Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001859

Physical Location & Seq

Genomic Coordinates Forward (+)

16950794 .. 16952895

Gene Structure 2102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g14400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAGGAGGAGTGGTTTGGTGCTGAAGAAACTGTTTGAAGATGGTGTGGTGAAGCGCGAGGATTTGTGGATTACCTCCAAACTCTGGAATACTGATCATGCTCCAGAAGATGTACTAGAGGCATTGGACAGGACTCTAAGAGACTTGCAACTGGATTATGTTGACTTGTACCTTATGCACTGGCCATTCCGGATGAAGAAGGGATCAATAGGCCTTAAGCCTGAAAACGTTATTGACCCTGATGTCCCTGCAACTTGGAGAGCAATGGAAACACTCTATGATTCGGGAAAGGCTCGAGCTATTGGTGTGAGCAATTTCTCCACAAAAAAGCTGTCAGATTTGCTGGATGTCGCACGTGTTCCTCCTGCTGTCGACCAAGTGGAGTGCCATCCTTCGTGGCAGCAGGACAAGCTACATTCTTTCTGTAAATCCAAGGGAGTTCACCTTTCTGGATATTCCCCACTGGGCTCTCCTGGAACAACATGGATCAAAAGTGGAGTCCTTAAGAATCCGATTCTTGTGACAGTCGCTGAGAAATTAGGAAAAACTCCTGCACAAGTTGCTCTTCGTTGGGGGCTGCAAAAGGGTCATAGTGTTCTTCCCAAGAGCACTAATGAAGCGATGGATCAAGGAGAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00561 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00561 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

214

Amino Acids

23.82

Weight (kDa)

