cut(s)	333
Cfr13I	GGNCC	4 cut(s)	110, 146, 645, 671
Csp6I	GTAC	4 cut(s)	41, 97, 537, 656
CviAII	CATG	4 cut(s)	26, 183, 324, 659
CviQI	GTAC	4 cut(s)	41, 97, 537, 656
DpnI	GATC	4 cut(s)	24, 104, 346, 554
DpnII	GATC	4 cut(s)	22, 102, 344, 552
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Eco130I	CCWWGG	1 cut(s)	360
Eco32I	GATATC	1 cut(s)	172
Eco47I	GGWCC	2 cut(s)	645, 671
Eco88I	CYCGRG	1 cut(s)	222
EcoRII	CCWGG	1 cut(s)	400
EcoRV	GATATC	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	360
EcoT22I	ATGCAT	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	4 cut(s)	29, 186, 327, 662
FaiI	YATR	9 cut(s)	27, 87, 161, 184, 207, 325, 519, 660, 678
FaqI	GGGAC	2 cut(s)	516, 658
FatI	CATG	4 cut(s)	25, 182, 323, 658
FbaI	TGATCA	1 cut(s)	22
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	2 cut(s)	77, 329
FokI	GGATG	5 cut(s)	59, 133, 287, 303, 701
Fsp4HI	GCNGC	2 cut(s)	77, 329
FspBI	CTAG	2 cut(s)	467, 712
GluI	GCNGC	2 cut(s)	77, 329
GsaI	CCCAGC	1 cut(s)	395
HaeIII	GGCC	3 cut(s)	112, 148, 335
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	4 cut(s)	29, 186, 327, 662
HincII	GTYRAC	2 cut(s)	91, 301
HindII	GTYRAC	2 cut(s)	91, 301
HinfI	GANTC	6 cut(s)	131, 209, 436, 442, 475, 562
HpaI	GTTAAC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	2 cut(s)	362, 378
Hpy166II	GTNNAC	4 cut(s)	18, 91, 301, 370
Hpy188I	TCNGA	3 cut(s)	265, 441, 616
Hpy188III	TCNNGA	2 cut(s)	378, 566
Hpy8I	GTNNAC	4 cut(s)	18, 91, 301, 370
HpyAV	CCTTC	3 cut(s)	121, 330, 358
HpyCH4V	TGCA	7 cut(s)	29, 50, 76, 216, 354, 482, 508
HpyF10VI	GCNNNNNNNGC	3 cut(s)	337, 488, 631
Hsp92II	CATG	4 cut(s)	29, 186, 327, 662
Ksp22I	TGATCA	1 cut(s)	22
KspAI	GTTAAC	1 cut(s)	301
Kzo9I	GATC	4 cut(s)	22, 102, 344, 552
LguI	GCTCTTC	1 cut(s)	498
Lsp1109I	GCAGC	2 cut(s)	88, 340
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	2 cut(s)	467, 712
MalI	GATC	4 cut(s)	24, 104, 346, 554
MboI	GATC	4 cut(s)	22, 102, 344, 552
MboII	GAAGA	6 cut(s)	47, 136, 437, 485, 518, 605
MluCI	AATT	3 cut(s)	241, 608, 618
MlyI	GAGTC	1 cut(s)	469
MnlI	CCTC	1 cut(s)	300
Mph1103I	ATGCAT	1 cut(s)	52
MseI	TTAA	2 cut(s)	300, 432
MspA1I	CMGCKG	1 cut(s)	391
MspCI	CTTAAG	1 cut(s)	431
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	402
MvaI	CCWGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	3 cut(s)	337, 488, 631
NdeII	GATC	4 cut(s)	22, 102, 344, 552
NlaIII	CATG	4 cut(s)	29, 186, 327, 662
NlaIV	GGNNCC	2 cut(s)	646, 673
NsiI	ATGCAT	1 cut(s)	52
PaeR7I	CTCGAG	1 cut(s)	222
PciSI	GCTCTTC	1 cut(s)	498
PfeI	GAWTC	5 cut(s)	131, 209, 436, 442, 562
PkrI	GCNGC	2 cut(s)	78, 330
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
Psp6I	CCWGG	1 cut(s)	400
PspFI	CCCAGC	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	2 cut(s)	646, 673
PspPI	GGNCC	4 cut(s)	110, 146, 645, 671
PspXI	VCTCGAGB	1 cut(s)	222
RsaI	GTAC	4 cut(s)	42, 98, 538, 657
RsaNI	GTAC	4 cut(s)	41, 97, 537, 656
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	2 cut(s)	300, 432
SatI	GCNGC	2 cut(s)	77, 329
Sau3AI	GATC	4 cut(s)	22, 102, 344, 552
Sau96I	GGNCC	4 cut(s)	110, 146, 645, 671
ScaI	AGTACT	1 cut(s)	538
SchI	GAGTC	1 cut(s)	469
ScrFI	CCNGG	1 cut(s)	402
SfaNI	GCATC	1 cut(s)	37
SfcI	CTRYAG	1 cut(s)	676
Sfr274I	CTCGAG	1 cut(s)	222
SinI	GGWCC	2 cut(s)	645, 671
SlaI	CTCGAG	1 cut(s)	222
SmlI	CTYRAG	2 cut(s)	222, 431
SmoI	CTYRAG	2 cut(s)	222, 431
Sse9I	AATT	3 cut(s)	241, 608, 618
SsiI	CCGC	3 cut(s)	10, 118, 389
SspMI	CTAG	2 cut(s)	467, 712
StyD4I	CCNGG	1 cut(s)	400
StyI	CCWWGG	1 cut(s)	360
TaqI	TCGA	3 cut(s)	223, 496, 639
TasI	AATT	3 cut(s)	241, 608, 618
TatI	WGTACW	2 cut(s)	536, 655
TfiI	GAWTC	5 cut(s)	131, 209, 436, 442, 562
Tru1I	TTAA	2 cut(s)	300, 432
Tru9I	TTAA	2 cut(s)	300, 432
TscAI	CASTG	1 cut(s)	120
TseI	GCWGC	2 cut(s)	76, 328
TspDTI	ATGAA	4 cut(s)	137, 312, 558, 705
TspRI	CASTG	1 cut(s)	120
Vha464I	CTTAAG	1 cut(s)	431
VpaK11BI	GGWCC	2 cut(s)	645, 671
XapI	RAATTY	1 cut(s)	608
XhoI	CTCGAG	1 cut(s)	222
XmiI	GTMKAC	1 cut(s)	17
XspI	CTAG	2 cut(s)	467, 712
ZrmI	AGTACT	1 cut(s)	538
Zsp2I	ATGCAT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.