8.77

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001859)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37770
fragaria_vesca	FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020 FvH4_6g13020
malus_domestica	MD12G1150200.v1.1
prunus_persica	Prupe.6G094300_v2.0.a1 Prupe.6G261900_v2.0.a1
pyrus_communis	pycom04g12320 pycom12g14390 pycom12g14400
rosa_chinensis	RchiOBHm_Chr3g0465151 RchiOBHm_Chr3g0465231 RchiOBHm_Chr3g0465271 RchiOBHm_Chr3g0465311
rosa_laevigata	RLG00000024648 RLG00000024651 RLG00000024653
rosa_multiflora	Rmu_co8067008.1_g000001 Rmu_co8210356.1_g000001 Rmu_sc0003386.1_g000008 Rmu_sc0003386.1_g000010 Rmu_sc0003492.1_g000019 Rmu_sc0018026.1_g000002 Rmu_sc0021566.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415190 Rroxscaffold_6G00415200
rosa_rugosa	Rorug03G0075800 Rorug03G0075900 Rorug03G0076000 Rorug03G0076100 Rorug03G0076200 Rorug03G0076200
rosa_samantha	Rh3BG139500 Rh3BG140100 Rh3BG140500 Rh3DG140800 Rh3DG141600
rosa_wichuraiana	Rw3G011420 Rw3G011430 Rw3G011470 Rw3G011490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	242
AccB7I	CCANNNNNTGG	1 cut(s)	84
AccI	GTMKAC	1 cut(s)	372
AccII	CGCG	1 cut(s)	57
AccIII	TCCGGA	1 cut(s)	189
AclI	AACGTT	1 cut(s)	228
AclWI	GGATC	3 cut(s)	211, 494, 633
AcoI	YGGCCR	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	44
AcvI	CACGTG	1 cut(s)	356
AfaI	GTAC	2 cut(s)	114, 170
AfiI	CCNNNNNNNGG	1 cut(s)	84
AflII	CTTAAG	2 cut(s)	215, 503
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	3 cut(s)	299, 331, 412
AluI	AGCT	3 cut(s)	299, 331, 412
Alw21I	GWGCWC	1 cut(s)	611
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	3 cut(s)	211, 494, 633
AlwNI	CAGNNNCTG	1 cut(s)	530
Ama87I	CYCGRG	1 cut(s)	294
Aor13HI	TCCGGA	1 cut(s)	189
AoxI	GGCC	2 cut(s)	182, 211
ApeKI	GCWGC	2 cut(s)	400, 577
ArsI	GACNNNNNNTTYG	4 cut(s)	317, 349, 483, 515
AspLEI	GCGC	1 cut(s)	57
AsuHPI	GGTGA	2 cut(s)	61, 434
AvaI	CYCGRG	1 cut(s)	294
BalI	TGGCCA	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	470
BbrPI	CACGTG	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	611
BbvI	GCAGC	2 cut(s)	412, 564
BccI	CCATC	3 cut(s)	35, 396, 616
BciT130I	CCWGG	1 cut(s)	474
BclI	TGATCA	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	1 cut(s)	116
BfrI	CTTAAG	2 cut(s)	215, 503
BisI	GCNGC	2 cut(s)	401, 578
BlsI	GCNGC	2 cut(s)	402, 579
Bme1390I	CCNGG	1 cut(s)	474
BmeT110I	CYCGRG	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	474
BmrI	ACTGGG	1 cut(s)	473
BmuI	ACTGGG	1 cut(s)	473
BpmI	CTGGAG	1 cut(s)	87
BsaAI	YACGTR	1 cut(s)	356
BsaJI	CCNNGG	1 cut(s)	432
BsaWI	WCCGGW	1 cut(s)	189
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse1I	ACTGG	3 cut(s)	156, 185, 468
Bse3DI	GCAATG	1 cut(s)	270
BseAI	TCCGGA	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	3 cut(s)	198, 352, 388
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	3 cut(s)	156, 185, 468
BseRI	GAGGAG	2 cut(s)	19, 22
BseXI	GCAGC	2 cut(s)	412, 564
BsgI	GTGCAG	1 cut(s)	537
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	2 cut(s)	184, 213
BsiHKAI	GWGCWC	1 cut(s)	611
BsiHKCI	CYCGRG	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	184, 213
BsoBI	CYCGRG	1 cut(s)	294
Bsp1286I	GDGCHC	2 cut(s)	470, 611
Bsp13I	TCCGGA	1 cut(s)	189
Bsp143I	GATC	4 cut(s)	94, 203, 486, 625
BspANI	GGCC	2 cut(s)	184, 213
BspCNI	CTCAG	1 cut(s)	523
BspEI	TCCGGA	1 cut(s)	189
BspFNI	CGCG	1 cut(s)	57
BspPI	GGATC	3 cut(s)	211, 494, 633
BspQI	GCTCTTC	1 cut(s)	570
BspTI	CTTAAG	2 cut(s)	215, 503
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	3 cut(s)	156, 185, 468
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	4 cut(s)	94, 203, 486, 625
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	33, 526
Bst6I	CTCTTC	1 cut(s)	570
BstAFI	CTTAAG	2 cut(s)	215, 503
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstBAI	YACGTR	1 cut(s)	356
BstDEI	CTNAG	2 cut(s)	137, 531
BstF5I	GGATG	3 cut(s)	198, 352, 388
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	4 cut(s)	97, 206, 489, 628
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	4 cut(s)	94, 203, 486, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 560
BstNI	CCWGG	1 cut(s)	474
BstSCI	CCNGG	1 cut(s)	472
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	412, 564
BsuRI	GGCC	2 cut(s)	184, 213
BtgZI	GCGATG	1 cut(s)	635
BtsCI	GGATG	3 cut(s)	198, 352, 388
BtsIMutI	CAGTG	2 cut(s)	178, 461
CaiI	CAGNNNCTG	1 cut(s)	530
CfoI	GCGC	1 cut(s)	57
Csp6I	GTAC	2 cut(s)	113, 169
CviAII	CATG	2 cut(s)	98, 483
CviJI	RGCY	9 cut(s)	184, 213, 220, 293, 299, 331, 412, 468, 577
CviKI_1	RGCY	9 cut(s)	184, 213, 220, 293, 299, 331, 412, 468, 577
CviQI	GTAC	2 cut(s)	113, 169
DdeI	CTNAG	2 cut(s)	137, 531
DpnI	GATC	4 cut(s)	96, 205, 488, 627
DpnII	GATC	4 cut(s)	94, 203, 486, 625
DrdI	GACNNNNNNGTC	1 cut(s)	242
DseDI	GACNNNNNNGTC	1 cut(s)	242
EaeI	YGGCCR	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Eco130I	CCWWGG	1 cut(s)	432
Eco147I	AGGCCT	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	470
Eco57I	CTGAAG	1 cut(s)	44
Eco72I	CACGTG	1 cut(s)	356
Eco88I	CYCGRG	1 cut(s)	294
EcoRII	CCWGG	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	470
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	2 cut(s)	101, 486
FaiI	YATR	6 cut(s)	99, 159, 176, 279, 484, 591
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	2 cut(s)	97, 482
FbaI	TGATCA	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	2 cut(s)	401, 578
FokI	GGATG	3 cut(s)	205, 359, 375
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	2 cut(s)	401, 578
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	2 cut(s)	401, 578
GsuI	CTGGAG	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	184, 213
HapII	CCGG	1 cut(s)	190
HhaI	GCGC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	101, 486
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HincII	GTYRAC	2 cut(s)	163, 373
HindII	GTYRAC	2 cut(s)	163, 373
HinfI	GANTC	5 cut(s)	133, 281, 498, 508, 514
HpaII	CCGG	1 cut(s)	190
HphI	GGTGA	2 cut(s)	61, 434
Hpy166II	GTNNAC	3 cut(s)	163, 373, 442
Hpy188I	TCNGA	2 cut(s)	337, 513
Hpy188III	TCNNGA	5 cut(s)	85, 104, 190, 285, 450
Hpy8I	GTNNAC	3 cut(s)	163, 373, 442
HpyAV	CCTTC	2 cut(s)	193, 402
HpyCH4III	ACNGT	2 cut(s)	33, 526
HpyCH4IV	ACGT	2 cut(s)	228, 355
HpyCH4V	TGCA	5 cut(s)	148, 178, 251, 554, 580
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 560
HpyF3I	CTNAG	2 cut(s)	137, 531
HpySE526I	ACGT	2 cut(s)	228, 355
Hsp92II	CATG	2 cut(s)	101, 486
HspAI	GCGC	1 cut(s)	55
Kpn2I	TCCGGA	1 cut(s)	189
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	4 cut(s)	94, 203, 486, 625
LguI	GCTCTTC	1 cut(s)	570
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	2 cut(s)	412, 564
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	2 cut(s)	228, 355
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	4 cut(s)	96, 205, 488, 627
MboI	GATC	4 cut(s)	94, 203, 486, 625
MboII	GAAGA	6 cut(s)	37, 50, 119, 208, 557, 590
MhlI	GDGCHC	2 cut(s)	470, 611
MlsI	TGGCCA	1 cut(s)	184
MluCI	AATT	2 cut(s)	313, 536
MluNI	TGGCCA	1 cut(s)	184
MlyI	GAGTC	2 cut(s)	127, 507
MnlI	CCTC	4 cut(s)	52, 85, 112, 372
Mox20I	TGGCCA	1 cut(s)	184
MroI	TCCGGA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	184
MseI	TTAA	2 cut(s)	216, 504
Msp20I	TGGCCA	1 cut(s)	184
MspCI	CTTAAG	2 cut(s)	215, 503
MspI	CCGG	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	409, 560
NdeII	GATC	4 cut(s)	94, 203, 486, 625
NlaIII	CATG	2 cut(s)	101, 486
NmuCI	GTSAC	1 cut(s)	520
PaeR7I	CTCGAG	1 cut(s)	294
PceI	AGGCCT	1 cut(s)	213
PciSI	GCTCTTC	1 cut(s)	570
PfeI	GAWTC	3 cut(s)	281, 508, 514
PflMI	CCANNNNNTGG	1 cut(s)	84
PfoI	TCCNGGA	1 cut(s)	472
PkrI	GCNGC	2 cut(s)	402, 579
PleI	GAGTC	2 cut(s)	127, 506
PmaCI	CACGTG	1 cut(s)	356
PmlI	CACGTG	1 cut(s)	356
PpsI	GAGTC	2 cut(s)	127, 506
Ppu21I	YACGTR	1 cut(s)	356
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	472
PspCI	CACGTG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	472
PspXI	VCTCGAGB	1 cut(s)	294
PstNI	CAGNNNCTG	1 cut(s)	530
RsaI	GTAC	2 cut(s)	114, 170
RsaNI	GTAC	2 cut(s)	113, 169
SalI	GTCGAC	1 cut(s)	371
SapI	GCTCTTC	1 cut(s)	570
SaqAI	TTAA	2 cut(s)	216, 504
SatI	GCNGC	2 cut(s)	401, 578
Sau3AI	GATC	4 cut(s)	94, 203, 486, 625
SchI	GAGTC	2 cut(s)	127, 507
ScrFI	CCNGG	1 cut(s)	474
SduI	GDGCHC	2 cut(s)	470, 611
SetI	ASST	9 cut(s)	77, 174, 231, 301, 333, 358, 414, 447, 640
Sfr274I	CTCGAG	1 cut(s)	294
SlaI	CTCGAG	1 cut(s)	294
SmlI	CTYRAG	3 cut(s)	215, 294, 503
SmoI	CTYRAG	3 cut(s)	215, 294, 503
Sse9I	AATT	2 cut(s)	313, 536
SseBI	AGGCCT	1 cut(s)	213
SspMI	CTAG	1 cut(s)	116
StuI	AGGCCT	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	472
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	2 cut(s)	33, 526
TaiI	ACGT	2 cut(s)	231, 358
TaqI	TCGA	2 cut(s)	295, 372
TasI	AATT	2 cut(s)	313, 536
TatI	WGTACW	1 cut(s)	112
TfiI	GAWTC	3 cut(s)	281, 508, 514
Tru1I	TTAA	2 cut(s)	216, 504
Tru9I	TTAA	2 cut(s)	216, 504
TscAI	CASTG	2 cut(s)	185, 468
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	2 cut(s)	400, 577
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	2 cut(s)	209, 630
TspRI	CASTG	2 cut(s)	185, 468
Van91I	CCANNNNNTGG	1 cut(s)	84
Vha464I	CTTAAG	2 cut(s)	215, 503
XhoI	CTCGAG	1 cut(s)	294
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.